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Publications & Reports

Review our work products 

We provide easy access to thousands of SFEI’s reports, journal articles, books, conference papers/proceedings, factsheets, hearing summaries, maps, and more. 

These printable and downloadable materials connect our science to action, cover a broad range of topics, and have many applications. This library is searchable and filterable. If you have difficulty finding the information you are looking for, please contact us at [email protected].

Programs & Topics

Select the program or topic of your interest among the nested filters below. 

2026 Bay RMP Multi-Year Plan

Author(s): Amy Kleckner | Jay Davis

2026

The purpose of this document is to guide efforts and summarize plans developed within the RMP. The intended audience includes representatives of the many organizations who directly participate in the Program. This document will also be useful for individuals who are not…

2026 Bay RMP Detailed Workplan and Budget

Author(s): Amy Kleckner | Jay Davis

2026

In 2026, the Regional Monitoring Program for Water Quality in San Francisco Bay (RMP) is entering its 34th year of collecting data and communicating information to support water quality management decisions. This Detailed Workplan and Budget describes the activities that will…

Integrated Watershed Modeling and Monitoring Framework to Support the Regional Monitoring Program

Author(s): Lester McKee | Kelly Moran | Jay Davis

2025

The Regional Monitoring Program (RMP) is transitioning from a watershed program predominantly using monitoring data and data-driven load estimation methods to support management decisions on polychlorinated biphenyls (PCBs) and mercury (Hg) to an integrated modeling and…

2025 Bay RMP Detailed Workplan and Budget

Author(s): Amy Kleckner | Jay Davis

2025

In 2025, the Regional Monitoring Program for Water Quality in San Francisco Bay (RMP) is
entering its 33rd year of collecting data and communicating information to support water
quality management decisions. This Detailed Workplan and Budget describes the activities…

2025 Bay RMP Multi-Year Plan

Author(s): Amy Kleckner | Jay Davis

2025

The purpose of this document is to guide efforts and summarize plans developed within the RMP. The intended audience includes representatives of the many organizations who directly participate in the Program. This document will also be useful for individuals who are not…

Screening Bay Area Stormwater for Emerging Contaminants: Summary for Managers

Author(s): Rebecca Sutton | Pedro Avellaneda | Miguel Méndez | Jennifer Dougherty | Alicia Gilbreath

2024

As part of a maturing science strategy, the Regional Monitoring Program for Water Quality in San Francisco Bay (RMP) focuses on monitoring and modeling of emerging contaminants in major pathways in an effort to track Bay contaminants back to their sources and better inform…

RMP Sources, Pathways, and Loadings Strategy: 2024 Update

Author(s): Alicia Gilbreath | Lester McKee | Matthew Heberger | Kelly Moran

2024

The Sources, Pathways, and Loadings (SPL) Workgroup (WG) is one of the five active workgroups within the Regional Monitoring Program for Water Quality in San Francisco Bay (Bay; RMP). The Workgroup produces recommendations for collection, interpretation, and synthesis of data…

Residential Wastewater as a Major Source of Per- and Polyfluoroalkyl Substances to Municipal Wastewater

Author(s): Diana Lin | Miguel Méndez | Kayli Paterson | Adam Wong | Donald Yee | Rebecca Sutton | Erika Houtz | Mary Cousins | Lorien Fono

2024

Identification of major sources of per- and polyfluoroalkyl substances (PFAS) in wastewater requires comprehensive evaluation, as wastewater is a pathway for a wide range of PFAS products in use, and the PFAS class includes thousands of compounds. We applied both EPA Method…

Storms mobilize organophosphate esters, bisphenols, PFASs, and vehicle-derived contaminants to San Francisco Bay watersheds

Author(s): Katherine Peter | Alicia Gilbreath | Melissa Gonzalez | Zhenyu Tian | Adam Wong | Donald Yee | Ezra Miller | Pedro Avellaneda | Da Chen | Andrew Patterson | Nicole Fitzgerald | Christopher Higgins | Edward Kolodziej | Rebecca Sutton

2024

In urban to peri-urban watersheds such as those surrounding San Francisco Bay, stormwater runoff is a major pathway by which contaminants enter aquatic ecosystems. We evaluated the occurrence of 154 organic contaminants via liquid chromatography coupled to tandem mass…

