Publications for Resilient Landscapes Program

2020

Baumgarten S, Grossinger R, Bazo M, Benjamin M. Re-Oaking North Bay. Richmond, CA: San Francisco Estuary Institute; 2020 . Report No.: 947.  (20.51 MB) (1.83 MB)

2019

Beagle J, Lowe J, McKnight K, Safran SM, Tam L, Szambelan SJo. San Francisco Bay Shoreline Adaptation Atlas: Working with Nature to Plan for Sea Level Rise Using Operational Landscape Units. Richmond, CA: SFEI & SPUR; 2019 p. 255. Report No.: 915.  (259.64 MB) (84.6 MB) (20.93 MB)
Hagerty S, Spotswood E, McKnight K, Grossinger RM. Urban Ecological Planning Guide for Santa Clara Valley. Richmond, CA: San Francisco Estuary Institute; 2019 . Report No.: 941.  (42.6 MB)
Lowe S. West Valley Watershed Assessment 2018: Baseline Ecological Condition Assessment of Southwest San Francisco Bay Creeks in Santa Clara County; Calabazas, San Tomas Aquino, Saratoga, Sunnyvale East and West. Salomon M, Pearce S, Josh Collins, Titus D. Richmond: San Francisco Estuary Institute; 2019 . Report No.: 944.  (5.02 MB)
Spotswood E, Grossinger R, Hagerty S, Bazo M, Benjamin M, Beller E, et al.. Making Nature's City. Richmond, CA: San Francisco Estuary Institute; 2019 . Report No.: 947.  (10.41 MB) (33.4 MB)

2018

Beller EE, Spotswood E, Robinson A, Anderson MG, Higgs ES, Hobbs RJ, et al.. Building Ecological Resilience in Highly Modified Landscapes [Internet]. 2018. https://academic.oup.com/bioscience/advance-article/doi/10.1093/biosci/biy117/5145587?guestAccessKey=44713a57-9261-4e7e-96d9-c77985c8fa93 (4.93 MB)
Safran SM, Hagerty S, Robinson A, Grenier L. Translating Science-Based Restoration Strategies into Spatially-Explicit Restoration Opportunities in the Delta (2018 Bay-Delta Science Conference Presentation). 2018.  (3.78 MB)
Safran SM, Baumgarten SA, Beller EE, Bram DL, Crooks JA, Dark SJ, et al.. The Historical Ecology of the Tijuana Estuary & River Valley (Restore America's Estuaries 2018 Conference Presentation). 2018.  (14.16 MB)
Baumgarten S, Clark E, Dusterhoff S, Grossinger RM, Askevold RA. Petaluma Valley Historical Hydrology and Ecology Study. Richmond, CA: San Francisco Estuary Institute; 2018 . Report No.: 861.  (121.7 MB) (43.68 MB)
McKnight K, Dusterhoff SD, Grossinger RM, Askevold RA. Resilient Landscape Vision for the Calabazas Creek, San Tomas Aquino Creek, and Pond A8 Area: Bayland-Creek Reconnection Opportunities. Richmond, CA: San Francisco Estuary Institute-Aquatic Science Center; 2018 p. 40. Report No.: 870.  (68.63 MB) (20.14 MB)
Beagle J, Richey A, Hagerty S, Salomon M. Observational Study of Sycamore Regeneration at two sites in Santa Clara County after the 2016-2017 Water Year. 2018 . Report No.: 874.  (8.44 MB)
Schoellhamer D, McKee L, Pearce S, Kauhanen P, Salomon M, Dusterhoff S, et al.. Sediment Supply to San Francisco Bay. Richmond, CA: San Francisco Estuary Institute ; 2018 . Report No.: 842.  (1.74 MB)
Robinson A, Richey A, Slotton D, Josh Collins, Davis J. North Bay Mercury Biosentinel Project: 2016 - 2017. 2018 . Report No.: 868.  (1.59 MB)
Richey A, Dusterhoff SD, McKnight K, Salomon M, Hagerty S, Askevold RA, et al.. Resilient Landscape Vision for Upper Penitencia Creek. Richmond, CA: San Francisco Estuary Institute - Aquatic Science Center; 2018 . Report No.: 894.  (67.6 MB) (11.75 MB)
Beagle J, Richey A, Hagerty S, Stephens D, Quinn M, Spangler W, et al.. Sycamore Alluvial Woodland Planting Guide. 2018 . Report No.: 901.  (1.22 MB)

2017

Associates HTHarvey and, San Francisco Estuary Institute (SFEI). Annotated Bibliography for Sycamore Alluvial Woodland Habitat Mapping and Regeneration Studies Project. 2017.  (769.62 KB)
Beagle J, Richey A, Hagerty S, Salomon M, Askevold RA, Grossinger RM, et al.. Sycamore Alluvial Woodland: Habitat Mapping and Regeneration Study. 2017 . Report No.: 816.  (53.95 MB) (21.31 MB)
Baumgarten S, Grossinger RM, Beller EE, Trowbridge W, Askevold RA. Historical Ecology and Landscape Change in the Central Laguna de Santa Rosa. Richmond, CA: San Francisco Estuary Institute - Aquatic Science Center; 2017 . Report No.: 820.  (94.51 MB) (39.07 MB)
Greenbaum E, Beagle J, Collins JN, Gould C, Grenier JLetitia, Grossinger RM, et al.. Resilient By Design Briefing Book [Internet]. 2017 . http://www.resilientbayarea.org/briefing-book/ (13.8 MB)
Dusterhoff S, Pearce S, McKee LJ ., Doehring C, Beagle J, McKnight K, et al.. Changing Channels: Regional Information for Developing Multi-benefit Flood Control Channels at the Bay Interface. Flood Control 2.0. Richmond, CA: San Francisco Estuary Institute; 2017 . Report No.: 801.  (62.69 MB) (23.02 MB)
Lowe S. Lower Peninsula Watershed Condition Assessment 2016: Southwest San Francisco Bay, Santa Clara County, San Francisquito to Stevens Creeks. Technical memorandum prepared for the Santa Clara Valley Water District. Salomon M, Pearce S, Josh Collins, Titus D. Richmond: San Francisco Estuary Institute; 2017 p. 53. Report No.: 809.  (5.17 MB)
Spotswood E, Grossinger RM, Hagerty S, Beller EE, Grenier JLetitia, Askevold RA. Re-Oaking Silicon Valley: Building Vibrant Cities with Nature. Richmond, CA: San Francisco Estuary Institute; 2017 . Report No.: 825.  (65.64 MB) (31.88 MB)
Safran SM, Baumgarten SA, Beller EE, Crooks JA, Grossinger RM, Lorda J, et al.. Tijuana River Valley Historical Ecology Investigation. Richmond, CA: San Francisco Estuary Institute - Aquatic Science Center ; 2017 p. 230. Report No.: 760.  (232.2 MB) (73.63 MB)
Hale T, Grosso C. Applied Aquatic Science: A Business Plan for EcoAtlas. Richmond, CA: San Francisco Estuary Institue; 2017 .  (1.69 MB) (323.4 KB)
Robinson A, Beagle J, Safran SM, McKnight K, Grenier JLetitia, Askevold RA. Delta Landscapes Executive Summary. 2017 . Report No.: 853.  (23.99 MB)
Robinson A, Beagle J, Safran SM, McKnight K, Grenier JLetitia, Askevold RA. Delta Landscapes: A Delta Renewed User Guide. 2017 . Report No.: 854.  (28.86 MB)

2016

Cloern JE, Barnard PL, Beller EE, Callaway J, Grenier JLetitia, Grossinger RM, et al.. Estuaries: Life on the edge. In Ecosystems of California. Berkeley, CA: University of California Press; 2016. pp. 359-388.
Cloern JE, Robinson A, Richey A, Grenier JLetitia, Grossinger RM, Boyer KE, et al.. Primary Production in the Delta: Then and Now. San Francisco Estuary and Watershed Science. 2016;14(3).  (864.19 KB)
Beller EE, Downs PW, Grossinger RM, Orr BK, Salomon M. From past patterns to future potential: using historical ecology to inform river restoration on an intermittent California river. Landscape Ecology [Internet]. 2016;31(3):20. http://link.springer.com/article/10.1007%2Fs10980-015-0264-7
RipZET: Documentation of Tool Demonstration in Marin County. 2016.  (2.86 MB)
Safran SM, Clark E, Beller EE, Grossinger RM. Mission Bay Historical Ecology Reconnaissance Study: Data Collection Summary and Initial Findings (Presentation). 2016.  (47.38 MB)
Doehring C, Beagle J, Lowe J, Grossinger RM, Salomon M, Kauhanen P, et al.. San Francisco Bay Shore Inventory: Mapping for Sea Level Rise Planning. Richmond, CA: San Francisco Estuary Institute; 2016 . Report No.: 779.  (20.33 MB)
Salomon M, Dusterhoff SD, Askevold RA, Grossinger RM. San Francisquito Creek Baylands: Landscape Change Metrics Analysis. Flood Control 2.0. Richmond, CA: San Francisco Estuary Institute - Aquatic Science Center; 2016 p. 12. Report No.: 784.  (6.19 MB)
Robinson A, Safran SM, Beagle J, Grenier JLetitia, Grossinger RM, Spotswood E, et al.. A Delta Renewed: A Guide to Science-Based Ecological Restoration in the Sacramento-San Joaquin Delta. Delta Landscapes Project. Richmond, CA: San Francisco Estuary Institute - Aquatic Science Center; 2016 . Report No.: 799.  (121.28 MB) (17.67 MB)
Robinson A, Richey A, Cloern JE, Boyer KE, Burau J, Canuel E, et al.. Primary Production in the Sacramento-San Joaquin Delta: A Science Strategy to Quantify Change and Identify Future Potential. 2016 . Report No.: 781.  (4.26 MB)
Dusterhoff SD, Doehring C, Baumgarten S, Grossinger RM, Askevold RA. Resilient Landscape Vision for Lower Walnut Creek: Baseline Information and Management Strategies. Flood Control 2.0. Richmond, CA: San Francisco Estuary Institute-Aquatic Science Center; 2016 . Report No.: 782.  (17.42 MB) (44.8 MB)
Josh Collins, Lowe S. Framework to coordinate water quality improvement and wildlife habitat conservation to protect California streams, wetlands, and riparian areas. Richmond, CA: San Francisco Estuary Institute; 2016 p. 89. Report No.: 776.  (6.62 MB)
Safran SM, Clark E, Beller EE, Grossinger RM. Mission Bay Historical Ecology Reconnaissance Study: Data Collection Summary (Technical Report). 2016 . Report No.: 777.  (3.44 MB)
Pearce S, Lowe S, Collins JN. Depressional wetland habitat development curve. 2016 .  (451.13 KB)
Pearce S, Lowe S, Collins JN. Relationship between wetland condition, stress, and buffer. 2016 .  (15.06 MB)
Pearce S, Lowe S, Collins JN. The effects of aquatic area abundance, buffer, and hydrology on depressional wetland condition based on CRAM. 2016 .  (498.88 KB)
Lowe S, Sim L, Shusterman G, Grosso C, Collins JN. Enhancements to EcoAtlas’ CRAM analysis tools: Habitat Development Curves and Ecoregional Cumulative Distribution Function plots (CDFs). 2016 .  (4 MB)
Lowe S, Salomon M, Pearce S, Josh Collins, Titus D. Upper Pajaro River Watershed Condition Assessment 2015. Technical memorandum prepared for the Santa Clara Valley Water District - Priority D5 Project. Richmond, CA: San Francisco Estuary Institute; 2016 p. 60. Report No.: 810.  (6.46 MB)
Lowe S, Salomon M, Pearce S. Lower Peninsula Watershed Condition Assessment 2016. Technical memorandum prepared for the Santa Clara Valley Water District - Priority D5 Project. Richmond, CA: San Francisco Estuary Institute; 2016 p. 49. Report No.: 809.  (4.36 MB)
Pearce S, Lowe S, Collins JN. CRAM Fieldwork 2015 to Support Caltrans Project Tasks 2 & 3. 2016 .  (716.68 KB)
Safran SM, Grenier JLetitia, Grossinger RM. Ecological implications of modeled hydrodynamic changes in the upper San Francisco Estuary: Phase II Technical Memorandum. 2016 . Report No.: 786.  (955.14 KB)
Hale T, Grosso C. An Introduction to EcoAtlas: Applied Aquatic Science. Richmond, CA: San Francisco Estuary Institute; 2016 p. 16 pages.  (5.84 MB)
Pearce S, Lowe S, Collins JN. Relationship between wetland size and CRAM condition scores for depressional wetlands. 2016 .  (652.08 KB)

