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Publications & Reports

Review our work products 

We provide easy access to thousands of SFEI’s reports, journal articles, books, conference papers/proceedings, factsheets, hearing summaries, maps, and more. 

These printable and downloadable materials connect our science to action, cover a broad range of topics, and have many applications. This library is searchable and filterable. If you have difficulty finding the information you are looking for, please contact us at [email protected].

Programs & Topics

Select the program or topic of your interest among the nested filters below. 

EcoAtlas Essentials Webinar Showcases Practical Tools for Ecological Planning

Author(s): Cristina Grosso | Todd Hallenbeck | Lisa Beers | Sarah Pearce | Pete Kauhanen | Erica Johnson | Heidi Williams

2025

On October 1, 2025, the San Francisco Estuary Geospatial Workgroup (SFEGWG) hosted EcoAtlas Essentials: Practical Tools for Effective Ecological Planning, a webinar designed to guide participants in exploring how …

Lake Silveira CRAM Assessments: Mitigation Monitoring Report Post-Construction - Year 5 (2025)

Author(s): Sarah Pearce | Sarah Lowe | David Peterson

2025

The Santa Clara Valley Water District’s (Valley Water) Upper Llagas Creek Flood Protection Project (Project) aims to increase flood protection within the City of Morgan Hill and surrounding unincorporated areas. Project impacts are being mitigated by permittee-responsible…

Guadalupe River Watershed Reassessment 2022: 10-Year Reassessment of the Ecological Condition of Streams Based on the California Rapid Assessment Method

Author(s): Sarah Pearce | Sarah Lowe | David Peterson | Denise Walker | Pete Kauhanen | Zooey Diggory | Douglas Titus

2024

The baseline survey of ecological condition of streams within the Guadalupe River watershed was completed in 2012, and this reassessment survey was completed ten years later in 2022. The survey focuses upon stream conditions in the watershed as a whole, and in two primary…

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Lahontan Surface Water Ambient Monitoring Program’s 20-Year Water Quality Review and Program Recommendations

Author(s): Sarah Lowe | K. Huck | A. Misico | L. Scirbe | D. Sussman

2023

This 20-year water quality monitoring status and trends report for the Lahontan Water Board’s Surface Water Ambient Monitoring Program (Regional SWAMP) provides an overview of the environmental settings across the Region to give the reader a sense of the diverse ecological…

WRAMP Training and Outreach Plan

Author(s): Cristina Grosso | Sarah Lowe | Sarah Pearce | Kevin O'Connor | Lindsay Teunis | Eric Stein | Jennifer Siu | Melissa Scianni

2023

The goal of this Training and Outreach Plan is to increase the overall awareness and use  of the WRAMP datasets and tools in support of wetland resource planning,  management, and project performance tracking in California. Specifically, a near-term …

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Building Capacity of the California Wetland Program Plan to Protect and Restore Vernal Pools

Author(s): Sarah Lowe | Sarah Pearce

2022

This report describes the updates to the vernal pool habitat map, the development of the ambient baseline ecological condition survey of vernal pool systems within the Central Valley, and the development and results of the habitat development curve. A fictional project…

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Coyote Creek Watershed Reassessment 2020: 10-Year Reassessment of the Ecological Condition of Streams Applying the California Rapid Assessment Method, Santa Clara County, California

Author(s): Sarah Lowe | Sarah Pearce | Pete Kauhanen | Josh Collins | Douglas Titus

2021

This report describes the amount and distribution of aquatic resources in the Coyote Creek watershed, Santa Clara County, California, and presents the first reassessment of stream ecosystem conditions using a watershed approach and the California Rapid Assessment Method (CRAM…

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Remote Sensing Recommendations for Tidal Wetland Indicators

Author(s): Pete Kauhanen | Sarah Lowe

2021

This document presents potential products and methods for monitoring a suite of tidal wetland habitat indicators designated for the Montezuma Wetlands Project using remote sensing technology. This document can also serve as a starting place for the Technical Advisory…

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Coyote Creek Watershed Reassessment 2020 Ambient Stream Condition Survey Design and Monitoring Plan: A Review of the Original 2010 Survey Design and Development of the 2020 Reassessment Strategy

Author(s): Sarah Lowe | Sarah Pearce | Douglas Titus

2020

This technical report describes the ten-year ambient stream condition reassessment survey design and monitoring plan (or strategy) for the Coyote Creek watershed. Because the reassessment employed (and modified) the 2010 sample draw, essential background information about the…

Santa Clara County Five Watersheds Assessment: A Synthesis of Ecological Data Collection and Analysis Conducted by Valley Water

Author(s): Sarah Lowe | Sarah Pearce | Micha Salomon | Josh Collins | Douglas Titus

2020

This report synthesizes the baseline assessments for Santa Clara County’s five watersheds to present similarities, differences, and compare ecological condition in streams across watersheds and their subregions, San Francisco Bay-Delta ecoregion, and statewide based on CRAM.…

