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2013

Weisberg, S. B.; Thompson, B.; Ranasinghe, J. A.; Lowe, S.; Melwani, A. 2013. Benthic macrofaunal assemblages of the San Francisco Estuary and Delta, USA. Environmental Monitoring Assessment.

(642.77 KB)

2011

Thompson, B.; Weisberg, S.; Melwani, A.; Lowe, S.; Ranasinghe, J. A.; Cadien, D. B.; Dauer, D. M.; Diaz, R. J.; Fields, W.; Kellogg, M.; et al. 2011. Low levels of agreement among experts using best professional judgment to assess benthic condition in the San Francisco Estuary and Delta. Ecological Indicators 12 (1), 167-173 . SFEI Contribution No. 636.

(177.24 KB)

2010

Weisberg, S. B.; Thompson, B.; Huff, D. D.; Oakden, J. M.; Hyland, J. L.; H. II, L.; Velarde, R. G.; Cadien, D. B.; Ranasinghe, J. A.; Welch, K.; et al. 2010. Habitat-Related Benthic Macrofaunal Assemblages of Bays and Estuaries of the Western United States. Integrated Environmental Assessment and Management 8 (4), 638-648.

(213.19 KB)

2009

Ritter, K. J.; Huff, D. D.; Oakden, J. M.; Thompson, B.; Velarde, R. G.; Cadien, D. B.; Ranasinghe, J. A.; Weisberg, S. B.; Smith, R. W.; Montagne, D. E. 2009. Calibration and evaluation of five indicators of benthic community condition in two California bay and estuary habitats. Marine Pollution Bulletin 59 (1-3), 5-13.

(332.88 KB)

Thompson, B.; Melwani, A. R.; Hunt, J. A. 2009. Estimated Sediment Contaminant Concentrations Associated with Biological Impacts at San Diego Bay Cleanup Sites. SFEI Contribution No. 584. San Francisco Estuary Institute: Oakland, Ca.

(1.25 MB)

2008

Melwani, A. R.; Thompson, B. 2008. The Influence of Chemical and Physical Factors on Macrobenthos in the San Francisco Estuary. SFEI Contribution No. 543.

(1.55 MB)

Weisberg, S. B.; Word, J. Q.; Velarde, R. G.; Reish, D. J.; Oliver, J.; Diener, D.; Dauer, D. M.; Cadien, D. B.; Montagne, D. E.; Ranasinghe, J. A.; et al. 2008. The level of agreement among experts applying best professional judgment to assess the condition of benthic infaunal communities. Ecological Indicators: Integrating, Monitoring, Assessment and Management 8, 389-394.

(701.59 KB)

Thompson, B. 2008. Relationships among SQO indicators in San Francisco Bay and continuing development of methods.

Thompson, B.; Lowe, S. 2008. Sediment Quality Assessments in the San Francisco Estuary. SFEI Contribution No. 574. San Francisco Estuary Institute: Oakland, Ca.

(2.52 MB)

2007

Thompson, B.; Spies, R. M.; Ohlendorf, H.; Neale, J.; Kuwabara, J.; Hunt, J. A.; Brown, C. L.; Adelsbach, T.; Schwarzbach, S.; Taberski, K. 2007. Biological Effects of Anthropogenic Contaminants in the San Francisco Estuary. Environmental Research 105, 156-174 . SFEI Contribution No. 495.

(528.14 KB)

Thompson, B.; Melwani, A. R.; Lowe, S.; Greenfield, B. K.; Robinson, A. 2007. Indicators of Anthropogenic Contamination in the Estuary.

(2.65 MB)

Anderson, B.; Taberski, K.; Carr, R. S.; Hunt, J.; Phillips, B. M.; Thompson, B.; Lowe, S. 2007. Patterns and trends in sediment toxicity in the San Francisco Estuary. Environmental Research 105 (1), 145-155 . SFEI Contribution No. 496.

Lowe, S.; Anderson, B.; Phillips, B. M.; Hunt, J.; Taberski, K.; Carr, R. S.; Thompson, B. 2007. Patterns and trends in sediment toxicity in the San Francisco Estuary. Environmental Research 105, 145-155.