2015

Yarnell SM, Petts GE, Schmidt JC, Whipple AA, Beller EE, Dahm CN, et al.. Functional Flows in Modified Riverscapes: Hydrographs, Habitats and Opportunities. BioScience [Internet]. 2015;. http://bioscience.oxfordjournals.org/content/65/10/963
Beagle J, Downs PW, Grossinger RM, Orr BK, Salomon M. Historical ecology and landscape change in the Sacramento - San Joaquin Delta. HydroLink [Internet]. 2015;1. https://www.iahr.org/site/cms/newsarticle.asp?chapter=96&nid=643
Enright C, Siegel S, Grossinger RM, Winternitz L. Landscape scale restoration in the Sacramento San Joaquin Delta: Reconciling properties with projects for better ecological performance, less cost, and stakeholder acceptance. HydroLink [Internet]. 2015;(1). https://www.iahr.org/site/cms/newsarticle.asp?chapter=96&nid=643
Doehring C, Lowe J, Grossinger RM, Senn DB, Connor M, Beyeler M, et al.. Re-Plumbing the East Bay: Opportunities to Increase Bayshore Resiliency and Reduce Infrastructure Vulnerability (Poster). 2015.  (5.63 MB)
Lowe S, Grosso C, Pearce S, Robinson A, Salomon M, Kauhanen P, et al.. Stream Health of the Coyote Creek and Guadalupe River Watersheds using WRAMP. Richmond, CA; 2015.  (5.69 MB)
Beller EE, Robinson A, Grossinger RM, Grenier JLetitia, Davenport A, Spotswood E. Operationalizing Landscape Resilience: Enhancing Biodiversity and Ecological Function at the Landscape Scale. 2015.  (4.19 MB)
Safran SM. The Tijuana River Valley: An Ecological Look into the Past. 2015.  (49.38 MB)
Lowe S. Project: Statistical Design, Analysis and Guidance on the Pajaro and Lower Peninsula Watershed Assessments. TASK 3: GRTS Survey Designs and Sample Draws Memorandum – Pajaro and Lower Peninsula Watersheds. 2015 . Report No.: 763.  (641.94 KB)
Lowe S, Salomon M. Project: Statistical Design, Analysis and Guidance on the Pajaro and Lower Peninsula Watershed Assessments. TASK 2: Basis of Assessment Memorandum – Review Existing GIS Data & Develop Stream Assessment Study Designs for the Pajaro and Lower Peninsula Wate. 2015 . Report No.: 762.  (1.42 MB)
Beyeler M, Mehaffy M, Connor M, Doehring C, Lowe J, Grossinger R, et al.. Decentralized Wastewater Discharges and Multiple Benefit Natural Infrastructure: Preliminary Analysis and Next Steps (Final Project Report). East Bay Dischargers Authority ; 2015 .  (7.78 MB)
Grossinger RM, Dusterhoff SD, Doehring C, Salomon M, Askevold RA. Novato Creek Baylands Vision: Integrating ecological functions and flood protection within a climate-resilient landscape. 2015 . Report No.: 764.  (21.5 MB)
Baumgarten S, Beller EE, Grossinger RM, Askevold RA. Mt. Wanda Historical Ecology Investigation. Richmond, CA: San Francisco Estuary Institute - Aquatic Science Center; 2015 p. 51. Report No.: 743.  (20.92 MB) (57.9 MB)
Beller EE, Robinson A, Grossinger RM, Grenier JLetitia. Landscape Resilience Framework: Operationalizing Ecological Resilience at the Landscape Scale [Internet]. Richmond, CA: San Francisco Estuary Institute - Aquatic Science Center; 2015 . Report No.: 752. http://resilientsv.sfei.org/ (5.18 MB)
Robinson A, Beller EE, Grossinger RM, Grenier JLetitia. Vision for a Resilient Silicon Valley Landscape. 2015 . Report No.: 753.  (21.78 MB)
Beagle J, Salomon M, Grossinger RM, Baumgarten S, Askevold RA. Shifting Shores: Marsh Expansion and Retreat in San Pablo Bay. 2015 . Report No.: 751.  (93.2 MB) (31.73 MB)
San Francisco Estuary Institute. RipZET: The Riparian Zone Estimation Tool version 2.0. Richmond, CA: San Francisco Estuary Institute; 2015 .  (5.11 MB)
The Baylands and Climate Change: What We Can Do. Baylands Ecosystem Habitat Goals Science Update 2015. Oakland, CA: California State Coastal Conservancy; 2015 .  (31.68 MB)
Salomon M, Baumgarten S, Dusterhoff SD, Beller EE, Askevold RA. Novato Creek Baylands Historical Ecology Study. Richmond, CA: San Francisco Estuary Institute - Aquatic Science Center; 2015 . Report No.: 740.  (27.13 MB)
San Francisco Estuary Institute. RipZET User's Manual v1.0. Richmond, CA: San Francisco Estuary Institute; 2015 .  (5.28 MB)
San Francisco Estuary Institute. Riparian Zone Estimation Tool Hydrologic Connectivity Module: Documentation and Validation of Selected Methodology. 745: San Francisco Estuary Institute; 2015 .  (3.15 MB)

2014

Venture SFrancsico. What is Flood Control 2.0 (Podcast) [Internet]. 2014. http://www.yourwetlands.org/podcasts.php (2.67 MB)
San Francisco Estuary Institute. EcoAtlas and CRAM Factsheet. 2014.  (26.19 MB)
Beller EE, Askevold RA, Grossinger RM. Futures Past: Exploring California Landscapes with SFEI. Boom: A Journal of California [Internet]. 2014;4(3):24. http://www.boomcalifornia.com/2014/09/futures-past (6.67 MB)
Beller EE, Askevold RA, Grossinger RM. Futures Past Exploring California landscapes with the San Francisco Estuary Institute. Boom: The Journal of California . 2014;4(3):4-27.
Grossinger RM, Askevold RA, Beagle J, Grenier JLetitia, Robinson AH, Safran SM. Delta Landscape Metrics: Creating a Spatial Framework to Inform Restoration Planning [Internet]. Sacramento, CA; 2014. http://sfei.org/projects/delta-landscapes-project (8.36 MB)
Dusterhoff S, Collins JN, Hale T, Lowe S, Kunze M, Cayce K. RipZET: A GIS-Based Decision Support Tool for Estimating Riparian Zones at the Watershed and/or Project Scale. Richmond, CA; 2014.  (3.81 MB)
Stein ED, Cayce K, Salomon MN, Bram DL, De Mello D, Grossinger RM, et al.. Wetlands of the Southern California Coast: Historical Extent and Change Over Time [Internet]. Costa Mesa, Richmond, Northridge: Southern California Coastal watershed Research Project (SCCWRP), San Francisco Estuary Institute (SFEI), CSU Northridge Center for Geographical Studies; 2014 . Report No.: 720. http://www.sfei.org/projects/SoCalTSheets_2 (5.96 MB)
San Francisco Estuary Institute. NCARI North Coast Aquatic Resources Inventory. Mapping Standards and Methodology for Channels, Wetlands, in the Santa Rosa Plain, CA. 2014 .  (1.94 MB)
Robinson A, Slotton DG, Lowe S, Davis JA. North Bay Mercury Biosentinel Project (December 2014 Report). Richmond, CA: San Francisco Estuary Institute; 2014 . Report No.: 738.  (2.88 MB)
Dusterhoff SD, Beagle J, Collins JN, Doehring C. Initial Protocol to Identify and Delineate the Head of Tide Zone in San Francisco Bay Tributaries [Internet]. Richmond, CA: San Francisco Estuary Institute; 2014 . Report No.: 719. http://www.sfei.org/projects/head-tide (8.39 MB)
SFEI, Safran SM. Natural Flow Hydrodynamic Modeling Technology Support Phase 1 Technical Memorandum. 2014 .  (3.13 MB)
Beagle J, Baumgarten S, Grossinger RM, Askevold RA, Stanford B. Landscape Scale Management Strategies for Arroyo Mocho and Arroyo Las Positas: Process-Based Approaches for Dynamic, Multi-Benefit Urban Channels. Richmond, CA: San Francisco Estuary Institute; 2014 . Report No.: 714.  (45.32 MB)
Robinson AH, Safran SM, Beagle J, Grossinger RM, Grenier JLetitia, Askevold RA. A Delta Transformed: Ecological Functions, Spatial Metrics, and Landscape Change in the Sacramento-San Joaquin Delta [Internet]. Richmond, CA: San Francisco Estuary Institute - Aquatic Science Center; 2014 . Report No.: 729. http://sfei.org/projects/delta-landscapes-project (58.56 MB) (11.76 MB)
Collins JN, Lowe S, Pearce S, Roberts C. Santa Rosa Plain Wetlands Profile: A Demonstration of the CaliforniaWetland and Riparian Area Monitoring Plan. Richmond, CA: San Francisco Estuary Institute - Aquatic Science Center; 2014 p. 46. Report No.: 726.  (3.03 MB)
Baumgarten S, Beller EE, Grossinger RM, Striplen CJ, Brown H, Dusterhoff SD, et al.. Historical Changes in Channel Alignment along Lower Laguna de Santa Rosa and Mark West Creek. Richmond, CA: SFEI; 2014 .  (9.78 MB)
Beller EE, Baumgarten S, Grossinger RM, Longcore T, Stein ED, Dark S, et al.. Northern San Diego County Lagoons Historical Ecology Investigation [Internet]. Richmond, CA: San Francisco Estuary Institute - Aquatic Science Center; 2014 p. 215. Report No.: 722. http://www.sfei.org/HE_San_Diego_Lagoons (305.02 MB) (50.9 MB)
Lowe S, Robinson A, Frontiera P, Cayce K, Collins JN. Creating Landscape Profiles of Aquatic Resource Abundance, Diversity and Condition. Richmond, CA: San Francisco Estuary Institute - Aquatic Science Center; 2014 p. 21. Report No.: 725.  (651.67 KB)
Dusterhoff SD, Doehring C, Shusterman G. How Creeks Meet the Bay: Changing Interfaces (Interactive web map) [Internet]. 2014. http://storymaps.sfei.org/flood-control/