Using The California Rapid Assessment Method (CRAM) For Project Assessment as an Element of Regulatory, Grant, and Other Management Programs Technical Bulletin – Version 2.0

Author(s):

2019

The California Rapid Assessment Method (CRAM) is a tool for assessing the condition of wetlands and streams at scales ranging from individual projects to watersheds, regions, and statewide. CRAM, alone or with other assessment methods, can be used to assess current conditions…

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West Valley Watershed Assessment 2018: Baseline Ecological Condition Assessment of Southwest San Francisco Bay Creeks in Santa Clara County; Calabazas, San Tomas Aquino, Saratoga, Sunnyvale East and West

Author(s): Sarah Lowe | Micha Salomon | Sarah Pearce | Josh Collins | Doug Titus

2019

This report describes baseline information about the amount and distribution of aquatic resources, and evaluates the overall ecological conditions of streams using the California Rapid Assessment Method (CRAM), for the West Valley watershed in Santa Clara County; consisting…

West Valley Watershed Assessment 2018: Study Area Extent, Stream Survey Design, Sample Frame, and Sample Draw

Author(s): Sarah Lowe | Micha Salomon | Sarah Pearce | Josh Collins | Douglas Titus

2018

This memorandum describes the steps taken by the D5 Project and SFEI project team to identify the
extent of the West Valley watershed study area, define the CRAM stream survey design parameters,
and complete the sample draw for the 2018 CRAM field assessment.

Applied Aquatic Science: A Business Plan for EcoAtlas

Author(s): Tony Hale | Cristina Grosso

2017

The following plan is intended to ensure the continued vitality of the toolset. The plan’s success will depend upon the continued collaboration of the public agencies that have supported the toolset thus far, but it must also integrate principles of resilience as it accounts…

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Delta Landscapes: A Delta Renewed User Guide

Author(s): April Robinson | Julie Beagle | Samuel Safran | Katie McKnight | Letitia Grenier | Ruth Askevold

2017

A Delta Renewed User Guide aims to increase the accessibility of the technical findings in A Delta Renewed for easier application to restoration and conservation efforts across the Delta. The recommendations in A Delta Renewed focus on landscape-scale ecological guidance. We…

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MS4 2009 Permit Monitoring Results (2010-2015) Summary of Sonoma County Water Agency’s Data for two Sites in Santa Rosa Creek

Author(s): Sarah Lowe

2017

This memo summarizes the Sonoma County Water Agency's  2009 receiving water monthly monitoring results for the North Coast Regional Water Quality Control Board's NPDES Permit No. R1-2009-0050.  The data were compiled, formatted and uploaded to SFEI’s…

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A Watershed Approach to Restoration and Mitigation Planning, Monitoring, and Assessment Based on the Wetland and Riparian Area Monitoring Plan (WRAMP): Addendum to the Upper Pajaro River Watershed Assessment 2015

Author(s): Sarah Lowe | Sarah Pearce | Josh Collins

2017

This report demonstrates a possible watershed-based approach to evaluating mitigation sites using the California Rapid Assessment Method (CRAM). The Santa Clara Valley Water District (Valley Water) is leading the Llagas Creek Flood Control Project in the upper Pajaro River…

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Framework to coordinate water quality improvement and wildlife habitat conservation to protect California streams, wetlands, and riparian areas

Author(s): Josh Collins | Sarah Lowe

2016

The emergence of comparable landscape approaches to wildlife conservation and water quality improvement through federal and California state regulatory and management programs provides an opportunity for their coordination to better protect California’s aquatic resources,…

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An Introduction to EcoAtlas: Applied Aquatic Science

Author(s): Tony Hale | Cristina Grosso

2016

This memo was developed by SFEI to introduce the EcoAtlas tools, their intended (target) user community, and the short- and long-term intended applications. 

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Lower Peninsula Watershed Condition Assessment 2016. Technical memorandum prepared for the Santa Clara Valley Water District - Priority D5 Project.

Author(s): Sarah Lowe | M. Salomon | Sarah Pearce

2016

In 2016 The Santa Clara Valley Water District and its consultants conducted a watershed wide survey to characterize the distribution and abundance of the aquatic resources within the Lower Peninsula watershed wtihin Santa Clara County, CA based on available GIS data…

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Upper Pajaro River Watershed Condition Assessment 2015. Technical memorandum prepared for the Santa Clara Valley Water District - Priority D5 Project.

Author(s): Sarah Lowe | M. Salomon | Sarah Pearce | Josh Collins | D. Titus

2016

In 2015 The Santa Clara Valley Water District and it's consultants conducted a watershed wide survey to characterize the distribution and abundance of the aquatic resources within the upper Pajaro River watershed wtihin Santa Clara County, CA based on available GIS…