Publications for Resilient Landscapes Program
2019
Making Nature's City. Richmond, CA: San Francisco Estuary Institute; 2019 . Report No.: 947.
(10.41 MB)
(33.4 MB) .


Urban Ecological Planning Guide for Santa Clara Valley. Richmond, CA: San Francisco Estuary Institute; 2019 . Report No.: 941.
(42.6 MB) .

San Francisco Bay Shoreline Adaptation Atlas: Working with Nature to Plan for Sea Level Rise Using Operational Landscape Units. Richmond, CA: SFEI & SPUR; 2019 p. 255. Report No.: 915.
(259.64 MB)
(84.6 MB)
(20.93 MB) .



West Valley Watershed Assessment 2018: Baseline Ecological Condition Assessment of Southwest San Francisco Bay Creeks in Santa Clara County; Calabazas, San Tomas Aquino, Saratoga, Sunnyvale East and West. . Richmond: San Francisco Estuary Institute; 2019 . Report No.: 944.
(5.02 MB) .

2018
Resilient Landscape Vision for the Calabazas Creek, San Tomas Aquino Creek, and Pond A8 Area: Bayland-Creek Reconnection Opportunities. Richmond, CA: San Francisco Estuary Institute-Aquatic Science Center; 2018 p. 40. Report No.: 870.
(68.63 MB)
(20.14 MB) .


Sycamore Alluvial Woodland Planting Guide. 2018 . Report No.: 901.
(1.22 MB) .

Petaluma Valley Historical Hydrology and Ecology Study. Richmond, CA: San Francisco Estuary Institute; 2018 . Report No.: 861.
(121.7 MB)
(43.68 MB) .


Sediment Supply to San Francisco Bay. Richmond, CA: San Francisco Estuary Institute ; 2018 . Report No.: 842.
(1.74 MB) .

Observational Study of Sycamore Regeneration at two sites in Santa Clara County after the 2016-2017 Water Year. 2018 . Report No.: 874.
(8.44 MB) .

Resilient Landscape Vision for Upper Penitencia Creek. Richmond, CA: San Francisco Estuary Institute - Aquatic Science Center; 2018 . Report No.: 894.
(67.6 MB)
(11.75 MB) .


North Bay Mercury Biosentinel Project: 2016 - 2017. 2018 . Report No.: 868.
(1.59 MB) .

2017
Lower Peninsula Watershed Condition Assessment 2016: Southwest San Francisco Bay, Santa Clara County, San Francisquito to Stevens Creeks. Technical memorandum prepared for the Santa Clara Valley Water District. . Richmond: San Francisco Estuary Institute; 2017 p. 53. Report No.: 809.
(5.17 MB) .

Re-Oaking Silicon Valley: Building Vibrant Cities with Nature. Richmond, CA: San Francisco Estuary Institute; 2017 . Report No.: 825.
(65.64 MB)
(31.88 MB) .


Historical Ecology and Landscape Change in the Central Laguna de Santa Rosa. Richmond, CA: San Francisco Estuary Institute - Aquatic Science Center; 2017 . Report No.: 820.
(94.51 MB)
(39.07 MB) .


Resilient By Design Briefing Book [Internet]. 2017 . http://www.resilientbayarea.org/briefing-book/
(13.8 MB) .

Changing Channels: Regional Information for Developing Multi-benefit Flood Control Channels at the Bay Interface. Flood Control 2.0. Richmond, CA: San Francisco Estuary Institute; 2017 . Report No.: 801.
(62.69 MB)
(23.02 MB) .


Sycamore Alluvial Woodland: Habitat Mapping and Regeneration Study. 2017 . Report No.: 816.
(53.95 MB)
(21.31 MB) .


Tijuana River Valley Historical Ecology Investigation. Richmond, CA: San Francisco Estuary Institute - Aquatic Science Center ; 2017 p. 230. Report No.: 760.
(232.2 MB)
(73.63 MB) .


Applied Aquatic Science: A Business Plan for EcoAtlas. Richmond, CA: San Francisco Estuary Institue; 2017 .
(1.69 MB)
(323.4 KB) .


Delta Landscapes Executive Summary. 2017 . Report No.: 853.
(23.99 MB) .

Delta Landscapes: A Delta Renewed User Guide. 2017 . Report No.: 854.
(28.86 MB) .

2016
Estuaries: Life on the edge. In Ecosystems of California. Berkeley, CA: University of California Press; 2016. pp. 359-388. .
From past patterns to future potential: using historical ecology to inform river restoration on an intermittent California river. Landscape Ecology [Internet]. 2016;31(3):20. http://link.springer.com/article/10.1007%2Fs10980-015-0264-7 .
Primary Production in the Delta: Then and Now. San Francisco Estuary and Watershed Science. 2016;14(3).
(864.19 KB) .

RipZET: Documentation of Tool Demonstration in Marin County. 2016.
(2.86 MB)

An Introduction to EcoAtlas: Applied Aquatic Science. Richmond, CA: San Francisco Estuary Institute; 2016 p. 16 pages.
(5.84 MB) .

San Francisco Bay Shore Inventory: Mapping for Sea Level Rise Planning. Richmond, CA: San Francisco Estuary Institute; 2016 . Report No.: 779.
(20.33 MB) .

San Francisquito Creek Baylands: Landscape Change Metrics Analysis. Flood Control 2.0. Richmond, CA: San Francisco Estuary Institute - Aquatic Science Center; 2016 p. 12. Report No.: 784.
(6.19 MB) .

A Delta Renewed: A Guide to Science-Based Ecological Restoration in the Sacramento-San Joaquin Delta. Delta Landscapes Project. Richmond, CA: San Francisco Estuary Institute - Aquatic Science Center; 2016 . Report No.: 799.
(121.28 MB)
(17.67 MB) .


Primary Production in the Sacramento-San Joaquin Delta: A Science Strategy to Quantify Change and Identify Future Potential. 2016 . Report No.: 781.
(4.26 MB) .

Framework to coordinate water quality improvement and wildlife habitat conservation to protect California streams, wetlands, and riparian areas. Richmond, CA: San Francisco Estuary Institute; 2016 p. 89. Report No.: 776.
(6.62 MB) .

Resilient Landscape Vision for Lower Walnut Creek: Baseline Information and Management Strategies. Flood Control 2.0. Richmond, CA: San Francisco Estuary Institute-Aquatic Science Center; 2016 . Report No.: 782.
(17.42 MB)
(44.8 MB) .


Relationship between wetland size and CRAM condition scores for depressional wetlands. 2016 .
(652.08 KB) .

Mission Bay Historical Ecology Reconnaissance Study: Data Collection Summary (Technical Report). 2016 . Report No.: 777.
(3.44 MB) .

Depressional wetland habitat development curve. 2016 .
(451.13 KB) .

Relationship between wetland condition, stress, and buffer. 2016 .
(15.06 MB) .

Upper Pajaro River Watershed Condition Assessment 2015. Technical memorandum prepared for the Santa Clara Valley Water District - Priority D5 Project. Richmond, CA: San Francisco Estuary Institute; 2016 p. 60. Report No.: 810.
(6.46 MB) .

CRAM Fieldwork 2015 to Support Caltrans Project Tasks 2 & 3. 2016 .
(716.68 KB) .

Ecological implications of modeled hydrodynamic changes in the upper San Francisco Estuary: Phase II Technical Memorandum. 2016 . Report No.: 786.
(955.14 KB) .

Lower Peninsula Watershed Condition Assessment 2016. Technical memorandum prepared for the Santa Clara Valley Water District - Priority D5 Project. Richmond, CA: San Francisco Estuary Institute; 2016 p. 49. Report No.: 809.
(4.36 MB) .

2015
Functional Flows in Modified Riverscapes: Hydrographs, Habitats and Opportunities. BioScience [Internet]. 2015;. http://bioscience.oxfordjournals.org/content/65/10/963 .
Stream Health of the Coyote Creek and Guadalupe River Watersheds using WRAMP. Richmond, CA; 2015.
(5.69 MB) .