2013

Safran SM, Robinson A, Beagle J, Klatt M, Cayce K, Grossinger RM. A landscape ecology analysis of San Francisco Bay-Delta marsh then (1850) and now. Oakland, CA; 2013.  (20.08 MB)
Stanford B, Grossinger RM, Beagle J, Askevold RA, Leidy RA, Beller EE, et al.. Alameda Creek Watershed Historical Ecology Study [Internet]. Richmond, CA: San Francisco Estuary Institute; 2013 . http://www.sfei.org/projects/AlamedaCreekHE (335.05 MB) (163.08 MB)
Lowe S, Josh Collins, Pearce S. Statistical Design, Analysis, and Graphics for the Guadalupe River Watershed Assessment 2012. Richmond, CA: San Francisco Estuary Institute; 2013 . Report No.: 687.  (4.88 MB)
Beller EE, Salomon M, Grossinger RM. An Assessment of the South Bay Historical Tidal-Terrestrial Transition Zone [Internet]. Richmond, CA: San Francisco Estuary Institute; 2013 . Report No.: 693. http://www.sfei.org/TZone_SouthSFBay (7.87 MB)
San Francisco Estuary Institute, Conservancy CTahoe. TARI Tahoe Aquatic Resources Inventory. Mapping Standards and Methodology for Channels, Wetlands, and Riparian Areas in the Tahoe Basin. 2013 .  (2.43 MB)
San Francisco Estuary Institute. Riparian Zone Estimation Tool: Hydrologic Connectivity Module Field Plan. Richmond, CA: San Francisco Estuary Institute; 2013 .  (5.1 MB)
Johnson BE, Evett RR, Lightfoot KG, Striplen CJ. Exploring the Traditional Use of Fire in the Coastal Mountains of Central California [Internet]. Joint Fire Science Program; 2013 . https://www.firescience.gov/JFSP_advanced_search_results_detail.cfm?jdbid=%24%26Z%3B%3BV%40%20%20%0A (2.37 MB)
Beagle J, Whipple A, Grossinger RM. Landscape Patterns and Processes of the McCormack-Williamson Tract and Surrounding Area: A framework for restoring a resilient and functional landscape [Internet]. Richmond, CA: SFEI-ASC; 2013 . Report No.: 674. http://www.sfei.org/projects/delta-mccormack-williamson-tract (21.34 MB)

2012

Grossinger RM, Askevold RA, Beagle J, Beller EE, Brewster E, Gardner S, et al.. Napa Valley Historical Ecology Atlas: Exploring a Hidden Landscape of Transformation and Resilience [Internet]. Berkeley: UC Press; 2012. p. 223. http://www.sfei.org/projects/napa-valley-historical-ecology-atlas
Whipple A, Askevold RA, Rankin D, Stanford B, Salomon M. Delta Historical Ecology GIS Data [Internet]. Richmond: San Francisco Estuary Institute - Aquatic Science Center; 2012. http://www.sfei.org/DeltaHEStudy (10.88 MB)
Sowers JM, Salomon MN, Ticci M, Beller EE, Grossinger RM. Watching Our Watersheds: Santa Clara Valley Past [Internet]. Santa Clara Valley Water District; 2012. p. Google Earth KMZ files: Santa Clara Valley historical points of interest, stream courses and habitats. http://www.valleywater.org/WOW.aspx (10.61 MB)
Beagle J, Whipple A, Grossinger RM. Historical Ecology and Landscape-Scale Restoration. Application to the McCormack-Williamson Tract. Sacramento, CA; 2012.  (110.26 MB)
Whipple A, Grossinger RM, Rankin D. Building a Landscape Perspective for the Delta: Lessons from Historical Ecology. Sacramento, CA; 2012.  (2.21 MB)
Beller EE, Safran SM, Grossinger R, Grenier JLetitia, Whipple A, Beagle J, et al.. Developing Tools for Landscape-Scale Restoration in the Delta. Sacramento, CA; 2012.  (4.59 MB)
Program HEcology. Historical Ecology of the McCormack-Williamson Tract: A Landscape Framework for Restoration. Richmond, CA: Aquatic Science Center / San Francisco Estuary; 2012 . Report No.: 674.
Whipple A, Grossinger RM, Rankin D, Stanford B, Askevold RA. Sacramento-San Joaquin Delta Historical Ecology Investigation: Exploring Pattern and Process [Internet]. Richmond: SFEI; 2012 . Report No.: 672. http://www.sfei.org/DeltaHEStudy (252.87 MB) (135.09 MB) (44.2 MB)
Beller EE, Grossinger RM, Nicholson M, Salomon M. Upper Penitencia Creek Historical Ecology Assessment [Internet]. Richmond, CA: SFEI; 2012 . Report No.: 664. http://www.sfei.org/UpperPen_HE (16.48 MB)

2011

Grossinger RM, Beller EE. Oak Landscapes in the Recent Past. In: Costello LR, Hagen BW, Jones KS. Oaks in the Urban Landscape: Selection, Care, and Preservation. Richmond, CA: University of California Agriculture and Natural Resources; 2011.
Salomon M, San Francisco Estuary Institute, Costa Cof Contra. Contra Costa County 1939 Aerial Photomosaic [Internet]. Oakland, CA: SFEI; 2011. p. GIS layer containing orthorectified historical aerial imagery of Contra Costa County from 1939. http://oskicat.berkeley.edu/record=b18637538~S1
Grossinger RM, Salomon M, Beller EE, Stanford B, Whipple A. Ventura Historical Ecology Study GIS data [Internet]. 2011. http://www.sfei.org/projects/VenturaHE (47.1 KB) (2.42 MB)
Askevold RA, Whipple A, Grossinger RM, Stanford B, Salomon MN. East Contra Costa Historical Ecology Study GIS data [Internet]. 2011. p. GIS data produced for the East Contra Costa County Historical Ecology Study. http://www.sfei.org/HEEastContraCosta (5.37 MB) (3.1 MB)
Salomon M, Grossinger RM, Askevold RA, Beller EE, Whipple A. Santa Clara Valley Historical Ecology GIS Data [Internet]. 2011. http://www.sfei.org/projects/santa-clara-valley-historical-ecology-gis (15.59 MB) (59.08 KB)
Whipple A, Grossinger RM. Habitat Characteristics of Past Delta Landscapes: Knowledge for Improving Future Ecosystem Resilience [Internet]. Folsom, CA; 2011. http://www.sfei.org/DeltaHEStudy (8.53 MB)
Askevold RA. Historical Ecology of Alameda Creek: Niles Cone to Tidal Marsh. Hayward, CA; 2011.  (20.32 MB)
San Francisco Estuary Institute. Ecological Monitoring & Assessment Framework: Stream Ecosystem Condition Profile: Coyote Creek Watershed . Oakland, CA: San Francisco Estuary Institute; 2011 p. 109.  (3.83 MB) (1.88 MB)
Beller EE, Grossinger RM, Salomon M, Dark S, Stein E, Orr BK, et al.. Historical Ecology of the lower Santa Clara River, Ventura River, and Oxnard Plain: an analysis of terrestrial, riverine, and coastal habitats [Internet]. Oakland: SFEI; 2011 . Report No.: 641. http://www.sfei.org/projects/VenturaHE (17.09 MB) (201.86 MB)
Stanford B, Grossinger RM, Askevold RA, Whipple A, Leidy RA, Beller EE, et al.. East Contra Costa Historical Ecology Study [Internet]. Oakland: SFEI; 2011 . Report No.: 648. http://www.sfei.org/HEEastContraCosta (17.71 MB) (123.69 MB) (149.82 MB) (193.36 MB)
David N, Lent MA, Leatherbarrow JE, Yee D, McKee LJ .. Bioretention Monitoring at the Daly City Library (Case Study Technical Report). Oakland, CA: San Francisco Estuary Institute; 2011 .  (14.26 MB)
San Francisco Estuary Institute. Bay Area Aquatic Resources Inventory (BAARI) . 2011 p. 79. Report No.: 746.  (41.31 MB)

2010

Whipple A, Grossinger RM, Davis FW. Shifting Baselines in a California Oak Savanna: Nineteenth Century Data to Inform Restoration Scenarios. Restoration Ecology [Internet]. 2010;19(101):88-101. http://onlinelibrary.wiley.com/doi/10.1111/j.1526-100X.2009.00633.x/full
Grenier JLetitia, Davis JA. Water Quality in South San Francisco Bay, California: Current Condition and Potential Issues for the South Bay Salt Pond Restoration Project. Reviews of Environmental Contamination and Toxicology [Internet]. 2010;206:115-147. http://www.springerlink.com/content/v710304548244k08/ (880.04 KB)
Grossinger RM. The Historical Ecology of Alameda Creek: recent findings. Castro Valley; 2010.  (16.52 MB)
Grossinger RM. Historical San Francisco Bay Shoreline: Perspectives on the Past and Future. 2010.
Whipple A. Historical Ecology of the Delta: Habitat characteristics of a fluvial-tidal landscape [Internet]. Sacramento, CA; 2010. http://www.sfei.org/DeltaHEStudy (1.46 MB)
David N, Thomas F. Comparison of Agricultural Runoff from Conventional and Organic Orchards. San Francisco, Ca; 2010.
Grossinger RM, Whipple A, Rankin D, Collins JN. Historical Delta Landscapes: Conceptual models for building a diverse and resilient future [Internet]. Sacramento, CA; 2010. http://www.sfei.org/DeltaHEStudy (5.17 MB)
Askevold RA. Using GIS to Recreate Historical Habitat Patterns. 2010.
Whipple A, Grossinger RM, Rankin D, Collins JN. The Historical Yolo Basin Landscape: What parts make the whole? [Internet]. Sacramento, CA; 2010. http://www.sfei.org/DeltaHEStudy (4.92 MB)
Beller EE, Salomon M, Grossinger RM. Historical Vegetation and Drainage Patterns of Western Santa Clara Valley: A technical memorandum describing landscape ecology in Lower Peninsula, West Valley, and Guadalupe Watershed Management Areas [Internet]. Oakland: SFEI; 2010 . Report No.: 622. http://www.sfei.org/scvheproject (43.77 MB) (1.29 MB)

