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Regional Curves of Hydraulic Geometry for Wadeable Streams In Marin and Sonoma Counties, San Francisco Bay Area. Watershed Sciences Berkeley and Marin County Flood Control District.
2013. 
Riparian Zone Estimation Tool: Hydrologic Connectivity Module Field Plan. San Francisco Estuary Institute: Richmond, CA.
. 2013. 
Seasonal and annual trends in forage fish mercury concentrations, San Francisco Bay. Science of the Total Environment 444, 591-601.
2013. Seasonal and annual trends in forage fish mercury concentrations, San Francisco Bay. Science of the Total Environment 444, 591-601.
2013. 
Seasonal variations in suspended-sediment dynamics in the tidal reach of an estuarine tributary. Marine Geology 345, 314-326.
2013. A sediment budget for the southern reach in San Francisco Bay, CA: Implications for habitat restoration. Marine Geology 345, 281-293.
2013. Sediment transport in the San Francisco Bay Coastal System: An overview. Marine Geology Special Issue: A multi-discipline approach for understanding sediment transport and geomorphic evolution in an estuarine-coastal system.
2013. Statistical Design, Analysis, and Graphics for the Guadalupe River Watershed Assessment 2012. SFEI Contribution No. 687. San Francisco Estuary Institute: Richmond, CA.
2013. 
2013.
2010 Annual Monitoring Results. San Francisco Estuary Institute: Richmond, CA.
2012. 

2011 Pulse of the Estuary: Pollutant Effects on Aquatic Life. SFEI Contribution No. 660. San Francisco Estuary Institute : Richmond, CA. p 104.
. 2012. 
Application of Gene Expression Analysis for Sediment Toxicity Stressor Identification. SFEI Contribution No. 659.
2012. 
Brominated and Chlorinated Flame Retardants in San Francisco Bay Sediments and Wildlife. Environment International 47, 56-65.
2012. 
California Wetland and Riparian Area Protection Policy. Technical Advisory Team. Technical Memorandum No. 3: Landscape Framework for Wetlands and Other Aquatic Areas. SFEI Contribution No. 999.
. 2012. 
California Wetland and Riparian Area Protection Policy. Technical Advisory Team. Technical Memorandum No. 4: Wetland Identification and Delineation. SFEI Contribution No. 1000.
. 2012. 
California Wetland and Riparian Area Protection Policy. Technical Advisory Team. Technical Memorandum No. 2: Wetland Definition. SFEI Contribution No. 998.
. 2012. 
Concentrations and Loads of Trace Contaminants in a Small Urban Tributary, San Francisco Bay, California. SFEI Contribution No. 650. SFEI: Richmond, CA. p 40.
2012. 
Conceptual Foundations for Modeling Bioaccumulation in San Francisco Bay. SFEI: Richmond, CA. p 88.
2012. 
Conceptual Model of Contaminant Fate on the Margins of San Francisco Bay. SFEI Contribution No. 663. SFEI: Richmond, CA. p 67.
2012. 

Contaminants in Fish From the California Coast, 2009-2010 Summary Report on a Two-Year Screening Survey. California State Water Resources Control Board: Sacramento, CA.
2012. 






Contaminants of Emerging Concern in the San Francisco Estuary: Alkylphenol Ethoxylates. SFEI Contribution No. 657. SFEI: Richmond, CA. p 17.
2012. 