The Tijuana River Valley: An Ecological Look into the Past. 2015.
(49.38 MB) .

Decentralized Wastewater Discharges and Multiple Benefit Natural Infrastructure: Preliminary Analysis and Next Steps (Final Project Report). East Bay Dischargers Authority ; 2015 .
(7.78 MB) .

Novato Creek Baylands Vision: Integrating ecological functions and flood protection within a climate-resilient landscape. 2015 . Report No.: 764.
(21.5 MB) .

Mt. Wanda Historical Ecology Investigation. Richmond, CA: San Francisco Estuary Institute - Aquatic Science Center; 2015 p. 51. Report No.: 743.
(20.92 MB)
(57.9 MB) .


Landscape Resilience Framework: Operationalizing Ecological Resilience at the Landscape Scale [Internet]. Richmond, CA: San Francisco Estuary Institute - Aquatic Science Center; 2015 . Report No.: 752. http://resilientsv.sfei.org/
(5.18 MB) .

Vision for a Resilient Silicon Valley Landscape. 2015 . Report No.: 753.
(21.78 MB) .

Shifting Shores: Marsh Expansion and Retreat in San Pablo Bay. 2015 . Report No.: 751.
(93.2 MB)
(31.73 MB) .


RipZET: The Riparian Zone Estimation Tool version 2.0. Richmond, CA: San Francisco Estuary Institute; 2015 .
(5.11 MB) .

The Baylands and Climate Change: What We Can Do. Baylands Ecosystem Habitat Goals Science Update 2015. Oakland, CA: California State Coastal Conservancy; 2015 .
(31.68 MB)

Novato Creek Baylands Historical Ecology Study. Richmond, CA: San Francisco Estuary Institute - Aquatic Science Center; 2015 . Report No.: 740.
(27.13 MB) .

RipZET User's Manual v1.0. Richmond, CA: San Francisco Estuary Institute; 2015 .
(5.28 MB) .

Riparian Zone Estimation Tool Hydrologic Connectivity Module: Documentation and Validation of Selected Methodology. 745: San Francisco Estuary Institute; 2015 .
(3.15 MB) .

2014
What is Flood Control 2.0 (Podcast) [Internet]. 2014. http://www.yourwetlands.org/podcasts.php
(2.67 MB) .

EcoAtlas and CRAM Factsheet. 2014.
(26.19 MB) .

Futures Past: Exploring California Landscapes with SFEI. Boom: A Journal of California [Internet]. 2014;4(3):24. http://www.boomcalifornia.com/2014/09/futures-past
(6.67 MB) .

Futures Past Exploring California landscapes with the San Francisco Estuary Institute. Boom: The Journal of California . 2014;4(3):4-27. .
Delta Landscape Metrics: Creating a Spatial Framework to Inform Restoration Planning [Internet]. Sacramento, CA; 2014. http://sfei.org/projects/delta-landscapes-project
(8.36 MB) .

RipZET: A GIS-Based Decision Support Tool for Estimating Riparian Zones at the Watershed and/or Project Scale. Richmond, CA; 2014.
(3.81 MB) .

North Bay Mercury Biosentinel Project (December 2014 Report). Richmond, CA: San Francisco Estuary Institute; 2014 . Report No.: 738.
(2.88 MB) .

A Delta Transformed: Ecological Functions, Spatial Metrics, and Landscape Change in the Sacramento-San Joaquin Delta [Internet]. Richmond, CA: San Francisco Estuary Institute - Aquatic Science Center; 2014 . Report No.: 729. http://sfei.org/projects/delta-landscapes-project
(58.56 MB)
(11.76 MB) .


Initial Protocol to Identify and Delineate the Head of Tide Zone in San Francisco Bay Tributaries [Internet]. Richmond, CA: San Francisco Estuary Institute; 2014 . Report No.: 719. http://www.sfei.org/projects/head-tide
(8.39 MB) .

Northern San Diego County Lagoons Historical Ecology Investigation [Internet]. Richmond, CA: San Francisco Estuary Institute - Aquatic Science Center; 2014 p. 215. Report No.: 722. http://www.sfei.org/HE_San_Diego_Lagoons
(305.02 MB)
(50.9 MB) .


Landscape Scale Management Strategies for Arroyo Mocho and Arroyo Las Positas: Process-Based Approaches for Dynamic, Multi-Benefit Urban Channels. Richmond, CA: San Francisco Estuary Institute; 2014 . Report No.: 714.
(45.32 MB) .

Wetlands of the Southern California Coast: Historical Extent and Change Over Time [Internet]. Costa Mesa, Richmond, Northridge: Southern California Coastal watershed Research Project (SCCWRP), San Francisco Estuary Institute (SFEI), CSU Northridge Center for Geographical Studies; 2014 . Report No.: 720. http://www.sfei.org/projects/SoCalTSheets_2
(5.96 MB) .

Creating Landscape Profiles of Aquatic Resource Abundance, Diversity and Condition. Richmond, CA: San Francisco Estuary Institute - Aquatic Science Center; 2014 p. 21. Report No.: 725.
(651.67 KB) .

Santa Rosa Plain Wetlands Profile: A Demonstration of the CaliforniaWetland and Riparian Area Monitoring Plan. Richmond, CA: San Francisco Estuary Institute - Aquatic Science Center; 2014 p. 46. Report No.: 726.
(3.03 MB) .

Historical Changes in Channel Alignment along Lower Laguna de Santa Rosa and Mark West Creek. Richmond, CA: SFEI; 2014 .
(9.78 MB) .

2013
A landscape ecology analysis of San Francisco Bay-Delta marsh then (1850) and now. Oakland, CA; 2013.
(20.08 MB) .

Statistical Design, Analysis, and Graphics for the Guadalupe River Watershed Assessment 2012. Richmond, CA: San Francisco Estuary Institute; 2013 . Report No.: 687.
(4.88 MB) .

An Assessment of the South Bay Historical Tidal-Terrestrial Transition Zone [Internet]. Richmond, CA: San Francisco Estuary Institute; 2013 . Report No.: 693. http://www.sfei.org/TZone_SouthSFBay
(7.87 MB) .

Riparian Zone Estimation Tool: Hydrologic Connectivity Module Field Plan. Richmond, CA: San Francisco Estuary Institute; 2013 .
(5.1 MB) .

Alameda Creek Watershed Historical Ecology Study [Internet]. Richmond, CA: San Francisco Estuary Institute; 2013 . http://www.sfei.org/projects/AlamedaCreekHE
(335.05 MB)
(163.08 MB) .


Exploring the Traditional Use of Fire in the Coastal Mountains of Central California [Internet]. Joint Fire Science Program; 2013 . https://www.firescience.gov/JFSP_advanced_search_results_detail.cfm?jdbid=%24%26Z%3B%3BV%40%20%20%0A
(2.37 MB) .

Landscape Patterns and Processes of the McCormack-Williamson Tract and Surrounding Area: A framework for restoring a resilient and functional landscape [Internet]. Richmond, CA: SFEI-ASC; 2013 . Report No.: 674. http://www.sfei.org/projects/delta-mccormack-williamson-tract
(21.34 MB) .

2012
Napa Valley Historical Ecology Atlas: Exploring a Hidden Landscape of Transformation and Resilience [Internet]. Berkeley: UC Press; 2012. p. 223. http://www.sfei.org/projects/napa-valley-historical-ecology-atlas .
Watching Our Watersheds: Santa Clara Valley Past [Internet]. Santa Clara Valley Water District; 2012. p. Google Earth KMZ files: Santa Clara Valley historical points of interest, stream courses and habitats. http://www.valleywater.org/WOW.aspx
(10.61 MB) .

Delta Historical Ecology GIS Data [Internet]. Richmond: San Francisco Estuary Institute - Aquatic Science Center; 2012. http://www.sfei.org/DeltaHEStudy
(10.88 MB) .

Historical Ecology and Landscape-Scale Restoration. Application to the McCormack-Williamson Tract. Sacramento, CA; 2012.
(110.26 MB) .