2009

David N, McKee LJ .. Mercury Concentrations and Loads in a Large River System Tributary to San Francisco Bay, California, USA. Environmental Toxicology and Chemistry. 2009;.  (725.12 KB)
Bay Area Base Map. 2009.  (1.27 MB)
Grossinger RM, Whipple A. Historical Ecology of the California Delta: Emerging Concepts of a Complex and Dynamic System [Internet]. 2009. http://www.sfei.org/DeltaHEStudy (1.62 MB)
Grossinger RM. Historical Wetlands of the South Coast: Landscape Patterns at the Regional and Local Scale. Long Beach, Ca; 2009.
Beller EE. Historical Significance of creosote-treated structures. 2009.
Askevold RA, Fateman A, Whipple A, Stanford B, Grossinger RM, Kopchik J. Historical Ecology Informing Restoration in East Contra Costa County: Wetland Restoration Opportunities on a Tributary to Brushy Creek (Souza II Property). 2009.  (4.77 MB)
Askevold RA. Clues on the Map: Using Historical Maps to Recreate California Indigenous Landscapes in a GIS. UC Berkeley; 2009.
Askevold RA. Historical Ecology Helps Design Natural Flood Protection Strategies. 2009.
David N. Comparison of Agricultural Runoff between Organic Farming and Conventional Chemical Farming. 2009.  (1.52 MB)
Grossinger RM, Whipple A. Re-Oaking the Valleys: Bringing Native Trees Back into California’s Suburban Landscapes. Oakland, Ca; 2009.  (2.7 MB)
Askevold RA. The Historical Ecology of Eastern Contra Costa County: Preliminary Findings. Contra Costa, Martinez, John Muir House; 2009.
Klatt M, Cayce K, Williams M, Collins JN. Bay Area Base Map of Aquatic Habitats. Oakland,Ca; 2009.  (84.32 MB)
Grossinger RM. The Historical Ecology of the South Santa Clara County from Coyote Creek to the Pajaro Basin. 2009.
Collins JN, Solek C, Connor KO', Fetscher E, Clark C, Rey K, et al.. California’s Statewide Survey Of Tidal Wetland Condition. Oakland,Ca; 2009.  (1.49 MB)
Askevold RA. Reoccupying historical maps to recreate historical landscape. 2009.
David N, McKee LJ ., Krebs J. Green Infill for Clean Stormwater (Poster). Oakland, Ca; 2009.  (12.67 MB)
Hermstad D, Cayce K, Grossinger RM. Historical Ecology of Lower San Francisquito Creek Phase 1. Oakland, Ca: San Francisco Estuary Institute; 2009 .  (3.99 MB)
McKee LJ ., Lewicki M. Watershed Specific and Regional Scale Suspended Sediment Load Estimates for Bay Area Small Tributaries. Oakland, Ca; 2009 . Report No.: 566.  (983.2 KB)
McKee LJ ., Gilbreath AN. Concentrations and Loads of Trace Contaminants in the Zone 4 Line A Small Tributary, Hayward, California: Water Year 2007. Oakland,Ca: San Francisco Estuary Institute; 2009 . Report No.: 563.  (6.77 MB)
David N. Sustainable Cotton Project. Oakland, Ca: San Francisco Estuary Institute; 2009 . Report No.: 592.  (950.03 KB)
Williams M, Cayce K. WRMP Factsheet — Wetland and Riparian Base Map. Oakland, Ca: San Francisco Estuary Institute; 2009 .  (1.25 MB)
David N, McKee LJ .. Going Organic Project. Oakland, Ca: San Francisco Estuary Institute; 2009 . Report No.: 588.  (3.09 MB)
Askevold RA, Beller EE, Stanford B, Grossinger RM. The Historical Ecology of Alameda Creek: Introductory Brochure. 2009 .  (2.88 MB)
Beller EE, Grossinger RM, Whipple A. Historical Ecology Reconnaissance for the Lower Salinas River [Internet]. Richmond: San Francisco Estuary Institute; 2009 p. 32. Report No.: 581. http://www.sfei.org/projects/lower-salinas-river-historical-ecology-reconnaissance (44 MB)
Stanford B, Ridolfi K, Greenfield BK. Summary Report: Green Sturgeon, Longfin Smelt, and Dredging Operations in the San Francisco Estuary. Oakland, Ca: San Francisco Estuary Institute; 2009 . Report No.: 598.  (4.1 MB)
Bigelow P, Pearce S, McKee LJ .. Dry Creek Watershed Sediment Source Reconnaissance Technical Memorandum. Oakland,Ca: San Francisco Estuary Institute; 2009 . Report No.: 595.  (3.06 MB) (27.1 MB)

2008

San Francisco Estuary Institute. California Rapid Assessment Method (CRAM) Fact Sheet, Level 2, State version. 2008. p. 2 pages.  (390.99 KB)
San Francisco Estuary Institute. Wetland Tracker Factsheet, Level 1: Landscape Assessment, CA State version. 2008.
McKee LJ ., Collins JN, Pearce S, Gilbreath AN, Bigelow P, Ridolfi K. Alameda Creek Sediment Forum [Internet]. 2008. alamedacreek
McKee LJ ., Pearce S, Shonkoff S. Pinole Creek Watershed Sediment Source Assessments. 2008.
Pearce S. Vineyard Management in a Watershed Context: everyone'swater and sediment counts!. 2008.
Grossinger RM. Napa Watershed Symposium. 2008.
Whipple A, Grossinger RM, Wilcox C. Pre-Modification Habitat Mosaics of the Delta: Looking to the Past to Envision the Future. Sacramento, CA; 2008.  (6.44 MB)
San Francisco Estuary Institute. California Rapid Assessment Method (CRAM) Fact Sheet, Level 2, State version. Oakland, Ca: San Francisco Estuary Institute; 2008. p. 2 pages.  (390.99 KB)
Collins JN, Hoenicke R. Setting Goals and Defining Watershed and Stream "Health" to Better Integrate Policies, Programs, and Projects. 2008.  (5.3 MB)
Collins JN, Grenier JLetitia, Sutula M. Developing Tools to Help Protect and Manage California Wetlands, Streams, and Riparian Resources [Internet]. 2008. http://www.sws.org/2008_meeting/
San Francisco Estuary Institute. CMARP Phase III Technical Support: Highlighting Monitoring Activities and Recommendations for Addressing Shortfalls and Improving Monitoring Coordination in the Delta-Suisun Bay Planning Area. Department of Fish and Game, Central Valley Bay-Delta Branch, Ecosystem Restoration Program; 2008 . Report No.: 565.
McKee LJ ., Gilbreath AN. Spatiotemporal variation of turbidity in Alameda Creek and selected tributaries: August thru December 2007. San Francisco Estuary Institute; 2008 . Report No.: 547.
Whipple A, Grossinger RM, Askevold RA. An Introduction to the Historical Ecology of the Watsonville Sloughs: a Tool for the Critical Coastal Area Action Plan. San Francisco Estuary Institute; 2008 .  (1.32 MB) (16.53 MB)
Salomon M, Grossinger RM, Dawson A, Askevold RA. An Introduction to the Historical Ecology of the Sonoma Creek Watershed: a Tool for the Critical Coastal Area Action Plan. San Francisco Estuary Institute; 2008 .  (20.83 MB)
Jabusch TW, Swanson T, Pawley A, Hoenicke R. Development of an environmental indicator system for watershed-based decision-making and tracking the outcomes of beneficial use restoration in the San Joaquin River basin. 2008 . Report No.: 556.  (4.78 MB)
San Francisco Estuary Institute. Wetland Tracker Factsheet, Bay Area, Level 1: Landscpae Assessment. SFEI; 2008 p. 2, front and back. Report No.: 568.  (330.46 KB)
Grossinger RM, Collins JN, Beller EE, Gardner S. The Historical Ecology of Napa Valley: An Introduction. 2008 . Report No.: 557.  (33.68 MB) (5.01 MB)
McKee LJ . Review of sediment gauging studies in Alameda Creek Watershed. San Francisco Estuary Institute; 2008 . Report No.: 571.
Whipple A, Grossinger RM, Askevold RA. An Introduction to the Historical Ecology of the Fitzgerald Marine Reserve: a Tool for the Critical Coastal Area Action Plan. 2008 .  (19.1 MB) (1.64 MB)
Grossinger RM, Beller EE, Salomon M, Whipple A, Askevold RA, Striplen CJ, et al.. South Santa Clara Valley Historical Ecology Study, including Soap Lake, the Upper Pajaro River, and Llagas, Uvas-Carnadero, and Pacheco Creeks [Internet]. 2008 . http://www.sfei.org/SouthStaClaraValleyHEStudy (26.39 MB) (6.81 MB) (14.42 MB) (20.34 MB) (51.26 MB) (42.1 MB) (33.12 MB) (63.69 MB)
Salomon M, Collins JN, Striplen CJ, Brewster E, Grossinger RM. The Historical Ecology of Miller Creek [Internet]. County of MarinThe Watershed ProjectSan Francisco Estuary InstituteNorth Bay Watershed Association; 2008. http://www.nbwatershed.org/millercreek/

2007

Grossinger RM, Striplen CJ, Askevold RA, Brewster E, Beller EE. Historical landscape ecology of an urbanized California valley: wetlands and woodlands in the Santa Clara Valley. Landscape Ecology. 2007;:103-120.  (609.88 KB)
Malamud-Roam FP, Watson EB, Collins JP, Ingram BL, Malamud-Roam K. The Quarternary geography and biogeography of tidal saltmarshes. Bioscience. 2007;56:675-685.
Striplen CJ, Diekmann L, Panich L. Native American Management and the Legacy of Working Landscapes in California. Rangelands. 2007;.
David N, Thomas F, Gibbs M. Comparison of Agricultural Run-off between Biological Farming and Conventional Chemical Farming. Pacific Grove; 2007.  (1.98 MB)
Grossinger RM. Understanding Historical And Contemporary Salmonid Habitat Potential: assessment of the Napa River. 2007.
David N, Thomas F, Gibbs M. Comparison of Agricultural Run-off between Biological Farming and Conventional Chemical Farming. 2007.  (1.98 MB)
Collins JN, Hoenicke R. Aligning Socio-Economic and Ecological Condition Valuation. 2007.  (2.34 MB)
Beller EE, Grossinger RM, Askevold RA, Pearce S, Collins JN, McKee LJ ., et al.. Streams, Wetlands, and Woodlands in the Napa Valley: New Perspectives from Old Maps. Oakland, CA; 2007.  (2.7 MB)
Grossinger RM, Salomon M, Striplen CJ, Beller EE, Askevold RA. Historical Ecology of South Santa Clara County: Preliminary Findings. A Technical Memorandum to the Santa Clara Valley Habitat Conservation Plan/Natural Community Conservation Plan. 2007 . Report No.: 527.  (36.53 MB)
Ridolfi K. Appendix 1: All Deliverables Submitted for the Critical Coastal Areas Program, Phase I [Internet]. San Francisco Estuary Institute; 2007 . node/1188 (14.83 MB)
McKee LJ ., Pearce S, Gilbreath AN. Stream Inventory Report for La Honda Creek: Prepared for the Midpeninsula Regional Open Space District. San Francisco Estuary Institute; 2007 . Report No.: 529.  (29.72 MB)
Beller EE, Whipple A, Askevold RA, Grossinger RM. The Historical Ecology of Contra Costa County: An Illustrated Preview and Guide. 2007 .  (8.81 MB)
Beller EE, Whipple A, Askevold RA, Grossinger RM, Fateman A, Kopchik J, et al.. East Contra Costa County Historical Ecology Study: Introductory Brochure. 2007 .  (8.81 MB)
Hoenicke R. Project Assessment and Evaluation. 2007 .
Ridolfi K, Hoenicke R, Van Velsor K. Critical Coastal Areas Program, Phase I Final Report [Internet]. San Francisco Estuary Institute; 2007 . Report No.: 541. node/1188 (10.77 MB)
Collins JN. CRAM Evaluation of Wetland Conditions. Elk Grove, California; 2007 p. 15. Report No.: 544.  (5.29 MB)
Grossinger RM, Sutula M, Stein E, Dark S, Longcore T, Hall N, et al.. Historical Ecology and Landscape Change of the San Gabriel River and Floodplain. 2007 .  (16.49 MB)
Grossinger RM, Beller EE. Landscape History of the Trancas: Historical Ecology Reseach Summary for the Trancas Crossing Park and Napa River Trail. 2007 .  (1.26 MB)
Collins JN, Grenier JLetitia, Didonato J, Geupel G, Kucera T, Lidicker B, et al.. Ecological Connections between Baylands and Uplands: Examples from Marin County. 2007 . Report No.: 521.  (34.69 MB)
Leidy RA. Ecology, Assemblage Structure, Distribution, and Status of Fishes in Streams Tributary to the San Francisco Estuary, California [Internet]. San Francisco Estuary Institute and the EPA; 2007 p. 194. Report No.: 530. http://www.sfei.org/leidy_No530/index.html (1.4 MB) (12.83 MB) (20.17 MB)