Contaminants of Emerging Concern in the San Francisco Estuary: Carbamazepine. SFEI Contribution No. 658. SFEI: Richmond, CA. p 14.
2012. 
Development of Regional Suspended Sediment and Pollutant Load Estimates for San Francisco Bay Area Tributaries using the Regional Watershed Spreadsheet Model (RWSM): Year 2 Progress Report. SFEI Contribution No. 667. SFEI: Richmond, CA. p 17.
2012. 
Estimated Atmospheric Deposition Fluxes of Dioxins in the San Francisco Estuary. SFEI Contribution No. 661. SFEI: Richmond, CA.
2012. 
Estimation of Loads of Mercury, Selenium, PCBs, PAHs, PBDEs, Dioxins, and Organochlorine Pesticides from the Sacramento-San Joaquin River Delta to San Francisco Bay. San Francisco Estuary Institute: Richmond, CA.
2012. 
Estuary News RMP Insert 2012. Estuary News. San Francisco Estuary Institute: Richmond, CA.
2012. 
Evaluation of Episodic Suspended Sediment Transport in San Francisco Bay, California through Remote Sensing. SFEI Contribution No. 670. SFEI: Richmond, CA. p 18.
2012. 
Historical Ecology of the McCormack-Williamson Tract: A Landscape Framework for Restoration. SFEI Contribution No. 674. Aquatic Science Center / San Francisco Estuary: Richmond, CA.
. 2012. 2012. Long-term Performance and Effectiveness Evaluation For Three Critical Coastal Area Watersheds.

Monitoring and Results for El Cerrito Rain Gardens. San Francisco Estuary Institute: Richmond, CA.
2012. 
Napa River Watershed Profile: Past and Present Characteristics with Implications for Future Management of the Changing Napa River Valley. San Francisco Estuary Institute: Richmond, CA. p 172.
2012. 
Napa Valley Historical Ecology Atlas: Exploring a Hidden Landscape of Transformation and Resilience. UC Press: Berkeley. p 223.
2012. Perfluoroalkyl compounds (PFCs) in wildlife from an urban estuary. Journal of Environmental Monitoring 14, 146-154.
2012. Pollutant Monitoring in the North Richmond Pump Station: A Pilot Study for Potential Dry Flow and Seasonal First Flush Diversion for Wastewater Treatment. San Francisco Estuary Institute: Richmond, CA.
2012. 
Pollutants of Concern (POC) Loads Monitoring Data, Water Year (WY) 2011. San Francisco Estuary Institute: Richmond, CA.
2012. 
The Pulse of the Delta: Linking Science & Management through Regional Monitoring. Aquatic Science Center: Richmond, CA.
. 2012. 
Reducing methylmercury accumulation in the food webs of San Francisco Bay and its local watersheds. Environmental Research 119, 3-26.
2012. 
Sacramento-San Joaquin Delta Historical Ecology Investigation: Exploring Pattern and Process. SFEI Contribution No. 672. SFEI: Richmond.
2012. The Sacramento-San Joaquin Delta has been transformed from the largest wetland system on the Pacific Coast of the United States to highly productive farmland and other uses embodying California’s water struggles. The Delta comprises the upper extent of the San Francisco Estuary and connects two-thirds of California via the watersheds that feed into it. It is central to the larger California landscape and associated ecosystems, which will continue to experience substantial modification in the future due to climate change and continued land and water use changes. Yet this vital ecological and economic link for California and the world has
been altered to the extent that it is no longer able to support needed ecological functions. Approximately 3% of the Delta’s historical tidal wetland extent remains wetland today; the Delta is now crisscrossed with agricultural ditches replacing the over 1,000 miles of branching tidal channels.
Imagining a healthy Delta ecosystem in the future and taking bold, concrete steps toward that future requires an understanding and vision of what a healthy ecosystem looks like. For a place as extensive, unique, and modified as the Delta, valuable knowledge can be acquired through the study of the past, investigating the Delta as it existed just prior to the substantial human modifications of the last 160 years. Though the Delta is irrevocably altered, this does not mean that the past is irrelevant. Underlying geologic and hydrologic processes still influence the landscape, and native species still ply the waters, soar through the air, and move across the land. Significant opportunities are available to strategically reconnect landscape components in ways that support ecosystem resilience to both present and future stressors.