(972.24 KB)

2005

Lowe, S.; Hoenicke, R.; Taberski, K.; Smith, R.; Thompson, B.; Stevens, D.; Leatherbarrow, J. E. 2005. Re-design Process of the San Francisco Estuary Regional Monitoring Program for Trace Substances (RMP) Status & Trends Monitoring Component for Water and Sediment. SFEI Contribution No. 507. San Francisco Estuary Institute: Oakland, CA.

(1.72 MB)

Melwani, A. R.; Lowe, S.; Ross, J. R. M.; Smith, R.; Thompson, B. 2005. Spatial Patterns of Sediment Contaminant Mixtures in San Francisco Bay. SFEI Contribution No. 450.

2004

Lowe, S.; Thompson, B. 2004. Assessment of macrobenthos resonse to sediment contamination in the San Francisco Estuary, USA. Environmental Toxicology and Chemistry 23 . SFEI Contribution No. 60.

(213.18 KB)

Lowe, S.; Thompson, B. 2004. Assessment of Macrobenthos Response to Sediment Contamination in the San Francisco Estuary (published in Environmental Toxicology and Chemistry). Environmental Toxicology and Chemistry 23, 2178.

Davis, J. A.; Lowe, S.; Anderson, B.; Hunt, J.; Thompson, B. 2004. Conceptual Framework and Rationale for the Exposure and Effects Pilot Study. SFEI Contribution No. 317. San Francisco Estuary Institute: Oakland.

(634.79 KB)

Gunther, A.; Thompson, B. 2004. Development of Environmental Indicators of the Condition of San Francisco Estuary. SFEI Contribution No. 113. San Francisco Estuary Institute: Oakland.

(770.99 KB)

Ranasinghe, J. A.; Lowe, S.; Smith, R.; Thompson, B. 2004. Evaluation of Benthic Assessment Methodology in Southern California Bays and San Francisco Bay. Southern California Coastal Water Research Project: Westminster. CA.

(1.44 MB)

Lowe, S.; Hoenicke, R.; Taberski, K.; Smith, R.; Thompson, B.; Stevens, D.; Leatherbarrow, J. E. 2004. Re-design Process of the San Francisco Estuary Regional Monitoring Program for Trace Substances (RMP). SFEI Contribution No. 109. San Francisco Estuary Institute: Oakland, CA.

(1.72 MB)

2003

Lowe, S.; Phillips, B. M.; Hoenicke, R.; Tjeerdema, R. S.; Thompson, B.; Anderson, B. S.; Hunt, J. W. 2003. Causes of Sediment Toxicity to Mytilus galloprovincialis in San Francisco Bay, California. Archive of Environmental Contamination Toxicology 45, 486-491 . SFEI Contribution No. 296.

Lowe, S.; Ross, J. R. M.; Thompson, B. 2003. CISNet San Pablo Bay Network of Environmental Stress Indicators; Benthic Microfauna. SFEI Contribution No. 299. San Francisco Estuary Institute: Oakland, CA.

Lowe, S.; Thompson, B.; H. II, L. 2003. Estuarine and scalar patterns of invasion in the soft-bottom benthic communities of the San Francisco Estuary. Biological Invasions 5, 85-102 . SFEI Contribution No. 292.

Davis, J. A.; Lowe, S.; Anderson, B.; Phillips, B. M.; Hunt, J. A.; Tjeerdema, R. S.; Taberski, K.; Thompson, B.; Nicely, P. 2003. Summary of 10 years of sediment toxicity monitoring for the San Francisco Estuary RMP. SFEI Contribution No. 281. San Francisco Estuary Institute.

(3.39 MB)

2002

Lowe, S.; Hoenicke, R.; Grosso, C.; Thompson, B.; Stevens, D.; Leatherbarrow, J. E.; Smith, R. T.; DIWG,. 2002. The Design Process for the Status and Trends Component.

(6.15 MB)

Thompson, B. 2002. SFEI: More Than Just RMP (2002 RMP Annual Meeting).

(1011 KB)

2000

Lowe, S.; Thompson, B.; Kellogg, M. 2000. Macrobenthic Assemblages of the San Francisco Bay-Delta, and their Responses to Abiotic Factors.

Davis, J. A.; Hoenicke, R.; Gunther, A.; Thompson, B. 2000. An overview of contaminant-related issues identified by monitoring in San Francisco Bay. Environ. Mon. Assess. 64, 409-419 . SFEI Contribution No. 350.