2006

Greenfield BK, Spencer DF, Ksander GG, Donovan MJ, Liow PS, Chan WK, et al.. Evaluation of water hyacinth survival and growth in the Sacramento Delta, California following cutting. J. of Aquatic Plant Management. 2006;.  (781.42 KB)
Grenier JLetitia, Latif Q, Heath S, Ballard G, Hauber ME. First evidence of conspecific brood parasitism in song sparrows with comments on methods sufficient to document this behavior. Condor. 2006;.  (73.25 KB)
Collins JN, Odaya M, Sutula M, Stein E, Cayce K, Zhang E. Comparison of Methods to Map California Riparian Areas. 2006;.  (13.1 MB)
Grenier JLetitia, Greenberg R. Trophic adaptations in sparrows and other vertebrates of tidal marshes. Studies in Avian Biology. 2006;.
Sowers JM, Grossinger RM, Vorster RC. Creek and Watershed Map of Richmond and Vicinity [Internet]. Oakland, CA; 2006. http://museumca.org/product/creek-watershed-map-richmond-vicinity
McKee LJ ., Mangarella P. Mercury budget for stormwater conveyances in the San Francisco Bay Area: Towards achieving TMDL management goals for sediment and fish tissue. 2006.  (640.34 KB)
McKee LJ ., GeoSyntec. Review of methods to reduce urban stormwater loads. Oakland: San Francisco Estuary Institute; 2006 p. 150xx. Report No.: 429.  (6.43 MB)
Grossinger RM, Askevold RA, Striplen CJ, Brewster E, Pearce S, Cayce K, et al.. Coyote Creek Watershed Historical Ecology Study: Historical Conditions and Landscape Change in the Eastern Santa Clara Valley, California [Internet]. San Francisco Estuary Institute; 2006 . Report No.: 426. coyotecreek (188.33 MB) (27.61 MB) (27.49 MB)
Oram JJ, McKee LJ ., Bonnema A, Heim W, Stephenson M, Leatherbarrow JE. Concentrations and Loads of Mercury, PCBs and PBDEs in the Lower Guadalupe River, San Jose, California: Water Years 2003, 2004, and 2005. Oakland: San Francisco Estuary Institute; 2006 . Report No.: 424.  (11.98 MB)
McKee LJ ., Pearce S, Shonkoff S. Pinole Creek Sediment Source Assessment: Pavon Creeks Sub-basin. San Francisco Estuary Institute; 2006 p. 67. Report No.: 515.  (51.71 MB) (25.63 MB)
Collins JN, Grosso C. Second Annual Report Montezuma Wetlands Restoration Project Technical Review Team. 2006 . Report No.: 516.  (57.39 MB)
Grossinger RM, Collins JN, Cayce K, Askevold RA, Featherston T, Zhang E. U.S. Coast Survey Maps of SFBay [Internet]. San Francisco Estuary Institute, prepared for Santa Clara Valley Urban Runoff Pollution Prevential Program; 2006. http://maps.sfei.org/tSheets/viewer.htm

2005

Grossinger RM. Documenting Local Landscape Change: The Bay Area Historical Ecology Project. In The HISTORICAL ECOLOGY HANDBOOK: A Restorationist's Guide to Reference Ecosystems [Internet]. Island Press; 2005. http://www.islandpress.org/books/detail.html/SKU/1-59726-033-9
Collins JN, Clark R, Sutula MA, Stein ED, Fetscher AE. A practical guide for the development of a wetland rapid assessment method: the California experience. J. of the American Water Resources Association. 2005;.
McKee LJ ., Pearce S, Shonkoff SB. Pinole Creek Watershed Sediment Source Assessment. A technical report of the Regional Watershed Program, San Francisco Estuary Institute (SFEI), Oakland, California. (plotter-sized landslide map only). Oakland, CA: San Francisco Estuary Institute; 2005.  (19.55 MB)
McKee LJ ., Leatherbarrow JE. Characterization of mercury concentrations in suspended sediment loads in Guadalupe River and Coyote Creek, San Jose, California: Can TMDL targets be met?. Henry J. Kaiser Convention Center, Oakland California; 2005.  (3.27 MB)
Cayce K. South Bay Salt Pond Restoration Project Interactive Map. Henry J. Kaiser Convention Center, Oakland California; 2005.  (3.64 MB)
Grossinger RM, Askevold RA. Baylands and Creeks of South San Francisco Bay. Henry J. Kaiser Convention Center, Oakland CA; 2005.  (8.17 MB)
Collins JN, Wheetly M, Potter C, Breaux A, Clark R, Featherston T, et al.. An Integrated Wetlands Assessment Program for the San Francisco Bay Area and California. Henry J. Kaiser Convention Center; 2005.  (4.6 MB)
McKee LJ ., Pearce S, Arnold C, Hokholt L. Pinole Creek Watershed Sediment Source Assessment: A sediment budget approach highlighting watershed-scale sediment-related processes and supply to the Bay [Internet]. Henry J. Kaiser Convention Center, Oakland, CA; 2005. http://www.sfei.org/presentations_posters/SOE_05/index_poster.html (2.02 MB)
McKee LJ ., Leatherbarrow JE. Mercury and methylmercury loads entering San Francisco Bay from the historic New Almaden mercury mines. 2005.
Collins JN, Zhang E, May M, Breaux A, Martindale M, Tuxen K, et al.. The Wetland Project Tracker. Henry J. Kaiser Convention Center, Oakland California; 2005.  (3.45 MB)
McKee LJ ., Pearce S, Shonkoff SB. Pinole Creek Watershed Sediment Source Assessment. A technical report of the Regional Watershed Program, San Francisco Estuary Institute (SFEI), Oakland, California. (appendix only). Oakland, CA: San Francisco Estuary Institute; 2005 . Report No.: 316.  (1.29 MB)
Historical Landscape Analysis (full title to come from Robin). San Francisco Estuary Institute; 2005 . Report No.: 396.
Shellmounds report (full title to come from Robin). San Francisco Estuary Institute; 2005 . Report No.: 395.
Grossinger RM, Collins JN, Askevold RA. T-Sheet User Guide: Application of the Historical U.S. Coast Survey Maps to Environmental Management in the San Francisco Bay Area. SF: San Francisco Estuary Institute; 2005 p. 45. Report No.: 427.  (8.6 MB)
McKee LJ ., Pearce S, Shonkoff SB. Pinole Creek Watershed Sediment Source Assessment. A technical report of the Regional Watershed Program, San Francisco Estuary Institute (SFEI), Oakland, California. (report only -- no appendix). Oakland, CA: San Francisco Estuary Institute; 2005 . Report No.: 316.  (4.28 MB)
McKee LJ ., Krottje P. Human influences on nitrogen and phosphorus concentrations in creek and river waters of the Napa and Sonoma watersheds, northern San Francisco Bay, California. Oakland: San Francisco Estuary Institute; 2005 . Report No.: 421.  (1.72 MB)
Oram JJ, McKee LJ ., Leatherbarrow JE. Concentrations and loads of mercury, PCBs, and OC pesticides in the lower Guadalupe River, San Jose,California: Water Years 2003 and 2004. San Francisco Estuary Institute; 2005 p. 80. Report No.: 409.  (1.61 MB)
Hoenicke R, Hayworth J. A Watershed Monitoring Strategy for Napa County. Napa,: San Francisco Estuary Institute; 2005 p. 34. Report No.: 428.  (1.14 MB)
Grossinger RM, Askevold RA, Richard C. State of the Estuary 2005 Conference Abstract. 2005 .  (76.3 KB)
Askevold RA. Interpreting Historical Maps to Reconstruct Past Landscapes in the Santa Clara Valley. 2005 .  (32.97 MB) (32.97 MB)
Associates LPhilip Wil. Trends in Suspended Sediment Input to the San Francisco Bay for Local Tributaries Watersheds. San Francisco Estuary Institute; 2005 .  (7.9 MB)
Grossinger RM, Collins JN, Enright C, Culberson S, Mueller-Solger A. Changing Delta Geometry and Ecology: The Effects of Historical Landscape Modification on Water Quality and Ecosystem Structure in Suisun Marsh and Delta. 2005 .  (727.53 KB)

2004

Collins JN. Summary of the MeHg Panels of the 2004 CalFed Science Conference. Prepared with the advice and review of the Panelists. CalFed Science Conference, 2004. Sacramento; 2004. p. 2.  (55.25 KB)
Pearce S, Grossinger RM. Relative effects of fluvial processes and historical land use on channel morphology in three sub-basins, Napa River basin, California, USA. IAHS, International Association of Hydrological Sciences. 2004;288.  (117.55 KB)
Collins JN. Elkhorn Slough Tidal Marsh Plan: Possible Lessons from the Bay Area Wetland Ecosystem Goals Project (PowerPoint presentation). 2004.  (677 KB)
Grossinger RM. Geography Department Commencement Ceremonies, UC Berkeley, Keynote Address, May 2004: "Notes from Places Past and Future" [Internet]. UC Berkeley; 2004. http://geography.berkeley.edu/LecturesEvents/Commencement04/Commencement04.html (277.08 KB)
Collins JN, Grossinger RM. Synthesis of Scientific Knowledge: for maintaining and improving functioning of the South Bay Ecosystem and Restoring Tidal Salt Marsh and Associated Habitats over the next 50 years at Pond and Pond-Complex Scales. 2004 . Report No.: 308.  (16.01 MB)
Grossinger RM, Striplen CJ, Brewster E, McKee LJ .. Ecological, Geomorphic, and Land Use History of Sulphur Creek Watershed: A component of the watershed management plan for the Sulphur Creek watershed, Napa County, California. Oakland: San Francisco Estuary Institute; 2004 . Report No.: 307.  (12.87 MB)
McKee LJ ., Eads R, Freeman L, Leatherbarrow JE. The concentration and load of PCBs, OC pesticides, and mercury associated with suspended sediments in the lower Guadalupe River, San Jose, California. A Technical Report of the Regional Watershed Program. Oakland, CA: San Francisco Estuary Institute; 2004 . Report No.: 86.  (1.66 MB)
McKee LJ ., Pearce S, Shonkoff SB. San Pedro Creek Watershed Sediment Source Analysis, Volume III: Tributary sediment source assessment. Oakland, CA: San Francisco Estuary Institute; 2004 . Report No.: 87.  (16.74 MB)
Grossinger RM, Collins JN, Striplen CJ. Wetland Habitat Changes in the Rodeo Lagoon Watershed, Golden Gate National Recreation Area, Marin County, CA. Oakland, CA: San Francisco Estuary Institute; 2004 . Report No.: 116.  (13.65 MB)
Collins JN, Pearce S. Analysis of Reference Tidal Channel Plan Form for the Montezuma Wetlands Restoration Project. Oakland, CA: San Francisco Estuary Institute; 2004 . Report No.: 80.  (5.96 MB)
Collins JN, Grosso C. First Annual Report of the Montezuma Wetlands Restoration Project Technical Review Team. Oakland, CA: San Francisco Estuary Institute; 2004 . Report No.: 102.  (4.56 MB)
Collins JN, Stralberg D. Baylands Vegetation Mapping Protocol (Version 1.0). Oakland, CA: San Francisco Estuary Institute; 2004 . Report No.: 304.  (450.49 KB)
Grossinger RM, Striplen CJ, Brewster E, McKee LJ .. Ecological, Geomorphic, and Land Use History of Carneros Creek Watershed: A component of the watershed management plan for the Carneros Creek watershed, Napa County, California. Oakland: San Francisco Estuary Institute; 2004 . Report No.: 70.  (1.15 MB)
McKee LJ ., Striplen CJ, Pearce S. Fluvial Geomorphology, Hydrology, and Riparian Habitat of La Honda Creek Along the Hwy 84 Transportation Corridor, San Mateo County, California. San Francisco Estuary Institute /CA State Univ of Fresno; 2004 . Report No.: 78.  (4.27 MB) (84.28 KB) (157.74 KB) (156.77 KB) (5.18 MB) (9.62 MB) (4.68 MB) (218.87 KB) (3.38 MB) (88.2 KB) (71.37 KB) (19.65 MB) (5.32 MB) (159.61 KB)
Grossinger RM, Baye P. Once and Future Bay: Lessons from History for Revitalizing the Bay. 2004.  (6.28 MB)