Selenium Fractionation and Speciation in Final Effluents of Selected San Francisco Bay Area Municipal Wastewater Treatment Facilities. San Francisco Estuary Institute: Richmond.
2012. 
Upper Penitencia Creek Historical Ecology Assessment. SFEI Contribution No. 664. SFEI: Richmond, CA.
2012. 
Watching Our Watersheds: Santa Clara Valley Past, Google Earth KMZ files: Santa Clara Valley historical points of interest, stream courses and habitats.
2012. 
2009 Annual Monitoring Results. SFEI Contribution No. 629. San Francisco Estuary Institute: Oakland, CA.
. 2011. 
2011 Annual Monitoring Results: A report of the Regional Monitoring Program for Water Quality in the San Francisco Estuary. San Francisco Estuary Institute.
. 2011. 
Age Estimates and Pollutant Concentrations of Sediment Cores from San Francisco Bay and Wetlands. San Francisco Estuary Institute: Richmond, CA.
2011. 
Apparent Tolerance of Common Tern (Sterna hirundo) Embryos to a Pentabrominated Diphenyl Ether Mixture (DE-71). USGS-Patuxent Wildlife Research Center: Beltsville, Maryland.
2011. 
Assessment Framework as a Tool for Integrating and Communicating Watershed Health Indicators for the San Francisco Estuary. SFEI Contribution No. 634. San Francisco Estuary Institute: Oakland, CA.
2011. 
Bay Area Aquatic Resources Inventory (BAARI) . SFEI Contribution No. 746. p 79.
. 2011. 
Bioretention Monitoring at the Daly City Library (Case Study Technical Report). San Francisco Estuary Institute: Oakland, CA.
2011. 
Cardiac toxicity of 5-ring polycyclic aromatic hydrocarbons is differentially dependent on the aryl hydrocarbon receptor 2 isofrom during zebrafish development. Toxicology and Applied Pharmacology 257, 242-249.
2011. 
Contaminants in Sport Fish from the California Coast, 2009: Summary Report on Year One of a Two-Year Screening Survey. California State Water Resources Control Board: Sacramento.
2011. 
Contaminants of Emerging Concern in the San Francisco Estuary: Triclosan and Triclocarban. SFEI: Oakland.
2011. 
Contra Costa County 1939 Aerial Photomosaic, GIS layer containing orthorectified historical aerial imagery of Contra Costa County from 1939.
. 2011. Development of Regional Suspended Sediment and Pollutant Load Estimates for San Francisco Bay Area Tributaries using the Regional Watershed Spreadsheet Model (RWSM): Year 1 Progress Report. SFEI Contribution No. 666. SFEI: Richmond, CA. p 126.
2011. 
DGT (Diffusive Gradient in Thinfilm) as a tool to assess sources of bioavailable methylmercury in San Francisco Bay. SFEI Contribution No. 640. SFEI: Oakland.
2011. 
East Contra Costa Historical Ecology Study. SFEI Contribution No. 648. SFEI: Oakland.
2011. 



East Contra Costa Historical Ecology Study GIS data, GIS data produced for the East Contra Costa County Historical Ecology Study.
2011. 

Ecological Monitoring & Assessment Framework: Stream Ecosystem Condition Profile: Coyote Creek Watershed . San Francisco Estuary Institute: Oakland, CA. p 109.
. 2011. 

Final Project Report for the Demonstration Project in Three Critical Coastal Area Watersheds. San Francisco Estuary Institute: Richmond, CA.
2011. 
Guadalupe River Watershed Loading HSPF Model: Year 3 final progress report. SFEI: Richmond, CA.
2011. 
Historical Ecology of the lower Santa Clara River, Ventura River, and Oxnard Plain: an analysis of terrestrial, riverine, and coastal habitats. SFEI Contribution No. 641. SFEI: Oakland.
2011. 

Historical Wetlands of the Southern California Coast: An Atlas of US Coast Survey T-sheets, 1851-1889. SFEI Contribution No. 586. SFEI: Oakland.
2011. 