Developing Tools for Landscape-Scale Restoration in the Delta. Sacramento, CA; 2012.
(4.59 MB) .

Building a Landscape Perspective for the Delta: Lessons from Historical Ecology. Sacramento, CA; 2012.
(2.21 MB) .

Upper Penitencia Creek Historical Ecology Assessment [Internet]. Richmond, CA: SFEI; 2012 . Report No.: 664. http://www.sfei.org/UpperPen_HE
(16.48 MB) .

Sacramento-San Joaquin Delta Historical Ecology Investigation: Exploring Pattern and Process [Internet]. Richmond: SFEI; 2012 . Report No.: 672. http://www.sfei.org/DeltaHEStudy
(252.87 MB)
(135.09 MB)
(44.2 MB) .



Historical Ecology of the McCormack-Williamson Tract: A Landscape Framework for Restoration. Richmond, CA: Aquatic Science Center / San Francisco Estuary; 2012 . Report No.: 674. .
2011
Oak Landscapes in the Recent Past. In: . Oaks in the Urban Landscape: Selection, Care, and Preservation. Richmond, CA: University of California Agriculture and Natural Resources; 2011. .
Santa Clara Valley Historical Ecology GIS Data [Internet]. 2011. http://www.sfei.org/projects/santa-clara-valley-historical-ecology-gis
(15.59 MB)
(59.08 KB) .


Contra Costa County 1939 Aerial Photomosaic [Internet]. Oakland, CA: SFEI; 2011. p. GIS layer containing orthorectified historical aerial imagery of Contra Costa County from 1939. http://oskicat.berkeley.edu/record=b18637538~S1 .
Ventura Historical Ecology Study GIS data [Internet]. 2011. http://www.sfei.org/projects/VenturaHE
(47.1 KB)
(2.42 MB) .


East Contra Costa Historical Ecology Study GIS data [Internet]. 2011. p. GIS data produced for the East Contra Costa County Historical Ecology Study. http://www.sfei.org/HEEastContraCosta
(5.37 MB)
(3.1 MB) .


Habitat Characteristics of Past Delta Landscapes: Knowledge for Improving Future Ecosystem Resilience [Internet]. Folsom, CA; 2011. http://www.sfei.org/DeltaHEStudy
(8.53 MB) .

Historical Ecology of Alameda Creek: Niles Cone to Tidal Marsh. Hayward, CA; 2011.
(20.32 MB) .

Bioretention Monitoring at the Daly City Library (Case Study Technical Report). Oakland, CA: San Francisco Estuary Institute; 2011 .
(14.26 MB) .

East Contra Costa Historical Ecology Study [Internet]. Oakland: SFEI; 2011 . Report No.: 648. http://www.sfei.org/HEEastContraCosta
(17.71 MB)
(123.69 MB)
(149.82 MB)
(193.36 MB) .




Historical Ecology of the lower Santa Clara River, Ventura River, and Oxnard Plain: an analysis of terrestrial, riverine, and coastal habitats [Internet]. Oakland: SFEI; 2011 . Report No.: 641. http://www.sfei.org/projects/VenturaHE
(17.09 MB)
(201.86 MB) .


Bay Area Aquatic Resources Inventory (BAARI) . 2011 p. 79. Report No.: 746.
(41.31 MB) .

Ecological Monitoring & Assessment Framework: Stream Ecosystem Condition Profile: Coyote Creek Watershed . Oakland, CA: San Francisco Estuary Institute; 2011 p. 109.
(3.83 MB)
(1.88 MB) .


2010
Shifting Baselines in a California Oak Savanna: Nineteenth Century Data to Inform Restoration Scenarios. Restoration Ecology [Internet]. 2010;19(101):88-101. http://onlinelibrary.wiley.com/doi/10.1111/j.1526-100X.2009.00633.x/full .
Water Quality in South San Francisco Bay, California: Current Condition and Potential Issues for the South Bay Salt Pond Restoration Project. Reviews of Environmental Contamination and Toxicology [Internet]. 2010;206:115-147. http://www.springerlink.com/content/v710304548244k08/
(880.04 KB) .

Historical Ecology of the Delta: Habitat characteristics of a fluvial-tidal landscape [Internet]. Sacramento, CA; 2010. http://www.sfei.org/DeltaHEStudy
(1.46 MB) .

Historical Delta Landscapes: Conceptual models for building a diverse and resilient future [Internet]. Sacramento, CA; 2010. http://www.sfei.org/DeltaHEStudy
(5.17 MB) .

The Historical Ecology of Alameda Creek: recent findings. Castro Valley; 2010.
(16.52 MB) .

The Historical Yolo Basin Landscape: What parts make the whole? [Internet]. Sacramento, CA; 2010. http://www.sfei.org/DeltaHEStudy
(4.92 MB) .

Comparison of Agricultural Runoff from Conventional and Organic Orchards. San Francisco, Ca; 2010. .
Historical Vegetation and Drainage Patterns of Western Santa Clara Valley: A technical memorandum describing landscape ecology in Lower Peninsula, West Valley, and Guadalupe Watershed Management Areas [Internet]. Oakland: SFEI; 2010 . Report No.: 622. http://www.sfei.org/scvheproject
(43.77 MB)
(1.29 MB) .


2009
Mercury Concentrations and Loads in a Large River System Tributary to San Francisco Bay, California, USA. Environmental Toxicology and Chemistry. 2009;.
(725.12 KB) .

The Historical Ecology of Eastern Contra Costa County: Preliminary Findings. Contra Costa, Martinez, John Muir House; 2009. .
Historical Wetlands of the South Coast: Landscape Patterns at the Regional and Local Scale. Long Beach, Ca; 2009. .
Bay Area Base Map of Aquatic Habitats. Oakland,Ca; 2009.
(84.32 MB) .

California’s Statewide Survey Of Tidal Wetland Condition. Oakland,Ca; 2009.
(1.49 MB) .

Bay Area Base Map. 2009.
(1.27 MB)

Re-Oaking the Valleys: Bringing Native Trees Back into California’s Suburban Landscapes. Oakland, Ca; 2009.
(2.7 MB) .

Green Infill for Clean Stormwater (Poster). Oakland, Ca; 2009.
(12.67 MB) .

Summary Report: Green Sturgeon, Longfin Smelt, and Dredging Operations in the San Francisco Estuary. Oakland, Ca: San Francisco Estuary Institute; 2009 . Report No.: 598.
(4.1 MB) .

Historical Ecology of Lower San Francisquito Creek Phase 1. Oakland, Ca: San Francisco Estuary Institute; 2009 .
(3.99 MB) .

Concentrations and Loads of Trace Contaminants in the Zone 4 Line A Small Tributary, Hayward, California: Water Year 2007. Oakland,Ca: San Francisco Estuary Institute; 2009 . Report No.: 563.
(6.77 MB) .

Historical Ecology Reconnaissance for the Lower Salinas River [Internet]. Richmond: San Francisco Estuary Institute; 2009 p. 32. Report No.: 581. http://www.sfei.org/projects/lower-salinas-river-historical-ecology-reconnaissance
(44 MB) .

Going Organic Project. Oakland, Ca: San Francisco Estuary Institute; 2009 . Report No.: 588.
(3.09 MB) .

Watershed Specific and Regional Scale Suspended Sediment Load Estimates for Bay Area Small Tributaries. Oakland, Ca; 2009 . Report No.: 566.
(983.2 KB) .

The Historical Ecology of Alameda Creek: Introductory Brochure. 2009 .
(2.88 MB) .

Sustainable Cotton Project. Oakland, Ca: San Francisco Estuary Institute; 2009 . Report No.: 592.
(950.03 KB) .

WRMP Factsheet — Wetland and Riparian Base Map. Oakland, Ca: San Francisco Estuary Institute; 2009 .
(1.25 MB) .

Dry Creek Watershed Sediment Source Reconnaissance Technical Memorandum. Oakland,Ca: San Francisco Estuary Institute; 2009 . Report No.: 595.
(3.06 MB)
(27.1 MB) .