2003

Collins JN. Regional Wetlands Monitoring in San Francisco Bay (Transcript). In 2003.  (5.93 KB)
Collins JN, Stralberg D, Siegel S. Bay Area Wetlands Ecosystem Goals Project: Bay Area Wetland Project Map. San Francisco Estuary Institute; 2003.  (5.93 KB)
Collins JN. Coyote Hills Area Habitat Conceptual Planning for 2002-03. San Francisco Estuary Institute; 2003.  (5.85 KB)
Collins JN. Universal Wetland Ecological Features (Graphic). San Francisco Estuary Institute; 2003.  (6.96 KB)
Collins JN, Grosso C, Sutula M, Wittner E, Stralberg D. Ambient Survey of Intertidal Ecological Health and Stressors. 2003.  (1.22 MB)
Collins JN. CRAM: Synopsis of first CRAM Core Team meeting. San Francisco Estuary Institute; 2003. p. 4.  (13.6 KB)
Collins JN. California Rapid Assessment Method (CRAM) - Part 1. San Francisco Estuary Institute; 2003.  (18.12 MB)
McKee LJ . Regional Watershed Program. Oakland, CA: San Francisco Estuary Institute; 2003.  (137.72 KB)
McKee LJ ., Leatherbarrow JE. Sediment and Contaminant Loading from the Guadalupe River: Implications for TMDLs and Mass Budget Models (presented at NorCal SETAC 2003 Conference). The NorCal SETAC 2003 Conference; 2003.  (6.21 MB)
McKee LJ ., Pearce S, O'Connor M, Jones B. Geomorphic Processes and Salmonid Habitat in Sulphur and Carneros Creeks, Napa River Watershed, Napa County California (PowerPoint presentation). San Francisco Estuary Institute; 2003.  (3.17 MB)
Pearce S, Grossinger RM, O'Connor M, McKee LJ .. Contrasting Fluvial Geometric Processes and Historic Change Through Time: Supporting Watershed Management in Tributaries of the Napa River Watershed (poster). 2003.  (233.43 KB)
Grossinger RM, Collins JN, Striplen CJ, Brewster E, Richard C, Burns T, et al.. Physical and Ecological Characteristics of the Historic Baylands of South San Francisco Bay (Poster for the 2003 State of the Estuary Conference). 2003.  (231.58 KB)
Collins JN, Striplen CJ, Brewster E, Richard C, Burns T, Strode E, et al.. Physical and Ecological Characteristics of the Historical Baylands of South San Francisco Bay. 2003.
Grossinger RM, Striplen CJ, Brewster E, Collins LM. Landscape Change in the Napa River Watershed, 1800 - 2002: Implications for the Restoration of In - Stream, Floodplain, and Valley Floor Habitat. The Watershed Sciences CALFED Science Conference, January 16, 2003: San Francisco Estuary Institute; 2003.  (10.13 MB)
Collins JN, Sutula M, Stein E. DRAFT California Rapid Assessment Method for Wetlands v. 2.0 : User's Manual and Scoring Forms. Oakland, CA: San Francisco Estuary Institute; 2003. p. 102.
Collins JN. South and Central Bay Wetlands Projects. 2003.  (25.49 KB)
Collins JN, Didonato J, Baker R, Ackerman H, Wolin F, Kent J. Coyote Hills Wetland Enhancement and Drainage Improvement (Project Summary Outline) [Internet]. San Francisco Estuary Institute, Phillip Williams & Associates; 2003. http://www.sfei.org/wetlands/Current%20Projects/Coyote%20Hils%20Park%20Habitat%20Co%7E000/2%20Project%20Summary%20for%20B%7E000.pdf (22.25 KB)
Collins JN. Sustaining Regional Partnerships for Conservation: Sharing the Future. 2003.  (2.15 MB)
Collins JN. Regional Wetlands Monitoring in San Francisco Bay (Abstract). 2003 .  (5.93 KB)
McKee LJ ., Pearce S, O'Connor M, Jones B. Channel Geomorphology Assessment: A component of the watershed management plan for the Sulphur Creek watershed, Napa County, California. Oakland, CA: San Francisco Estuary Institute; 2003 . Report No.: 68.  (4.64 MB)
Collins JN, Sutula M, Stein E. DRAFT California Rapid Assessment (CRAM) Verification Approach. Oakland, CA: San Francisco Estuary Institute; 2003 p. p. 9. Report No.: 283.
Collins JN. California Rapid Assessment Method (CRAM) - Part 2. San Francisco Estuary Institute; 2003 . Report No.: 285.  (2.79 MB)
Collins JN. Draft Guidelines for Developing the CRAM Metrics. Oakland, CA: San Francisco Estuary Institute; 2003 p. 2. Report No.: 284.  (4.88 KB)
Grossinger RM, Brewster E. A Geographic History of the San Lorenzo Creek Watershed: Landscape Patterns Underlying Human Activities (w / 8.5x11 or 11 x 17 map) [Internet]. Oakland, CA: San Francisco Estuary Institute; 2003 . Report No.: 85. http://www.sfei.org/HEP/reports/SLor_geog_hist_final_w_11x17_map_2.pdfhttp://www.sfei.org/HEP/reports/SLor_geog_hist_final_w_8x11map_2.pdf (8.84 MB) (9.57 MB)
Collins JN, Wittner E, Grosso C. South Bay Updates Modern Baylands Habitat Coverage Bay Area EcoAtlas Information System. Oakland, CA: San Francisco Estuary Institute; 2003 . Report No.: 282.
McKee LJ ., Pearce S, O'Connor M, Jones B. Channel Geomorphology Assessment: A component of the watershed management plan for the Carneros Creek watershed, Napa County, California. Oakland, CA: San Francisco Estuary Institute; 2003 . Report No.: 67.  (4.87 MB)

