Sam Safran

Primary Production, the amount of tissue generated by photosynthetic organisms (e.g., plants and algae) over time, forms the basis of food webs. The Sacramento-San Joaquin Delta has unusually low primary productivity relative to other estuaries (Cloern et al. 2014, Jassby et al. 2002). Food availability has been identified as one contributor to the multi-stressor problem of pelagic organism decline in the Delta (Baxter et al. 2010).  But, the constraints on primary production and the relative importance of different production sources to the food web are major uncertainties in this system. Landscape configuration and hydrodynamics are major drivers of primary production dynamics, and understanding how the extensive historical changes in the Delta’s landscape have altered the system’s potential for supporting wildlife and human populations can inform restoration planning and management across the region. Investigating basics about primary production in the Delta can guide us towards better restoration and management decisions.

This project is a tool for planning scenarios of landscape-scale restoration. The tool is designed to inform ongoing and future restoration planning efforts. In particular, this tool will help inform implementation of restoration objectives as described in the Delta Plan, as well as the ongoing Ecosystem Amendment to Chapter 4.

Restoring wetlands in the Sacramento-San Joaquin Delta (Delta) can mitigate subsidence, sequester carbon, reduce GHG emissions, and provide habitat for wetland dependent species. These benefits–their magnitude, scope, and resilience to future sea level rise–depend on the type and siting of new wetlands; rates of carbon accumulation, GHG emissions, and vertical accretion; and opportunities for wetlands to migrate upslope.

In partnership with the Delta Stewardship Council, the San Francisco Estuary Institute has developed version 2.0 of the Landscape Scenario Planning Tool, a GIS-based analysis toolkit to evaluate user-designed land use and restoration scenarios for the Sacramento-San Joaquin Delta and Suisun Marsh. This free mapping toolbox brings together ten years of science-based research and peer-reviewed methods for California’s Delta-Suisun region. 

The Tijuana River Valley Historical Ecology Investigation synthesized hundreds of historical maps, photographs, and texts to reconstruct the the ecological, hydrological, and geomorphic conditions of the valley prior to major European-American landscape modification.

This project is a tool for planning scenarios of landscape-scale restoration of the Delta. The tool is designed to inform ongoing and future restoration planning efforts in the Delta. In particular, this tool will help inform implementation of restoration objectives as described in the Delta Plan, as well as the ongoing Ecosystem Amendment to Chapter 4.

The Delta Aquatic Resource Inventory (DARI) is a map of surface waters, wetlands and other aquatic resources in the Sacramento-San Joaquin Delta. A similar mapping approach used to create the Bay Area Aquatic Resource Inventory (BAARI) was applied to complete a consistent map across the larger San Francisco Estuary. Both DARI and BAARI are integrated into the California Aquatic Resource Inventory (CARI), which serves as the basemap in EcoAtlas.

DARI is the Delta Aquatic Resources Inventory of surface waters, wetlands and other aquatic resources in the Sacramento-San Joaquin Delta (Delta). The goal of the DARI project is to develop a geospatial inventory of aquatic resources that will be used as a common base map for the Delta. A similar mapping approach used to create the California Aquatic Resource Inventory (CARI) will be applied to provide a map of the aquatic resources and their associated attributes.

Hidden Nature SF brings a new perspective to our view of San Francisco, studying the city’s historical ecology in order to engage the public in re-imagining San Francisco’s ecological past, present, and future.

SFEI is using bird observations from eBird to study habitat suitability and build occupancy models for California Quail to inform the Presidio Trust and other park managers how management interventions could help improve quail survival.

The Journal of Applied Ecology has just published research by Kelly Iknayan of the San Francisco Estuary Institute (SFEI) and co-authors from the Presidio Trust and SFEI that will help to guide a joint study on the feasibility of bringing back the native California quail to San Francisco. 

Hidden Nature SF seeks to uncover the natural history of San Francisco’s past landscape. At the heart of the project is the field of historical ecology, which uses interdisciplinary science and visualization techniques to synthesize historical archival data into a completely new perspective on the familiar city. Drawing on hundreds of old maps, photographs, and textual documents, we are reconstructing and mapping the ecosystems and waterways that existed in San Francisco prior to Spanish colonization.

SFEI and our partners from the Exploratorium, the San Francisco Department of the Environment, and the Presidio Trust were joined live by over 400 participants for a conversation around the nature, both past and present, that is hidden in plain sight in San Francisco. On Wednesday, February 24th, SFEI unveiled our mapping of San Francisco’s historical ecology and shared stories that uncover the mysteries of San Francisco’s ecological past.

SFEI is coordinating the mapping for two inventories of surface waters, wetlands and other aquatic resources in the Sacramento-San Joaquin Delta and along California’s coast. Both efforts will apply the California Aquatic Resource Inventory (CARI) standardized mapping methods and the final map will be integrated into EcoAtlas and made publicly available.

The Resilience Atlas is an interactive mapping platform that visualizes the past, present and future conditions of the Bay’s edge and surrounding watersheds by combining layers of information, such as shoreline infrastructure, shoreline change over time, and sea level rise. 

The newly released Adaptation Atlas (adaptationatlas.sfei.org) has been making waves on several significant media outlets, including the San Francisco Chronicle, the San Jose Mercury News, Politico, ABC 7 News, East Bay Times, and the Marin Independent Journal.

We welcome you to learn more about the adaptation strategies that might be best suited to your own "natural jurisdiction."

The San Francisco Estuary Institute (SFEI) released A Delta Renewed – A Guide to Science-Based Ecological Restoration in the Sacramento-San Joaquin Delta.

In partnership with SPUR, The Operational Landscape Units project, funded by the SF Bay Regional Water Quality Control Board, will create a new way of looking at the Bay.

The challenges of accelerating sea level rise and aging shoreline infrastructure are creating a once-in-a-century opportunity to redesign the Bay shore. Originally constructed with little regard for the Bay, the future shoreline can more successfully integrate the natural and built environments to make a healthier shore for both the Bay and local communities. New shoreline design approaches must incorporate the complex ecological and physical processes of our urbanized estuary while anticipating the future challenges of climate change and extreme weather.

An accurate basemap is fundamental to watershed planning and assessments. The California Aquatic Resources Inventory, or CARI, offers such a basemap for aquatic resource identification and classification. But to keep it current and enhance its details, SFEI-ASC must leverage local knowledge. The new CARI Editor promotes regional stewardship and allows users to submit updates, deletions or new features for streams and wetlands.