2008
California Rapid Assessment Method (CRAM) Fact Sheet, Level 2, State version. 2008. p. 2 pages.
(390.99 KB) .

Alameda Creek Sediment Forum [Internet]. 2008. alamedacreek .
Napa Watershed Symposium. 2008. .
Pre-Modification Habitat Mosaics of the Delta: Looking to the Past to Envision the Future. Sacramento, CA; 2008.
(6.44 MB) .

California Rapid Assessment Method (CRAM) Fact Sheet, Level 2, State version. Oakland, Ca: San Francisco Estuary Institute; 2008. p. 2 pages.
(390.99 KB) .

CMARP Phase III Technical Support: Highlighting Monitoring Activities and Recommendations for Addressing Shortfalls and Improving Monitoring Coordination in the Delta-Suisun Bay Planning Area. Department of Fish and Game, Central Valley Bay-Delta Branch, Ecosystem Restoration Program; 2008 . Report No.: 565. .
Spatiotemporal variation of turbidity in Alameda Creek and selected tributaries: August thru December 2007. San Francisco Estuary Institute; 2008 . Report No.: 547. .
An Introduction to the Historical Ecology of the Watsonville Sloughs: a Tool for the Critical Coastal Area Action Plan. San Francisco Estuary Institute; 2008 .
(1.32 MB)
(16.53 MB) .


An Introduction to the Historical Ecology of the Sonoma Creek Watershed: a Tool for the Critical Coastal Area Action Plan. San Francisco Estuary Institute; 2008 .
(20.83 MB) .

Wetland Tracker Factsheet, Bay Area, Level 1: Landscpae Assessment. SFEI; 2008 p. 2, front and back. Report No.: 568.
(330.46 KB) .

The Historical Ecology of Napa Valley: An Introduction. 2008 . Report No.: 557.
(33.68 MB)
(5.01 MB) .


Review of sediment gauging studies in Alameda Creek Watershed. San Francisco Estuary Institute; 2008 . Report No.: 571. .
South Santa Clara Valley Historical Ecology Study, including Soap Lake, the Upper Pajaro River, and Llagas, Uvas-Carnadero, and Pacheco Creeks [Internet]. 2008 . http://www.sfei.org/SouthStaClaraValleyHEStudy
(26.39 MB)
(6.81 MB)
(14.42 MB)
(20.34 MB)
(51.26 MB)
(42.1 MB)
(33.12 MB)
(63.69 MB) .








The Historical Ecology of Miller Creek [Internet]. County of MarinThe Watershed ProjectSan Francisco Estuary InstituteNorth Bay Watershed Association; 2008. http://www.nbwatershed.org/millercreek/ .
2007
Historical landscape ecology of an urbanized California valley: wetlands and woodlands in the Santa Clara Valley. Landscape Ecology. 2007;:103-120.
(609.88 KB) .

The Quarternary geography and biogeography of tidal saltmarshes. Bioscience. 2007;56:675-685. .
Native American Management and the Legacy of Working Landscapes in California. Rangelands. 2007;. .
Comparison of Agricultural Run-off between Biological Farming and Conventional Chemical Farming. Pacific Grove; 2007.
(1.98 MB) .

Aligning Socio-Economic and Ecological Condition Valuation. 2007.
(2.34 MB) .

Streams, Wetlands, and Woodlands in the Napa Valley: New Perspectives from Old Maps. Oakland, CA; 2007.
(2.7 MB) .

Appendix 1: All Deliverables Submitted for the Critical Coastal Areas Program, Phase I [Internet]. San Francisco Estuary Institute; 2007 . node/1188
(14.83 MB) .

Stream Inventory Report for La Honda Creek: Prepared for the Midpeninsula Regional Open Space District. San Francisco Estuary Institute; 2007 . Report No.: 529.
(29.72 MB) .

The Historical Ecology of Contra Costa County: An Illustrated Preview and Guide. 2007 .
(8.81 MB) .

East Contra Costa County Historical Ecology Study: Introductory Brochure. 2007 .
(8.81 MB) .

Project Assessment and Evaluation. 2007 . .
Critical Coastal Areas Program, Phase I Final Report [Internet]. San Francisco Estuary Institute; 2007 . Report No.: 541. node/1188
(10.77 MB) .

CRAM Evaluation of Wetland Conditions. Elk Grove, California; 2007 p. 15. Report No.: 544.
(5.29 MB) .

Historical Ecology and Landscape Change of the San Gabriel River and Floodplain. 2007 .
(16.49 MB) .

Ecological Connections between Baylands and Uplands: Examples from Marin County. 2007 . Report No.: 521.
(34.69 MB) .

Ecology, Assemblage Structure, Distribution, and Status of Fishes in Streams Tributary to the San Francisco Estuary, California [Internet]. San Francisco Estuary Institute and the EPA; 2007 p. 194. Report No.: 530. http://www.sfei.org/leidy_No530/index.html
(1.4 MB)
(12.83 MB)
(20.17 MB) .



2006
Evaluation of water hyacinth survival and growth in the Sacramento Delta, California following cutting. J. of Aquatic Plant Management. 2006;.
(781.42 KB) .

Comparison of Methods to Map California Riparian Areas. 2006;.
(13.1 MB) .

Trophic adaptations in sparrows and other vertebrates of tidal marshes. Studies in Avian Biology. 2006;. .
Creek and Watershed Map of Richmond and Vicinity [Internet]. Oakland, CA; 2006. http://museumca.org/product/creek-watershed-map-richmond-vicinity .
Review of methods to reduce urban stormwater loads. Oakland: San Francisco Estuary Institute; 2006 p. 150xx. Report No.: 429.
(6.43 MB) .

Coyote Creek Watershed Historical Ecology Study: Historical Conditions and Landscape Change in the Eastern Santa Clara Valley, California [Internet]. San Francisco Estuary Institute; 2006 . Report No.: 426. coyotecreek
(188.33 MB)
(27.61 MB)
(27.49 MB) .



Concentrations and Loads of Mercury, PCBs and PBDEs in the Lower Guadalupe River, San Jose, California: Water Years 2003, 2004, and 2005. Oakland: San Francisco Estuary Institute; 2006 . Report No.: 424.
(11.98 MB) .

Pinole Creek Sediment Source Assessment: Pavon Creeks Sub-basin. San Francisco Estuary Institute; 2006 p. 67. Report No.: 515.
(51.71 MB)
(25.63 MB) .


Second Annual Report Montezuma Wetlands Restoration Project Technical Review Team. 2006 . Report No.: 516.
(57.39 MB) .

U.S. Coast Survey Maps of SFBay [Internet]. San Francisco Estuary Institute, prepared for Santa Clara Valley Urban Runoff Pollution Prevential Program; 2006. http://maps.sfei.org/tSheets/viewer.htm .
2005
Documenting Local Landscape Change: The Bay Area Historical Ecology Project. In The HISTORICAL ECOLOGY HANDBOOK: A Restorationist's Guide to Reference Ecosystems [Internet]. Island Press; 2005. http://www.islandpress.org/books/detail.html/SKU/1-59726-033-9 .
A practical guide for the development of a wetland rapid assessment method: the California experience. J. of the American Water Resources Association. 2005;. .
Pinole Creek Watershed Sediment Source Assessment. A technical report of the Regional Watershed Program, San Francisco Estuary Institute (SFEI), Oakland, California. (plotter-sized landslide map only). Oakland, CA: San Francisco Estuary Institute; 2005.
(19.55 MB) .

Characterization of mercury concentrations in suspended sediment loads in Guadalupe River and Coyote Creek, San Jose, California: Can TMDL targets be met?. Henry J. Kaiser Convention Center, Oakland California; 2005.
(3.27 MB) .

South Bay Salt Pond Restoration Project Interactive Map. Henry J. Kaiser Convention Center, Oakland California; 2005.
(3.64 MB) .

Baylands and Creeks of South San Francisco Bay. Henry J. Kaiser Convention Center, Oakland CA; 2005.
(8.17 MB) .