2002

Connor MS, Montagna PA, Alber M, Doering P. Freshwater inflow: Science, Policy, and Managment. Estuaries. 2002;25:1243-1245.
Greenfield BK, Lewis DB, Hinke JT. Shell damage and salt marsh periwinkles (Littoraria irrorata Say) and resistance to future attacks by blue crabs (Callinectes sapidus Rathbun). American Malacological Bulletin. 2002;17:141-146.  (423.12 KB)
Collins JN. Statement of Need (Wetlands Science Program). 2002. p. 1.
Collins JN. Program Development for the Wetlands Science Program. 2002. p. 1.  (10.39 KB)
Vasey M, Parker T, Callaway J. Tidal Marsh Vegetation. 2002.  (72.85 KB)
McKee LJ ., Wittner E. The National Hydrography Data Set: San Francisco Bay Area. San Francisco Estuary Institute; 2002.  (9.47 MB)
McKee LJ . Water quality modeling: Characterization of nutrients in surface waters and modeling at the watershed scale. University of California at Berkeley: San Francisco Estuary Institute; 2002.  (2.94 MB)
McKee LJ . Estimating sediment related contaminant loads entering San Francisco Bay from the Central Valley: A contribution to Region 2 and Region 5 TMDLs. San Francisco Estuary Institute; 2002.  (996.04 KB)
San Francisco Estuary Institute. Sources, Pathways and Loadings Documents. Oakland, CA: San Francisco Estuary Institute; 2002.  (184.57 KB) (282.92 KB) (2.84 MB) (1.06 MB) (816.18 KB) (343.39 KB) (221.26 KB) (2.53 MB) (1.32 MB) (1.21 MB) (1.25 MB) (598.85 KB)
Davis JA, Collins JN, May M. Sediment Contaminants. 2002.  (172.72 KB)
Collins JN. Management Questions for the Wetlands Science Program. San Francisco Estuary Institute; 2002. p. 1.  (9.04 KB)
Collins JN, Grosso C. Montezuma Wetlands Monitoring Project Technical Review Team (TRT) First Information Package. Oakland, CA: San Francisco Estuary Institute; 2002.  (64.83 KB)
Collins JN. Major Technical Components of the Wetlands Science Program. San Francisco Estuary Institute; 2002. p. 6.  (24.7 KB)
Collins JN. Geographic Scope of the Wetlands Science Program. San Francisco Estuary Institute; 2002. p. 1.  (6.38 KB)
Collins JN. Pacific Estuarine Ecosystem Indicators Research Consortium (PEEIR): Generalized Conceptual Models Wetlands Regional Monitoring Program. San Francisco Estuary Institute; 2002.  (351.13 KB)
Collins JN. Crissy Field Monitoring Technical Review Team (Project Description) [Internet]. San Francisco Estuary Institute; 2002. http://www.sfei.org/wetlands/Current%20Projects/Crissy%20Field%20Monitoring%20Tec%7E000/1%20Crissy%20Final%20Project%20%7E000.pdf (8.54 KB)
Kucera T, Breaux A, Zielinski W. River Otter Protocol. 2002.  (58.68 KB)
Johnston D. Yuma Bat Protocol. 2002.  (36.84 KB)
Collins JN. Management Structure of the Wetlands Science Program. San Francisco Estuary Institute; 2002. p. 10.  (33.86 KB)
TRT M. Montezuma Wetlands Monitoring Project Technical Review Team (TRT) "Kickoff" Meeting Minutes. Oakland, CA: San Francisco Estuary Institute; 2002.  (17.16 KB)
Collins JN. California and the World Ocean 2002 (Abstract for Session on California Coastal Wetlands Issues). Oakland, CA: San Francisco Estuary Institute; 2002.  (8 KB)
Collins JN. Program Origins of the Wetlands Science Program. 2002. p. 1.
McKee LJ . Sediment Transport From The Sacramento/San Joaquin Delta During Large Resuspension Events: Implications For Pollutant Transport To San Francisco Bay. San Francisco Estuary Institute; 2002.
Striplen CJ, DeWeerdt S. Old Science, New Science: Incorporating Traditional Ecological Knowledge into Contemporary Management. 2002.  (817.47 KB)
Padgett-Flohr GE, Jennings MR. Red-Legged Frog Protocol. 2002.  (399.23 KB)
Callaway J, Stuart S. Sediment Protocols. 2002.  (94.08 KB)
Grossinger RM, Dawson A. Sonoma Valley Historical Ecology Project, Phase 1 Final Report. Sonoma County Water Agency and the SF Estuary Project.; 2002 p. 8 pp. plus apps. Report No.: 254.  (31.29 KB)
Collins JN, Sutula M, Stein E, Jones P. California Rapid Assessment Method for Wetlands v. 1.0. San Francisco Estuary Institute; 2002 p. 18. Report No.: 246.
Kucera T, Breauz A, Zielinski W. Data Collection Protocol Montioring River Otter (Lutra [=Lontra] canadensis). Oakland, CAStanislaus, CA: CA State University Stanislaus, U.S Forest Service, San Francisco Bay Regional Water Quality Control Board; 2002 p. 11. Report No.: 241.
San Francisco Estuary Institute. Development of the Wetlands Regional Monitoring Program for the San Francisco Estuary. 2002 .  (1.19 MB)
Vasey M, Callaway J, Parker TV. Data Collection Protocol Tidal Wetland Vegetation. San Francisco, CA: San Francisco State; 2002 p. 13. Report No.: 279.
Collins JN, May M, Smith D, Klohr S, Zaremba K. Data Collection Protocol Distribution, Abundance, and Treatment of Non-indigenous Speicies of Cordgrass in the San Francisco Estuary. Oakland, CA: San Francisco Estuary Institute; 2002 p. 44. Report No.: 247.  (1.18 MB)
Padgett-Flohr GE. Data Collection Protocols Surveying for the Salt Marsh Harvest Mouse [Reithrodontomys raviventris}, California Vole (Microtus califoricus) and other Small Mammals. Fremont, Ca San Jose, Ca: Rana Resources, San Jose State University; 2002 p. 14. Report No.: 275.
Padgett-Flohr GE, Jennings MR. Data Collection Protocol Survey Protocol for the California Red-Legged Frog (Rana aurora draytonii). Fremont, CA: Rana Resources; 2002 p. 15. Report No.: 347.
Siegel S, Callaway J. Data Collection Protocol Sedimentation- Erosion Tables (SET's). San Francisco, CASan Rafael, CA: University of San Francisco, Wetlands and Water Resources; 2002 . Report No.: 244.
Collins JN, Ingram BL, Malamud-Roam K, Malamud-Roam F, Watson E. The Historical Geography and Biogeography of Tidal Salt Marshes (Abstract). San Francisco Estuary Institute; 2002 .  (5.66 KB)
McKee LJ . Measurement of sediment and contaminant loads from the Guadalupe River watershed: sampling and analysis plan. Oakland, CA: San Francisco Estuary Institute; 2002 . Report No.: 64.  (657.31 KB)
McKee LJ ., Hoenicke R, Leatherbarrow JE. Results of the Estuary Interface Pilot Study, 1996-1999, Final Report. (Technical Report of the Sources Pathways and Loading Work Group (SPLWG) of the San Francisco Estuary Regional Monitoring Program for Trace Substances (RMP)). Oakland, CA: San Francisco Estuary Institute; 2002 . Report No.: 50.  (1.66 MB)
Collins JN. San Francisco Estuary Wetlands Regional Monitoring Program Plan: Protocols for Tier 3 (Intensive Monitoring). 2002 . Report No.: 249.
McKee LJ ., DiGennaro B, Yoshiyama R, Swanson C, Northern P, Grosberg R, et al.. Report of Science Advisors: Solano County Natural Community Conservation Plan Habitat Conservation Plan. 2002 . Report No.: 272.  (585.78 KB)
McKee LJ ., Glasner A. Pathogen Occurrence and Analysis in Relation to Water Quality Attainment in San Francisco Bay Area Watersheds. 2002 . Report No.: 128.  (133.07 KB)
Collins JN. Executive Summary: SFEI Component of the Integrated Regional Wetlands Monitoring Pilot Project. San Francisco Estuary Institute; 2002 p. 2. Report No.: 251.  (75.19 KB)
McKee LJ ., Wittner E. Mapping Urbanized and Rural Drainages in the Bay Area: A Tool for Improved Management of Stormwater Contaminants Derived from Small Tributaries. Oakland, CA: San Francisco Estuary Institute; 2002 . Report No.: 133.  (2.1 MB)
Grossinger RM. Assessing Ecological Potential in an Urbanized Coastal Ecosystem: Methods and Findings from Historical Research in the San Francisco Bay Area (Abstract for Southern California Wetlands Recovery Project Conference 2002). 2002 .  (5.8 KB)
Collins JN. Executive Summary 2002 (Wetlands Science Program). San Francisco Estuary Institute; 2002 p. 4. Report No.: 250.  (27.74 KB)
Collins JN. Monitoring the US West Coast: An Assessment of California’s Estuaries and the Pacific Ocean:Spatial Hierarchy and its Rationale. Oakland, CA: San Francisco Estuary Institute; 2002 . Report No.: 120.  (119.38 KB)
Collins JN. San Francisco Estuary Wetalnds Regional Monitoring Program Plan: Version 1, Framework and Protocols. Oakland, CA: San Francisco Estuary Institute; 2002 p. 94. Report No.: 248.  (1.11 MB)
Johnston D. Data Collection Protocol Yuma Bat (Myotis yumanensis). San Jose, CA: H.T Harvey & Associates; 2002 p. 7. Report No.: 259.
Collins JN. Summary of Crissy Field Monitoring Elements [Internet]. San Francisco Estuary Institute; 2002 . http://www.sfei.org/wetlands/Current%20Projects/Crissy%20Field%20Monitoring%20Tec%7E000/2%20Summary%20of%20Crissy%20Fie%7E000.pdf (9.75 KB)
McKee LJ ., Foe C. Estimation of Total Mercury Fluxes Entering San Francisco Bay from the Sacramento and San Joaquin River Watersheds (Technical Memo). Oakland, CA: San Francisco Estuary Institute; 2002 . Report No.: 260.  (1007.25 KB)
McKee LJ ., Grossinger RM, Pearce S, O'Connor M. Napa River Sediment TMDL Baseline Study: Geomorphic Processes and Habitat form and function in Soda Creek. Oakland, CA: San Francisco Estuary Institute; 2002 . Report No.: 63.  (4.2 MB)
Collins JN. Mission Statement for the Wetlands Science Program. 2002. p. 1.  (4.31 KB)

2001

Grossinger RM. Documenting Local Landscape Change: The Bay Area Historical Ecology Project. In: Egan D, Howell E. The Historical Ecology Handbook: A Restorationist's Guide to Reference Ecosystems. Washington D.C.: Island Press; 2001.
McKee LJ ., Wittner E, Leatherbarrow JE, Lucas V, Grossinger RM. Building a regionally consistent base map for the Bay Area: The National Hydrography Data Set. Abstracts of the 5th Biannual State of the Estuary Conference – San Francisco Estuary: Achievements, trends and the future. Palace of the Fine Arts theatre, October 9, 10, and 11, 2001; 2001. p. pp 108.
McKee LJ ., Hoenicke R, Leatherbarrow JE. Contaminant contributions from the Guadalupe River and Coyote Creek watersheds to the lower South San Francisco Bay. Abstracts of the 5th Biannual State of the Estuary Conference – San Francisco Estuary: Achievements, trends and the future. Palace of the Fine Arts theatre, October 9, 10, and 11, 2001.; 2001.
McKee LJ ., Eyre B, Hossain S, Pepperell P. Influence of climate, geology, and humans on spatial and temporal variability in nutrient geochemistry in the sub-tropical Richmond River catchment, Australia. Marine and Freshwater Research. 2001;52:235-248.
Collins JN. Coyote Hills Historic Baylands. 2001.  (3.44 MB)
McKee LJ . Sediment Loads Transported from The Delta During Large Resuspension Events. San Francisco Estuary Institute; 2001.
Collins JN. Program Strategy for the Wetlands Science Program. 2001.  (25.54 KB)
Collins JN. Pacific Estuarine Ecosystem Indicators Research Consortium (PEEIR): PEEIR Project Description. San Francisco Estuary Institue; 2001.  (5.71 KB)
McKee LJ . The Challenges in Designing an Effective Regional Watershed Sampling Program. San Francisco Estuary Institute; 2001.  (1.56 MB)
San Francisco Estuary Institute. Wetlands Work at SFEI. 2001.  (2.91 MB)
Collins JN. Wetlands Regional Monitoring Program Prospectus. 2001. p. 9.
San Francisco Estuary Institute. Introduction to Wetland Monitoring Protocols. 2001.  (13.03 KB)
Collins JN, Jones P, Lipton D, Bonnefil R, Levine J, Hicks J. Montezuma Wetlands Monitoring Project Technical Review Team (TRT) Charter. Oakland, CA: San Francisco Estuary Institute; 2001.  (24.56 KB)
Grossinger RM. Resurvey. Bay Nature; 2001.  (857.15 KB)
McKee LJ . Determining Loads and Trends in Small Tributaries. San Francisco Estuary Institute; 2001.  (77.09 KB)
McKee LJ . The use of the Simple Model for informing environmental science and management: Is this the right tool for your needs? (Presentation at the Bay Area Stormwater Management Agencies Association (BASMAA) modelling forum, San Francisco Regional Water Quality. 2001.  (1.86 MB)
Grossinger RM. In Search of a Lost Laguna. Bay Nature; 2001.  (938.36 KB)
Collins JN. Estuarine Wetlands Restoration in the San Francisco Bay Area: the Roles of Not-for-Profits (Transcript). San Francisco Estuary Institute; 2001. p. 8.  (31.07 KB)
Collins JN. Historic Drainage Patterns of the Alameda Watershed (Transcript). San Francisco Estuary Institute; 2001.  (821.71 KB)
Collins JN. SFEI Wetlands Program Strategy. Oakland, CA: San Francisco Estuary Institute; 2001. p. 6.
Grossinger RM. Sand. Bay Nature; 2001.
Collins JN. Wetlands Regional Monitoring Program. WRMP Program Plan 2001. 2001.
Collins JN. Mosquito Landscapes - Part 2 (Transcript). San Francisco Estuary Institute; 2001.  (8.69 KB)
Collins JN. Possible Geomorphic Effects of Invasive Spartina alterniflora in the San Francisco Estuary. San Francisco Estuary Institute; 2001.  (5.61 MB)
Collins JN. An Overview of the Expected Physical Relationships between the Intertidal and Shallow Bay Zones of the San Francisco Estuary (Transcript). Richmond, CA: San Francisco Estuary Institute; 2001.  (695.63 KB)
San Francisco Estuary Institute. Monitoring the US West Coast: An Assessment of California’s Estuaries and the Pacific Ocean: Year 2002 Wetlands Assessment. Oakland, CA: San Francisco Estuary Institute; 2001.  (548.57 KB)
Collins JN. Wetlands Regional Monitoring Program. Wetlands Management Questions for the San Francisco Estuary. 2001.
Grossinger RM, Brewster E. Land Use Timeline for Crow Canyon and the San Lorenzo Creek Watershed. Alameda Countywide Clean Water Program; 2001 p. 6 pp. Report No.: 352.  (21.63 KB)
Collins JN. Restoration of the San Francisco Region: the Role of NGOs (Abstract). Richmond, CA: San Francisco, CA; 2001 .  (4.94 KB)
Collins LM, Grossinger RM, McKee LJ ., Riley A, Collins JN. Wildcat Creek Watershed: A Scientific Study of Physical Processes and Land Use Effects [Internet]. Richmond, CA: San Francisco Estuary Institute; 2001 . Report No.: 363. http://www.sfei.org/wildcatcreeklandscapehistory (31.51 MB) (98.29 MB) (2.11 MB) (16.39 MB) (107 MB) (3.19 MB) (14.02 MB)
Collins JN, Sutula M, Wittner E, Vasey M, Parker T, Callaway J. QAPP for environmental monitoring and assessment program West Coast Pilot 2002 Intertidal Assessment: California Intensification. Oakland, CA: San Francisco Estuary Institute; 2001 . Report No.: 234.  (489.07 KB)
McKee LJ . Sediment loads transported from the Delta: Implications for management of pollutants of concern. San Francisco Estuary Institute; 2001 . Report No.: 231.  (1.3 MB)
Collins JN. Wetlands Regional Monitoring Program. Draft Data Collection Protocols. 2001 . Report No.: 365.
State of Ohio Environmental Protection Agency. Ohio Rapid Assessment Method for Wetlands v. 5.0 Users Manual and Scoring Forms. Ohio: State of Ohio Environmental Protection Agency; 2001 p. 107.
Collins JN, Jones P. Bay Area Wetlands Regional Monitoring Program (Abstract, SOE 2001). Richmond, CA: San Francisco Estuary Institute; 2001 .  (6.46 KB)
Collins JN, May M. Protocols to Monitor and Assess the Distribution, Abundance, and Treatment of Invasive Spartina in the San Francisco Estuary. 2001 . Report No.: 364.
Collins JN. Wetlands Regional Monitoring Program. Comparison of Indicators and Methods for Past Wetlands Restoration Projects. 2001 . Report No.: 362.
Collins JN. Will Knowing Tidal Elevation Help Explain Variations in Sediment Chemistry and Microbial Processes Among Sample Plots in Tidal Marshes?. San Francisco Estuary Institute; 2001 p. 6. Report No.: 290.  (47.14 KB)
Collins JN, May M. Basic Regional Spatial Analysis of Non - Indigenous Invasive Species (NIS) Spartina Invasions in the San Francisco Estuary. Richmond, Ca: San Francisco Estuary Institute; 2001 . Report No.: 372.  (429.92 KB)
DeWeerdt S. Resurrection (Article in New Scientist). 2001.  (314.5 KB)

