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Smith, R.; Thompson, B. 1994. Towards an Optimal Sampling Design for the RMP. SFEI Contribution No. 6. San Francisco Estuary Institute: Richmond, CA.
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Thompson, B.; Lowe, S. 2008. Sediment Quality Assessments in the San Francisco Estuary. SFEI Contribution No. 574. San Francisco Estuary Institute: Oakland, Ca.
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Lowe, S.; Thompson, B.; Kellogg, M. 2000. Results of the Benthic Pilot Study 1994 - 1997, Part 1. SFEI Contribution No. 39. San Francisco Estuary Institute: Richmond, CA.
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Thompson, B. 1994. Research Recommendations for the San Francisco Estuary: Understanding the Ecosystem. SFEI Contribution No. 181. San Francisco Estuary Institue: Richmond, Ca. p 49.
Anderson, B.; Phillips, B. M.; Hunt, J.; Taberski, K.; Thompson, B. 1997. Relationship Between Sediment Toxicity and Contamination in San Francisco Bay. SFEI Contribution No. 27. San Francisco Estuary Institute: Oakland, CA. pp 285-309.
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Gunther, A.; Thompson, B. 2004. Development of Environmental Indicators of the Condition of San Francisco Estuary. SFEI Contribution No. 113. San Francisco Estuary Institute: Oakland.
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Davis, J. A.; Lowe, S.; Anderson, B.; Hunt, J.; Thompson, B. 2004. Conceptual Framework and Rationale for the Exposure and Effects Pilot Study. SFEI Contribution No. 317. San Francisco Estuary Institute: Oakland.
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Lowe, S.; Ross, J. R. M.; Thompson, B. 2003. CISNet San Pablo Bay Network of Environmental Stress Indicators; Benthic Microfauna. SFEI Contribution No. 299. San Francisco Estuary Institute: Oakland, CA.
Thompson, B.; Daum, T. 1999. Atlas of Sediment Contamination, Toxicity, and Benthic Assemblages in San Francisco Bay. SFEI Contribution No. 38. San Francisco Estuary Institute: Richmond, CA.
Miscellaneous
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Journal Article (Peer-Reviewed)
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Thompson, B.; Chapman, J. 1997. General guidelines for using the sediment quality triad. Mar. Poll. Bull 34, 368-372 . SFEI Contribution No. 198.
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Lowe, S.; Thompson, B. 2004. Assessment of macrobenthos resonse to sediment contamination in the San Francisco Estuary, USA. Environmental Toxicology and Chemistry 23 . SFEI Contribution No. 60.
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