An Integrated Wetlands Assessment Program for the San Francisco Bay Area and California. Henry J. Kaiser Convention Center; 2005.
(4.6 MB) .

Pinole Creek Watershed Sediment Source Assessment: A sediment budget approach highlighting watershed-scale sediment-related processes and supply to the Bay [Internet]. Henry J. Kaiser Convention Center, Oakland, CA; 2005. http://www.sfei.org/presentations_posters/SOE_05/index_poster.html
(2.02 MB) .

The Wetland Project Tracker. Henry J. Kaiser Convention Center, Oakland California; 2005.
(3.45 MB) .

Pinole Creek Watershed Sediment Source Assessment. A technical report of the Regional Watershed Program, San Francisco Estuary Institute (SFEI), Oakland, California. (appendix only). Oakland, CA: San Francisco Estuary Institute; 2005 . Report No.: 316.
(1.29 MB) .

Historical Landscape Analysis (full title to come from Robin). San Francisco Estuary Institute; 2005 . Report No.: 396.
Shellmounds report (full title to come from Robin). San Francisco Estuary Institute; 2005 . Report No.: 395.
T-Sheet User Guide: Application of the Historical U.S. Coast Survey Maps to Environmental Management in the San Francisco Bay Area. SF: San Francisco Estuary Institute; 2005 p. 45. Report No.: 427.
(8.6 MB) .

Pinole Creek Watershed Sediment Source Assessment. A technical report of the Regional Watershed Program, San Francisco Estuary Institute (SFEI), Oakland, California. (report only -- no appendix). Oakland, CA: San Francisco Estuary Institute; 2005 . Report No.: 316.
(4.28 MB) .

Human influences on nitrogen and phosphorus concentrations in creek and river waters of the Napa and Sonoma watersheds, northern San Francisco Bay, California. Oakland: San Francisco Estuary Institute; 2005 . Report No.: 421.
(1.72 MB) .

Concentrations and loads of mercury, PCBs, and OC pesticides in the lower Guadalupe River, San Jose,California: Water Years 2003 and 2004. San Francisco Estuary Institute; 2005 p. 80. Report No.: 409.
(1.61 MB) .

A Watershed Monitoring Strategy for Napa County. Napa,: San Francisco Estuary Institute; 2005 p. 34. Report No.: 428.
(1.14 MB) .

State of the Estuary 2005 Conference Abstract. 2005 .
(76.3 KB) .

Interpreting Historical Maps to Reconstruct Past Landscapes in the Santa Clara Valley. 2005 .
(32.97 MB)
(32.97 MB) .


Trends in Suspended Sediment Input to the San Francisco Bay for Local Tributaries Watersheds. San Francisco Estuary Institute; 2005 .
(7.9 MB) .

2004
Summary of the MeHg Panels of the 2004 CalFed Science Conference. Prepared with the advice and review of the Panelists. CalFed Science Conference, 2004. Sacramento; 2004. p. 2.
(55.25 KB) .

Relative effects of fluvial processes and historical land use on channel morphology in three sub-basins, Napa River basin, California, USA. IAHS, International Association of Hydrological Sciences. 2004;288.
(117.55 KB) .

Ecological, Geomorphic, and Land Use History of Sulphur Creek Watershed: A component of the watershed management plan for the Sulphur Creek watershed, Napa County, California. Oakland: San Francisco Estuary Institute; 2004 . Report No.: 307.
(12.87 MB) .

The concentration and load of PCBs, OC pesticides, and mercury associated with suspended sediments in the lower Guadalupe River, San Jose, California. A Technical Report of the Regional Watershed Program. Oakland, CA: San Francisco Estuary Institute; 2004 . Report No.: 86.
(1.66 MB) .

San Pedro Creek Watershed Sediment Source Analysis, Volume III: Tributary sediment source assessment. Oakland, CA: San Francisco Estuary Institute; 2004 . Report No.: 87.
(16.74 MB) .

Wetland Habitat Changes in the Rodeo Lagoon Watershed, Golden Gate National Recreation Area, Marin County, CA. Oakland, CA: San Francisco Estuary Institute; 2004 . Report No.: 116.
(13.65 MB) .

Analysis of Reference Tidal Channel Plan Form for the Montezuma Wetlands Restoration Project. Oakland, CA: San Francisco Estuary Institute; 2004 . Report No.: 80.
(5.96 MB) .

First Annual Report of the Montezuma Wetlands Restoration Project Technical Review Team. Oakland, CA: San Francisco Estuary Institute; 2004 . Report No.: 102.
(4.56 MB) .

Baylands Vegetation Mapping Protocol (Version 1.0). Oakland, CA: San Francisco Estuary Institute; 2004 . Report No.: 304.
(450.49 KB) .

Ecological, Geomorphic, and Land Use History of Carneros Creek Watershed: A component of the watershed management plan for the Carneros Creek watershed, Napa County, California. Oakland: San Francisco Estuary Institute; 2004 . Report No.: 70.
(1.15 MB) .

Fluvial Geomorphology, Hydrology, and Riparian Habitat of La Honda Creek Along the Hwy 84 Transportation Corridor, San Mateo County, California. San Francisco Estuary Institute /CA State Univ of Fresno; 2004 . Report No.: 78.
(4.27 MB)
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(156.77 KB)
(5.18 MB)
(9.62 MB)
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(218.87 KB)
(3.38 MB)
(88.2 KB)
(71.37 KB)
(19.65 MB)
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(159.61 KB) .














Once and Future Bay: Lessons from History for Revitalizing the Bay. 2004.
(6.28 MB) .

2003
Regional Wetlands Monitoring in San Francisco Bay (Transcript). In 2003.
(5.93 KB) .

Bay Area Wetlands Ecosystem Goals Project: Bay Area Wetland Project Map. San Francisco Estuary Institute; 2003.
(5.93 KB) .

Coyote Hills Area Habitat Conceptual Planning for 2002-03. San Francisco Estuary Institute; 2003.
(5.85 KB) .

Universal Wetland Ecological Features (Graphic). San Francisco Estuary Institute; 2003.
(6.96 KB) .

Ambient Survey of Intertidal Ecological Health and Stressors. 2003.
(1.22 MB) .

CRAM: Synopsis of first CRAM Core Team meeting. San Francisco Estuary Institute; 2003. p. 4.
(13.6 KB) .

California Rapid Assessment Method (CRAM) - Part 1. San Francisco Estuary Institute; 2003.
(18.12 MB) .

Regional Watershed Program. Oakland, CA: San Francisco Estuary Institute; 2003.
(137.72 KB) .

Sediment and Contaminant Loading from the Guadalupe River: Implications for TMDLs and Mass Budget Models (presented at NorCal SETAC 2003 Conference). The NorCal SETAC 2003 Conference; 2003.
(6.21 MB) .

Geomorphic Processes and Salmonid Habitat in Sulphur and Carneros Creeks, Napa River Watershed, Napa County California (PowerPoint presentation). San Francisco Estuary Institute; 2003.
(3.17 MB) .

Landscape Change in the Napa River Watershed, 1800 - 2002: Implications for the Restoration of In - Stream, Floodplain, and Valley Floor Habitat. The Watershed Sciences CALFED Science Conference, January 16, 2003: San Francisco Estuary Institute; 2003.
(10.13 MB) .

DRAFT California Rapid Assessment Method for Wetlands v. 2.0 : User's Manual and Scoring Forms. Oakland, CA: San Francisco Estuary Institute; 2003. p. 102. .
South and Central Bay Wetlands Projects. 2003.
(25.49 KB) .

Coyote Hills Wetland Enhancement and Drainage Improvement (Project Summary Outline) [Internet]. San Francisco Estuary Institute, Phillip Williams & Associates; 2003. http://www.sfei.org/wetlands/Current%20Projects/Coyote%20Hils%20Park%20Habitat%20Co%7E000/2%20Project%20Summary%20for%20B%7E000.pdf
(22.25 KB) .

Sustaining Regional Partnerships for Conservation: Sharing the Future. 2003.
(2.15 MB) .