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Multi Year Plan 2024

Author(s): Amy Kleckner | Jay Davis

2024

The purpose of this document is to guide efforts and summarize plans developed within the RMP. The intended audience includes representatives of the many organizations who directly participate in the Program. This document will also be useful for individuals who are not…

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2024 Detailed Workplan and Budget

Author(s): Amy Kleckner | Jay Davis

2023

In 2024, the Regional Monitoring Program for Water Quality in San Francisco Bay (RMP) is entering its 32nd year of collecting data and communicating information to support water quality management decisions. This Detailed Workplan and Budget describes the activities that will…

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Multi-Year Plan 2023

Author(s): Melissa Foley | Jay Davis | Donald Yee

2023

The purpose of this document is to guide efforts and summarize plans developed within the RMP. The intended audience includes representatives of the many organizations who directly participate in the Program. This document will also be useful for individuals who are not…

San Francisco Bay Sediment Modeling and Monitoring Workplan

Author(s): Lester McKee | David Peterson | Alex Braud | Melissa Foley | Scott Dusterhoff | Jeremy Lowe | Allie King | Jay Davis

2023

This document was prepared with guidance gained through two RMP Sediment Workgroup workshops held in late 2022 and early 2023. Given the variety of participants involved, this Workplan encompasses interests beyond San Francisco Bay RMP funders. We thank the attendees for…

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2021 RMP Water Cruise Report

Author(s): Applied Marine Sciences (AMS)

2022

This report details activities associated with the biannual Regional Monitoring Program for Water Quality in the San Francisco Estuary (RMP) water cruise. The RMP water sampling program was redesigned in 2002 to adopt a randomized sampling design at thirty-one sites in place…

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2022 RMP Detailed Workplan and Budget

Author(s): Melissa Foley | Jay Davis | Donald Yee

2022

In 2022 the Regional Monitoring Program for Water Quality in San Francisco Bay (RMP) is entering its 31st year of collecting data and communicating information to support water quality management decisions. This Detailed Workplan and Budget describes the activities that will…

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Charter: Regional Monitoring Program for Water Quality in San Francisco Bay

Author(s): Melissa Foley | Jay Davis

2022

This Charter describes the purpose and function of the Regional Monitoring Program for Water


Quality in San Francisco Bay (RMP). Established in 1993, the RMP is a collaborative effort


between the San Francisco Estuary Institute, the California Regional Water…

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San Francisco Bay Watershed Dynamic Model (WDM) Progress Report, Phase 2

Author(s): Tan Zi | Alex Braud | Lester McKee | Melissa Foley

2022

The San Francisco Bay total maximum daily loads (TMDLs) call for a 50% reduction in mercury (Hg) loads by 2028 and a 90% reduction in PCBs loads by 2030. In support of these TMDLs, the Municipal Regional Permit for Stormwater (MRP) (SFBRWQCB, 2009, SFBRWQCB, 2015, SFBRWQCB,…

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Strategy for In-Bay Fate Modeling to Support Contaminant and Sediment Management in San Francisco Bay

Author(s): Craig Jones | Jay Davis | Donald Yee

2022

This report presents a strategy and multi-year workplan for modeling polychlorinated biphenyls (PCBs), contaminants of emerging concern (CECs), and sediment in San Francisco Bay (the Bay). Robust in-Bay fate modeling is needed to address priority management questions that…

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Summary and Evaluation of Bioaccumulation Tests for Total Polychlorinated Biphenyls (PCBs) Conducted by San Francisco Bay Dredging Projects

Author(s): Miguel Mendez | Cristina Grosso | Diana Lin

2022

The Dredged Material Management Office (DMMO) is responsible for annually approving dredging and disposal of millions of cubic yards of sediment to maintain safe navigation in San Francisco Bay. Dredged sediment is characterized for physical, chemical, and biological…

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Suspect Screening and Chemical Profile Analysis of Storm-Water Runoff Following 2017 Wildfires in Northern California

Author(s): Miaomiao Wang | Juliet Kinyua | Ting Jiang | Meg Sedlak | Lester McKee | Richard Fadness | Rebecca Sutton | June-Soo Park

2022

The combustion of structures and household materials as well as firefighting during wildfires lead to releases of potentially hazardous chemicals directly into the landscape. Subsequent storm-water runoff events can transport wildfire-related contaminants to downstream…

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2019 RMP Data Quality Assurance Report