Lowe, S.; Thompson, B.; Kellogg, M. 2000. Results of the Benthic Pilot Study 1994 - 1997, Part 1. SFEI Contribution No. 39. San Francisco Estuary Institute: Richmond, CA.

(6.51 MB)

1999

Thompson, B.; Daum, T. 1999. Atlas of Sediment Contamination, Toxicity, and Benthic Assemblages in San Francisco Bay. SFEI Contribution No. 38. San Francisco Estuary Institute: Richmond, CA.

Lowe, S.; Thompson, B.; H. II, L. 1999. Impacts of Nonindigenous Species on Subtidal Benthic Assemblages in the San Francisco Estuary. SFEI Contribution No. 329. p 16.

Davis, J. A.; Hoenicke, R.; Gunther, A.; Thompson, B. 1999. An Overview of Contaminant-Related Issues Identified by Monitoring in San Francisco Bay - Abstract.

Davis, J. A.; Young, D.; H. III, L.; Hornberger, M.; Gregg, J.; Delorey, J.; Amdur, J.; Daum, T.; Luoma, S. N.; Abu-Saba, K. E.; et al. 1999. Recommendations for Improvement of RMP Sediment Monitoring. San Francisco Estuary Institute: Richmond, CA.

(104.89 KB)

Hoenicke, R.; Gunther, A.; Thompson, B.; Davis, J. A. 1999. Regional Monitoring in San Francisco Bay: A Summary of Key Issues. SFEI Contribution No. 36.

Anderson, B.; Phillips, B. M.; Hunt, J.; Taberski, K.; Thompson, B. 1999. Relationship Between Sediment Toxicity and Contamination in San Francisco Bay (Abstract). Marine Environmental Research 285-309 . SFEI Contribution No. 332.

Anderson, B.; Phillips, B. M.; Hunt, J.; Taberski, K.; Thompson, B. 1999. Relationships Between Sediment Toxicity and Contamination in San Francisco Bay. Marine Environmental Research 48, 285-309 . SFEI Contribution No. 27.

Lowe, S.; Thompson, B.; Gravitz, L. 1999. Sediment Conditions near Wastewater Discharges in San Francisco Bay. San Francisco Estuary Institute: Oakland, CA.

1998

Anderson, B.; Hunt, J.; Taberski, K.; Thompson, B.; Phillips, A. 1998. Relationship Between Sediment Contamination and Toxicity in San Francisco Bay.

1997

Davis, J. A.; Hoenicke, R.; Thompson, B.; Haskins, J. 1997. Bioaccumulation of contaminants by transplanted bivalves in the San Francisco Estuary: A summary of status and trends with emphasis on Local Effects Monitoring Programs. SFEI Contribution No. 11. (Bay Area Dischargers Association) San Francisco Estuary Institute: Richmond, CA. pp 171-175.

Thompson, B.; Chapman, J. 1997. General guidelines for using the sediment quality triad. Mar. Poll. Bull 34, 368-372 . SFEI Contribution No. 198.

Anderson, B.; Phillips, B. M.; Hunt, J.; Taberski, K.; Thompson, B. 1997. Relationship Between Sediment Toxicity and Contamination in San Francisco Bay. SFEI Contribution No. 27. San Francisco Estuary Institute: Oakland, CA. pp 285-309.

1996

Davis, J. A.; Hoenicke, R.; Thompson, B.; Haskins, J. 1996. Bioaccumulation of Contaminants by Transplanted Bivalves in the San Francisco Estuary: Status and Trends. SFEI Contribution No. 191. San Francisco Estuary Institute: Richmond, CA. p 80.

1994

Thompson, B. 1994. Research Recommendations for the San Francisco Estuary: Understanding the Ecosystem. SFEI Contribution No. 181. San Francisco Estuary Institue: Richmond, Ca. p 49.

Smith, R.; Thompson, B. 1994. Towards an Optimal Sampling Design for the RMP. SFEI Contribution No. 6. San Francisco Estuary Institute: Richmond, CA.

1992

Thompson, B.; O'Connor, J. M.; Davis, J. A. 1992. Bioaccumulation of contaminants by bivalve molluscs in the vicinity of municipal wastewater discharges to San Francisco Bay: Wet season results, 1991/1992. SFEI Contribution No. 170. Aquatic Habitat Institute: Richmond, CA.