Regional Wetlands Monitoring in San Francisco Bay (Abstract). 2003 .
(5.93 KB) .

Channel Geomorphology Assessment: A component of the watershed management plan for the Sulphur Creek watershed, Napa County, California. Oakland, CA: San Francisco Estuary Institute; 2003 . Report No.: 68.
(4.64 MB) .

DRAFT California Rapid Assessment (CRAM) Verification Approach. Oakland, CA: San Francisco Estuary Institute; 2003 p. p. 9. Report No.: 283. .
California Rapid Assessment Method (CRAM) - Part 2. San Francisco Estuary Institute; 2003 . Report No.: 285.
(2.79 MB) .

Draft Guidelines for Developing the CRAM Metrics. Oakland, CA: San Francisco Estuary Institute; 2003 p. 2. Report No.: 284.
(4.88 KB) .

A Geographic History of the San Lorenzo Creek Watershed: Landscape Patterns Underlying Human Activities (w / 8.5x11 or 11 x 17 map) [Internet]. Oakland, CA: San Francisco Estuary Institute; 2003 . Report No.: 85. http://www.sfei.org/HEP/reports/SLor_geog_hist_final_w_11x17_map_2.pdfhttp://www.sfei.org/HEP/reports/SLor_geog_hist_final_w_8x11map_2.pdf
(8.84 MB)
(9.57 MB) .


South Bay Updates Modern Baylands Habitat Coverage Bay Area EcoAtlas Information System. Oakland, CA: San Francisco Estuary Institute; 2003 . Report No.: 282. .
Channel Geomorphology Assessment: A component of the watershed management plan for the Carneros Creek watershed, Napa County, California. Oakland, CA: San Francisco Estuary Institute; 2003 . Report No.: 67.
(4.87 MB) .

2002
Freshwater inflow: Science, Policy, and Managment. Estuaries. 2002;25:1243-1245. .
Shell damage and salt marsh periwinkles (Littoraria irrorata Say) and resistance to future attacks by blue crabs (Callinectes sapidus Rathbun). American Malacological Bulletin. 2002;17:141-146.
(423.12 KB) .

Statement of Need (Wetlands Science Program). 2002. p. 1. .
Program Development for the Wetlands Science Program. 2002. p. 1.
(10.39 KB) .

Tidal Marsh Vegetation. 2002.
(72.85 KB) .

The National Hydrography Data Set: San Francisco Bay Area. San Francisco Estuary Institute; 2002.
(9.47 MB) .

Water quality modeling: Characterization of nutrients in surface waters and modeling at the watershed scale. University of California at Berkeley: San Francisco Estuary Institute; 2002.
(2.94 MB) .

Estimating sediment related contaminant loads entering San Francisco Bay from the Central Valley: A contribution to Region 2 and Region 5 TMDLs. San Francisco Estuary Institute; 2002.
(996.04 KB) .

Sources, Pathways and Loadings Documents. Oakland, CA: San Francisco Estuary Institute; 2002.
(184.57 KB)
(282.92 KB)
(2.84 MB)
(1.06 MB)
(816.18 KB)
(343.39 KB)
(221.26 KB)
(2.53 MB)
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(598.85 KB) .












Sediment Contaminants. 2002.
(172.72 KB) .

Management Questions for the Wetlands Science Program. San Francisco Estuary Institute; 2002. p. 1.
(9.04 KB) .

Montezuma Wetlands Monitoring Project Technical Review Team (TRT) First Information Package. Oakland, CA: San Francisco Estuary Institute; 2002.
(64.83 KB) .

Major Technical Components of the Wetlands Science Program. San Francisco Estuary Institute; 2002. p. 6.
(24.7 KB) .

Geographic Scope of the Wetlands Science Program. San Francisco Estuary Institute; 2002. p. 1.
(6.38 KB) .

Pacific Estuarine Ecosystem Indicators Research Consortium (PEEIR): Generalized Conceptual Models Wetlands Regional Monitoring Program. San Francisco Estuary Institute; 2002.
(351.13 KB) .

Crissy Field Monitoring Technical Review Team (Project Description) [Internet]. San Francisco Estuary Institute; 2002. http://www.sfei.org/wetlands/Current%20Projects/Crissy%20Field%20Monitoring%20Tec%7E000/1%20Crissy%20Final%20Project%20%7E000.pdf
(8.54 KB) .

River Otter Protocol. 2002.
(58.68 KB) .

Yuma Bat Protocol. 2002.
(36.84 KB) .

Management Structure of the Wetlands Science Program. San Francisco Estuary Institute; 2002. p. 10.
(33.86 KB) .

Montezuma Wetlands Monitoring Project Technical Review Team (TRT) "Kickoff" Meeting Minutes. Oakland, CA: San Francisco Estuary Institute; 2002.
(17.16 KB) .

California and the World Ocean 2002 (Abstract for Session on California Coastal Wetlands Issues). Oakland, CA: San Francisco Estuary Institute; 2002.
(8 KB) .

Program Origins of the Wetlands Science Program. 2002. p. 1. .
Sediment Transport From The Sacramento/San Joaquin Delta During Large Resuspension Events: Implications For Pollutant Transport To San Francisco Bay. San Francisco Estuary Institute; 2002. .
Red-Legged Frog Protocol. 2002.
(399.23 KB) .

Sediment Protocols. 2002.
(94.08 KB) .

Sonoma Valley Historical Ecology Project, Phase 1 Final Report. Sonoma County Water Agency and the SF Estuary Project.; 2002 p. 8 pp. plus apps. Report No.: 254.
(31.29 KB) .

California Rapid Assessment Method for Wetlands v. 1.0. San Francisco Estuary Institute; 2002 p. 18. Report No.: 246. .
Data Collection Protocol Montioring River Otter (Lutra [=Lontra] canadensis). Oakland, CAStanislaus, CA: CA State University Stanislaus, U.S Forest Service, San Francisco Bay Regional Water Quality Control Board; 2002 p. 11. Report No.: 241. .
Data Collection Protocol Tidal Wetland Vegetation. San Francisco, CA: San Francisco State; 2002 p. 13. Report No.: 279. .
Data Collection Protocol Distribution, Abundance, and Treatment of Non-indigenous Speicies of Cordgrass in the San Francisco Estuary. Oakland, CA: San Francisco Estuary Institute; 2002 p. 44. Report No.: 247.
(1.18 MB) .

Data Collection Protocols Surveying for the Salt Marsh Harvest Mouse [Reithrodontomys raviventris}, California Vole (Microtus califoricus) and other Small Mammals. Fremont, Ca San Jose, Ca: Rana Resources, San Jose State University; 2002 p. 14. Report No.: 275. .
Data Collection Protocol Survey Protocol for the California Red-Legged Frog (Rana aurora draytonii). Fremont, CA: Rana Resources; 2002 p. 15. Report No.: 347. .
Data Collection Protocol Sedimentation- Erosion Tables (SET's). San Francisco, CASan Rafael, CA: University of San Francisco, Wetlands and Water Resources; 2002 . Report No.: 244. .
The Historical Geography and Biogeography of Tidal Salt Marshes (Abstract). San Francisco Estuary Institute; 2002 .
(5.66 KB) .

Measurement of sediment and contaminant loads from the Guadalupe River watershed: sampling and analysis plan. Oakland, CA: San Francisco Estuary Institute; 2002 . Report No.: 64.
(657.31 KB) .

Results of the Estuary Interface Pilot Study, 1996-1999, Final Report. (Technical Report of the Sources Pathways and Loading Work Group (SPLWG) of the San Francisco Estuary Regional Monitoring Program for Trace Substances (RMP)). Oakland, CA: San Francisco Estuary Institute; 2002 . Report No.: 50.
(1.66 MB) .

San Francisco Estuary Wetlands Regional Monitoring Program Plan: Protocols for Tier 3 (Intensive Monitoring). 2002 . Report No.: 249. .
Report of Science Advisors: Solano County Natural Community Conservation Plan Habitat Conservation Plan. 2002 . Report No.: 272.
(585.78 KB) .