Author(s): Donald Yee

2021

This memo provides a high-level summary of the quality assurance assessment for data reported by the RMP.  In 2019, fish tissue samples were collected from nine Bay/Delta areas and three additional wetland/slough areas for the Regional Monitoring Program for Water…

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2021 RMP Detailed Workplan and Budget

Author(s): Melissa Foley | Jay Davis | Donald Yee

2021

In 2021 the Regional Monitoring Program for Water Quality in San Francisco Bay (RMP) is entering its 29th year of collecting data and communicating information to support water quality management decisions. This Detailed Workplan and Budget describes the activities that will…

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Pollutants of Concern Reconnaissance Monitoring Progress Report, Water Years 2015 - 2019

Author(s): Alicia Gilbreath | Jennifer Hunt | Lester McKee

2020

Reconnaissance monitoring for water years 2015, 2016, 2017, 2018 and 2019 was completed with funding provided by the Regional Monitoring Program for Water Quality in San Francisco Bay (RMP). This report is designed to be updated each year until completion of the study. At…

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Summary of Water Year 2017 precipitation, discharge, and sediment conditions at selected locations in Arroyo de la Laguna watershed, with a focus on Arroyo Mocho

Author(s): Sarah Pearce | Lester McKee

2020

This report summarizes the precipitation, discharge, and sediment conditions observed from October 1, 2016 to September 30th, 2017 (Water Year (WY) 2017) in the Arroyo de la Laguna watershed, with a focus on the Arroyo Mocho watershed. This information was collected by the…

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2019 RMP Annual Workplan and Budget

Author(s): Melissa Foley | Jay Davis | Donald Yee

2019

In 2019 the Regional Monitoring Program for Water Quality in San Francisco Bay (RMP) is entering its 27th year of collecting data and communicating information to support water quality management decisions. This Detailed Workplan and Budget describes the activities that will…

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Conceptual Model to Support PCB Management and Monitoring in the San Leandro Bay Priority Margin Unit - Final Report

Author(s): Donald Yee | Alicia Gilbreath | Lester McKee | Jay Davis

2019

The goal of RMP PCB special studies over the next few years is to inform the review and possible revision of the PCB TMDL and the reissuance of the Municipal Regional Permit for Stormwater, both of which are tentatively scheduled to occur in 2020. Conceptual model development…

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Optimal Selection and Placement of Green Infrastructure in Urban Watersheds for PCB Control

Author(s): Jing Wu | Pete Kauhanen | Jennifer Hunt | David Senn | Tony Hale | Lester McKee

2019

San Francisco Bay and its watersheds are polluted by legacy polychlorinated biphenyls (PCBs), resulting in the establishment of a total maximum daily load (TDML) that requires a 90% PCB load reduction from municipal stormwater. Green infrastructure (GI) is a multibenefit…

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The Regional Monitoring Program for Water Quality in San Francisco Bay, California, USA: Science in support of managing water quality

Author(s): Phil Trowbridge | Jay Davis | Tom Mumley | K. Taberski | N. Feger | L. Valiela | J. Ervin | N. Arsem | A. Olivieri | P. Carroll | J. Coleman | P. Salop | Rebecca Sutton | Donald Yee | Lester McKee | M. Sedlak | Cristina Grosso | J. Kelly

2016

The Regional Monitoring Program for Water Quality in San Francisco Bay (RMP) is a novel partnership between regulatory agencies and the regulated community to provide the scientific foundation to manage water quality in the largest Pacific estuary in the Americas. The RMP…

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Regional monitoring programs in the United States: Synthesis of four case studies from Pacific, Atlantic, and Gulf Coasts

Author(s): K. Schiff | Phil Trowbridge | E.T. Sherwood | P. Tango | R.A. Batiuk

2016

Water quality monitoring is a cornerstone of environmental protection and ambient monitoring provides managers with the critical data they need to take informed action. Unlike site-specific monitoring that is at the heart of regulatory permit compliance, regional monitoring…

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Concentrations and loads of PCBs, dioxins, PAHs, PBDEs, OC pesticides and pyrethroids during storm and low flow conditions in a small urban semi-arid watershed

Author(s): Alicia Gilbreath | Lester McKee

2015

Urban runoff has been identified in water quality policy documents for San Francisco Bay as a large and potentially controllable source of pollutants. In response, concentrations of suspended sediments and a range of trace organic pollutants were intensively measured in dry…