Pathogen Occurrence and Analysis in Relation to Water Quality Attainment in San Francisco Bay Area Watersheds. 2002 . Report No.: 128.
(133.07 KB) .

Executive Summary: SFEI Component of the Integrated Regional Wetlands Monitoring Pilot Project. San Francisco Estuary Institute; 2002 p. 2. Report No.: 251.
(75.19 KB) .

Mapping Urbanized and Rural Drainages in the Bay Area: A Tool for Improved Management of Stormwater Contaminants Derived from Small Tributaries. Oakland, CA: San Francisco Estuary Institute; 2002 . Report No.: 133.
(2.1 MB) .

Executive Summary 2002 (Wetlands Science Program). San Francisco Estuary Institute; 2002 p. 4. Report No.: 250.
(27.74 KB) .

Monitoring the US West Coast: An Assessment of California’s Estuaries and the Pacific Ocean:Spatial Hierarchy and its Rationale. Oakland, CA: San Francisco Estuary Institute; 2002 . Report No.: 120.
(119.38 KB) .

San Francisco Estuary Wetalnds Regional Monitoring Program Plan: Version 1, Framework and Protocols. Oakland, CA: San Francisco Estuary Institute; 2002 p. 94. Report No.: 248.
(1.11 MB) .

Data Collection Protocol Yuma Bat (Myotis yumanensis). San Jose, CA: H.T Harvey & Associates; 2002 p. 7. Report No.: 259. .
Summary of Crissy Field Monitoring Elements [Internet]. San Francisco Estuary Institute; 2002 . http://www.sfei.org/wetlands/Current%20Projects/Crissy%20Field%20Monitoring%20Tec%7E000/2%20Summary%20of%20Crissy%20Fie%7E000.pdf
(9.75 KB) .

Estimation of Total Mercury Fluxes Entering San Francisco Bay from the Sacramento and San Joaquin River Watersheds (Technical Memo). Oakland, CA: San Francisco Estuary Institute; 2002 . Report No.: 260.
(1007.25 KB) .

Napa River Sediment TMDL Baseline Study: Geomorphic Processes and Habitat form and function in Soda Creek. Oakland, CA: San Francisco Estuary Institute; 2002 . Report No.: 63.
(4.2 MB) .

Mission Statement for the Wetlands Science Program. 2002. p. 1.
(4.31 KB) .

2001
Documenting Local Landscape Change: The Bay Area Historical Ecology Project. In: . The Historical Ecology Handbook: A Restorationist's Guide to Reference Ecosystems. Washington D.C.: Island Press; 2001. .
Building a regionally consistent base map for the Bay Area: The National Hydrography Data Set. Abstracts of the 5th Biannual State of the Estuary Conference – San Francisco Estuary: Achievements, trends and the future. Palace of the Fine Arts theatre, October 9, 10, and 11, 2001; 2001. p. pp 108. .
Contaminant contributions from the Guadalupe River and Coyote Creek watersheds to the lower South San Francisco Bay. Abstracts of the 5th Biannual State of the Estuary Conference – San Francisco Estuary: Achievements, trends and the future. Palace of the Fine Arts theatre, October 9, 10, and 11, 2001.; 2001. .
Influence of climate, geology, and humans on spatial and temporal variability in nutrient geochemistry in the sub-tropical Richmond River catchment, Australia. Marine and Freshwater Research. 2001;52:235-248. .
Coyote Hills Historic Baylands. 2001.
(3.44 MB) .

Sediment Loads Transported from The Delta During Large Resuspension Events. San Francisco Estuary Institute; 2001. .
Program Strategy for the Wetlands Science Program. 2001.
(25.54 KB) .

Pacific Estuarine Ecosystem Indicators Research Consortium (PEEIR): PEEIR Project Description. San Francisco Estuary Institue; 2001.
(5.71 KB) .

The Challenges in Designing an Effective Regional Watershed Sampling Program. San Francisco Estuary Institute; 2001.
(1.56 MB) .

Wetlands Work at SFEI. 2001.
(2.91 MB) .

Wetlands Regional Monitoring Program Prospectus. 2001. p. 9. .
Introduction to Wetland Monitoring Protocols. 2001.
(13.03 KB) .

Montezuma Wetlands Monitoring Project Technical Review Team (TRT) Charter. Oakland, CA: San Francisco Estuary Institute; 2001.
(24.56 KB) .

Resurvey. Bay Nature; 2001.
(857.15 KB) .

Determining Loads and Trends in Small Tributaries. San Francisco Estuary Institute; 2001.
(77.09 KB) .

In Search of a Lost Laguna. Bay Nature; 2001.
(938.36 KB) .

Estuarine Wetlands Restoration in the San Francisco Bay Area: the Roles of Not-for-Profits (Transcript). San Francisco Estuary Institute; 2001. p. 8.
(31.07 KB) .

Historic Drainage Patterns of the Alameda Watershed (Transcript). San Francisco Estuary Institute; 2001.
(821.71 KB) .

SFEI Wetlands Program Strategy. Oakland, CA: San Francisco Estuary Institute; 2001. p. 6. .
Sand. Bay Nature; 2001. .
Mosquito Landscapes - Part 2 (Transcript). San Francisco Estuary Institute; 2001.
(8.69 KB) .

Possible Geomorphic Effects of Invasive Spartina alterniflora in the San Francisco Estuary. San Francisco Estuary Institute; 2001.
(5.61 MB) .

An Overview of the Expected Physical Relationships between the Intertidal and Shallow Bay Zones of the San Francisco Estuary (Transcript). Richmond, CA: San Francisco Estuary Institute; 2001.
(695.63 KB) .

Monitoring the US West Coast: An Assessment of California’s Estuaries and the Pacific Ocean: Year 2002 Wetlands Assessment. Oakland, CA: San Francisco Estuary Institute; 2001.
(548.57 KB) .

Land Use Timeline for Crow Canyon and the San Lorenzo Creek Watershed. Alameda Countywide Clean Water Program; 2001 p. 6 pp. Report No.: 352.
(21.63 KB) .

Restoration of the San Francisco Region: the Role of NGOs (Abstract). Richmond, CA: San Francisco, CA; 2001 .
(4.94 KB) .

Wildcat Creek Watershed: A Scientific Study of Physical Processes and Land Use Effects [Internet]. Richmond, CA: San Francisco Estuary Institute; 2001 . Report No.: 363. http://www.sfei.org/wildcatcreeklandscapehistory
(31.51 MB)
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QAPP for environmental monitoring and assessment program West Coast Pilot 2002 Intertidal Assessment: California Intensification. Oakland, CA: San Francisco Estuary Institute; 2001 . Report No.: 234.
(489.07 KB) .

Sediment loads transported from the Delta: Implications for management of pollutants of concern. San Francisco Estuary Institute; 2001 . Report No.: 231.
(1.3 MB) .

Wetlands Regional Monitoring Program. Draft Data Collection Protocols. 2001 . Report No.: 365. .
Ohio Rapid Assessment Method for Wetlands v. 5.0 Users Manual and Scoring Forms. Ohio: State of Ohio Environmental Protection Agency; 2001 p. 107. .
Bay Area Wetlands Regional Monitoring Program (Abstract, SOE 2001). Richmond, CA: San Francisco Estuary Institute; 2001 .
(6.46 KB) .

Will Knowing Tidal Elevation Help Explain Variations in Sediment Chemistry and Microbial Processes Among Sample Plots in Tidal Marshes?. San Francisco Estuary Institute; 2001 p. 6. Report No.: 290.
(47.14 KB) .

Basic Regional Spatial Analysis of Non - Indigenous Invasive Species (NIS) Spartina Invasions in the San Francisco Estuary. Richmond, Ca: San Francisco Estuary Institute; 2001 . Report No.: 372.
(429.92 KB) .

Resurrection (Article in New Scientist). 2001.
(314.5 KB) .

2000
Mercury and tidal wetland restoration. In Chapter 6 in Brown, L. (ed.). DRAFT CALFED Whitepaper on: Ecological Processes in Tidal Wetlands of the Sacramento-San Joaquin Estuary and Their Implications for Proposed Restoration Efforts of the Ecosystem Restoration Program. 2000. .
A framework for comprehensive, integrated, watershed monitoring in New York City. Environmental Monitoring and Assessment. 2000;62:147-167. .
Intra - and inter-annual export of nitrogen and phosphorus in the sub-tropical Richmond River catchment, Australia. Hydrological Processes. 2000;14:1787-1809. .
Transport and retention of nitrogen and phosphorus in the sub-tropical Richmond River estuary, Australia - a budget approach. Biogeochemistry. 2000;50:241-278. .
The Transport of contaminants to San Francisco Bay by stormwater. 2000 pp. 5-7. Report No.: 344. .
Contaminant Loads from Stormwater to Coastal Waters in the San Francisco Bay Region: Comparison to Other Pathways and Recommended Approach for Future Evaluation. Richmond, CA: San Francisco Estuary Institute; 2000 . Report No.: 342.
(4.87 MB)
(2.58 MB) .


The Estuary Interface Pilot Study: 1998 Progress Report. San Francisco Estuary Institute; 2000 . Report No.: 49. .
Summary of existing information in the watershed of Sonoma Valley in relation to the Sonoma Creek Watershed Restoration Study and recommendations on how to proceed. San Francisco Estuary Institute; 2000 . Report No.: 345. .
The Way It Was: Mythology, Memory, and Maps of the Early San Francisco Bay Area (Abstract for American Society for Environmental History Conference, March 2000). San Francisco Estuary Institute; 2000 . Report No.: 269.
(8.69 KB) .

1999
What did this place used to look like, anyway? An Example of Historical Ecology Research from the San Francisco Bay Area, CA (Abstract for Society for Ecological Restoration Conference 1999). San Francisco Estuary Institute; 1999.
(7.58 KB) .

Seeing Time: A Historical Approach to Restoration. Ecological Restoration. 1999;17:251-2. .
The Environment of the East Bay Shoreline When Europeans First Arrived (Transcript). a Conference held a Mountain Light Studio, Emeryville, 25 July 1999: San Francisco Estuary Institute; 1999.
(14.19 KB) .

Effects of the Goals Project (Transcript). San Francisco Estuary Institute; 1999.
(17.13 KB) .

Mosquito Landscapes - Part 1 (Transcript). Richmond, CA: San Francisco Estuary Institute; 1999.
(14.58 KB) .

Evolution and Natural Maintenance of Tidal Marshes in San Pablo Bay (Transcript). San Francisco Estuary Institute; 1999.
(5.14 KB) .

Conceptual models of freshwater influences on tidal marsh form and function, with an historical perspective. City of San Jose, CA: Department of Environmental Services; 1999 p. 237 pp. Report No.: 327. .
Robert A. Leidy Fish Survey 1992-1998 Bay Area Stream Fishes. 1999 .
(1.37 MB) .

Baylands Ecosystem Habitat Goals Report. 1999 .
(7.11 MB) .

Baylands Ecosystem Habitat Goals. U. S. Environmental Protection Agency, San Francisco, Calif./S.F. Bay Regional Water Quality Control Board, Oakland, Calif.; 1999 p. 328. Report No.: 330.
(7.11 MB) .

1998
Bay Area Watersheds Science Approach. San Francisco Estuary Institute; 1998.
(330.72 KB) .

The Baylands: Past, Present, and Change (Abstract). San Francisco Estuary Institute; 1998.
(6.46 KB) .

Comments on the Intersection of Land, Water, and People (Transcript). San Francisco Estuary Institute; 1998.
(5.69 KB) .

A Bay Area Watersheds Science Approach (Abstract). San Francisco Estuary Institute; 1998.
(4.4 KB) .

Uncertainty in Biodiversity Planning: Lessons from the Bay Area (Transcript). San Francisco Estuary Institute; 1998.
(21.2 KB) .

Mosquito Landscapes (Abstract). Richmond, CA: San Francisco Estuary Institute; 1998.
(4.48 KB) .

The Watershed and the Baylands (Transcript). San Francisco Estuary Institute; 1998.
(15.94 KB) .

EcoAtlas Baylands Maps [Internet]. 1998. ecoatlas .
Spatial Analysis of the Baylands Ecosystem. 1998 p. 120. Report No.: 320. .
Bay Area Wetlands Ecosystem Goals Project: Key Baylands Species. San Francisco Estuary Institute; 1998 . Report No.: 121.
(25.65 KB) .

Cartographic analysis of historical and modern baylands boundaries for Marin County, California. Marin County Community Develpment Agency; 1998 p. 88 pp. Report No.: 229. .
Bay Area Wetlands Ecosystem Goals Project: Draft Functional Correspondence between Past and Present Key Habitats. San Francisco Estuary Institute; 1998 . Report No.: 123.
(23.63 KB) .

Contamination of Tidal Wetlands. Richmond CA; 1998 . Report No.: 228. .
BAYLANDS ECOSYSTEM HABITAT GOALS: REPORT ON THE PROCESS TO SET REGIONAL GOALS FOR WETLANDS RESTORATION IN THE SAN FRANCISCO BAY AREA. Richmond, CA: San Francisco Estuary Institute; 1998 . Report No.: 227.
(3.12 KB) .

Bay Area Wetlands Ecosystem Goals Project: Key Baylands Habitats. San Francisco Estuary Institute; 1998 . Report No.: 122.
(35.49 KB) .

1997
Recovery strategies for the California clapper rail (Rallus longirostris obsoletus) in the heavily urbanized San Francisco estuarine ecosystem. Landscape and Urban Planning. 1997;38:229-243. .
Red tide in Berkeley Marina raises concern for toxic blooms in Central Bay [Internet]. 1997. pp. 11-13. http://www.sfei.org/bioinvasions/Reports/1998RedTide.pdf
(632.84 KB) .

Brief Overview of Historical Suisun Tidal Marsh Form and Ecological Function with Notes on Restoration Science (Transcript). San Francisco Estuary Institute; 1997.
(20.23 KB) .

Watershed Conference (Transcript). San Francisco Estuary Institute; 1997.
(9.82 KB) .

Watershed Management in the Bay Area (Transcript). San Francisco Estuary Institute; 1997.
(20.09 KB) .

1996
Geography of Wetlands in the San Francisco Estuary (Transcript). San Francisco Estuary Institute; 1996.
(20.54 KB) .

What are Data? (Transcript). San Francisco Estuary Institute; 1996. p. 17.
(8.99 KB) .

What is a Tidal Marsh?. San Francisco Estuary Institute; 1996. p. 1.
(8.99 KB) .

Tidal wetland restoration potential using dredged sediments: a methodology for assessment with examples from the North Bay Area. 1996 . Report No.: 305.
(8.27 MB) .

1995
A Very Brief Overview on The Histories of Some Marin County Creeks (Transcript). San Francisco Estuary Institute; 1995.
(15.94 KB) .

Bay Area Wetlands Ecosystem Goals Project: Focus Team Orientation Talking Points. Richmond, CA: San Francisco Estuary Institute; 1995.
(4.43 KB) .

Bay Area Wetlands Ecosystem Goals Project: Starting Considerations. San Francisco Estuary Institute; 1995.
(10.27 KB) .

Bay Area Wetlands Ecosystem Goals Project: Focus Team Orientation Package. Richmond, CA: San Francisco Estuary Institute; 1995.
(60.58 KB) .

Historical Evidence of Freshwater Effects on the Plan Form of Tidal Marshlands in the Golden Gate Estuary. Masters Thesis. [Santa Cruz]: University of California; 1995. p. 130 pp. .
1994
Implementation Manual for the San Leandro Creek Watershed Awareness Program, 1993-1994. Richmond, Ca: San Francisco Estuary Institute; 1994 p. 75. Report No.: 177. .
1987
Natural and artificial wetland ecosystems - ecological opportunities and limitations. In: . Aquatic Plants for Water Treatment and Resource Recovery. Gainesville, FL: University of Florida; 1987. .