2000

Collins JN, Schwarzbach SE, Luoma SN, Yee D, Davis JA. Mercury and tidal wetland restoration. In Chapter 6 in Brown, L. (ed.). DRAFT CALFED Whitepaper on: Ecological Processes in Tidal Wetlands of the Sacramento-San Joaquin Estuary and Their Implications for Proposed Restoration Efforts of the Ecosystem Restoration Program. 2000.
Connor M, Sobsey M, Novotny V, Humphrey H, Dickson K, Depinto J, et al.. A framework for comprehensive, integrated, watershed monitoring in New York City. Environmental Monitoring and Assessment. 2000;62:147-167.
McKee LJ ., Eyre B, Hossain S. Intra - and inter-annual export of nitrogen and phosphorus in the sub-tropical Richmond River catchment, Australia. Hydrological Processes. 2000;14:1787-1809.
McKee LJ ., Eyre B, Hossain S. Transport and retention of nitrogen and phosphorus in the sub-tropical Richmond River estuary, Australia - a budget approach. Biogeochemistry. 2000;50:241-278.
McKee LJ ., Davis JA. The Transport of contaminants to San Francisco Bay by stormwater. 2000 pp. 5-7. Report No.: 344.
Davis JA, McKee LJ ., Leatherbarrow JE, Daum T. Contaminant Loads from Stormwater to Coastal Waters in the San Francisco Bay Region: Comparison to Other Pathways and Recommended Approach for Future Evaluation. Richmond, CA: San Francisco Estuary Institute; 2000 . Report No.: 342.  (4.87 MB) (2.58 MB)
Hoenicke R, Leatherbarrow JE. The Estuary Interface Pilot Study: 1998 Progress Report. San Francisco Estuary Institute; 2000 . Report No.: 49.
McKee LJ ., Brewster E, Dale R, Cornwall, Hunter RC, Lawton R, et al.. Summary of existing information in the watershed of Sonoma Valley in relation to the Sonoma Creek Watershed Restoration Study and recommendations on how to proceed. San Francisco Estuary Institute; 2000 . Report No.: 345.
Grossinger RM. The Way It Was: Mythology, Memory, and Maps of the Early San Francisco Bay Area (Abstract for American Society for Environmental History Conference, March 2000). San Francisco Estuary Institute; 2000 . Report No.: 269.  (8.69 KB)

1999

Grossinger RM, Collins JN, Brewster E, Der Z. What did this place used to look like, anyway? An Example of Historical Ecology Research from the San Francisco Bay Area, CA (Abstract for Society for Ecological Restoration Conference 1999). San Francisco Estuary Institute; 1999.  (7.58 KB)
Grossinger RM. Seeing Time: A Historical Approach to Restoration. Ecological Restoration. 1999;17:251-2.
Collins JN. The Environment of the East Bay Shoreline When Europeans First Arrived (Transcript). a Conference held a Mountain Light Studio, Emeryville, 25 July 1999: San Francisco Estuary Institute; 1999.  (14.19 KB)
Collins JN. Effects of the Goals Project (Transcript). San Francisco Estuary Institute; 1999.  (17.13 KB)
Collins JN. Mosquito Landscapes - Part 1 (Transcript). Richmond, CA: San Francisco Estuary Institute; 1999.  (14.58 KB)
Collins JN. Evolution and Natural Maintenance of Tidal Marshes in San Pablo Bay (Transcript). San Francisco Estuary Institute; 1999.  (5.14 KB)
Collins JN, Brewster E, Grossinger RM. Conceptual models of freshwater influences on tidal marsh form and function, with an historical perspective. City of San Jose, CA: Department of Environmental Services; 1999 p. 237 pp. Report No.: 327.
Leidy RA. Robert A. Leidy Fish Survey 1992-1998 Bay Area Stream Fishes. 1999 .  (1.37 MB)
San Francisco Estuary Institute. Baylands Ecosystem Habitat Goals Report. 1999 .  (7.11 MB)
Monroe M, Olofson PR, Collins JN, Grossinger RM, Haltiner J, Wilcox C. Baylands Ecosystem Habitat Goals. U. S. Environmental Protection Agency, San Francisco, Calif./S.F. Bay Regional Water Quality Control Board, Oakland, Calif.; 1999 p. 328. Report No.: 330.  (7.11 MB)

1998

San Francisco Estuary Institute. Bay Area Watersheds Science Approach. San Francisco Estuary Institute; 1998.  (330.72 KB)
Collins JN. The Baylands: Past, Present, and Change (Abstract). San Francisco Estuary Institute; 1998.  (6.46 KB)
Collins JN. Comments on the Intersection of Land, Water, and People (Transcript). San Francisco Estuary Institute; 1998.  (5.69 KB)
Grossinger RM, Collins JN, Hoenicke R, Collins LM. A Bay Area Watersheds Science Approach (Abstract). San Francisco Estuary Institute; 1998.  (4.4 KB)
Collins JN. Uncertainty in Biodiversity Planning: Lessons from the Bay Area (Transcript). San Francisco Estuary Institute; 1998.  (21.2 KB)
Collins JN. Mosquito Landscapes (Abstract). Richmond, CA: San Francisco Estuary Institute; 1998.  (4.48 KB)
Collins JN. The Watershed and the Baylands (Transcript). San Francisco Estuary Institute; 1998.  (15.94 KB)
San Francisco Estuary Institute. EcoAtlas Baylands Maps [Internet]. 1998. ecoatlas
Collins JN, Der Z, Grossinger RM. Spatial Analysis of the Baylands Ecosystem. 1998 p. 120. Report No.: 320.
Collins JN. Bay Area Wetlands Ecosystem Goals Project: Key Baylands Species. San Francisco Estuary Institute; 1998 . Report No.: 121.  (25.65 KB)
Collins JN, Der Z, Wong C, Grossinger RM. Cartographic analysis of historical and modern baylands boundaries for Marin County, California. Marin County Community Develpment Agency; 1998 p. 88 pp. Report No.: 229.
Collins JN. Bay Area Wetlands Ecosystem Goals Project: Draft Functional Correspondence between Past and Present Key Habitats. San Francisco Estuary Institute; 1998 . Report No.: 123.  (23.63 KB)
Collins JN, May M. Contamination of Tidal Wetlands. Richmond CA; 1998 . Report No.: 228.
Collins JN, Grossinger RM. Spatial analysis of historical, modern, and future wetlands landscapes of the Bay Area. Bay Area Wetlands Ecosystem Goals Project. 1998 . Report No.: 319.
Collins JN. BAYLANDS ECOSYSTEM HABITAT GOALS: REPORT ON THE PROCESS TO SET REGIONAL GOALS FOR WETLANDS RESTORATION IN THE SAN FRANCISCO BAY AREA. Richmond, CA: San Francisco Estuary Institute; 1998 . Report No.: 227.  (3.12 KB)
Collins JN. Bay Area Wetlands Ecosystem Goals Project: Key Baylands Habitats. San Francisco Estuary Institute; 1998 . Report No.: 122.  (35.49 KB)

1997

Collins JN, Culberson SD, Foin TC, Garcia EJ, Gill RE. Recovery strategies for the California clapper rail (Rallus longirostris obsoletus) in the heavily urbanized San Francisco estuarine ecosystem. Landscape and Urban Planning. 1997;38:229-243.
Cohen AN, Cole BE. Red tide in Berkeley Marina raises concern for toxic blooms in Central Bay [Internet]. 1997. pp. 11-13. http://www.sfei.org/bioinvasions/Reports/1998RedTide.pdf (632.84 KB)
Grossinger RM. Sausal: Discovering the Early Bay Area Landscape. 1997.
Collins JN. Brief Overview of Historical Suisun Tidal Marsh Form and Ecological Function with Notes on Restoration Science (Transcript). San Francisco Estuary Institute; 1997.  (20.23 KB)
Collins JN. Watershed Conference (Transcript). San Francisco Estuary Institute; 1997.  (9.82 KB)
Collins JN. Watershed Management in the Bay Area (Transcript). San Francisco Estuary Institute; 1997.  (20.09 KB)
McKee LJ ., Eyre B, Hossain S. Historical trends in water quality - Historic data on water quality. 1997 .

1996

Grossinger RM, Collins JN, Brewster E, Der Z. Geography of Wetlands in the San Francisco Estuary (Transcript). San Francisco Estuary Institute; 1996.  (20.54 KB)
Collins JN. What are Data? (Transcript). San Francisco Estuary Institute; 1996. p. 17.  (8.99 KB)
Collins JN. What is a Tidal Marsh?. San Francisco Estuary Institute; 1996. p. 1.  (8.99 KB)
San Francisco Estuary Institute, Gahagan & Bryant Associates. Tidal wetland restoration potential using dredged sediments: a methodology for assessment with examples from the North Bay Area. 1996 . Report No.: 305.  (8.27 MB)

1995

Collins JN, Monroe M, Wilcox C, Olofson P. Bay Area Wetlands Ecosystem Goals Project: Focus Team Orientation Package. Richmond, CA: San Francisco Estuary Institute; 1995.  (60.58 KB)
Collins JN. A Very Brief Overview on The Histories of Some Marin County Creeks (Transcript). San Francisco Estuary Institute; 1995.  (15.94 KB)
Collins JN. Bay Area Wetlands Ecosystem Goals Project: Focus Team Orientation Talking Points. Richmond, CA: San Francisco Estuary Institute; 1995.  (4.43 KB)
Collins JN. Bay Area Wetlands Ecosystem Goals Project: Starting Considerations. San Francisco Estuary Institute; 1995.  (10.27 KB)
Grossinger RM. Historical Evidence of Freshwater Effects on the Plan Form of Tidal Marshlands in the Golden Gate Estuary. Masters Thesis. [Santa Cruz]: University of California; 1995. p. 130 pp.

1994

Fiorillo JT. Implementation Manual for the San Leandro Creek Watershed Awareness Program, 1993-1994. Richmond, Ca: San Francisco Estuary Institute; 1994 p. 75. Report No.: 177.

1987

Davis JA, Richardson CJ. Natural and artificial wetland ecosystems - ecological opportunities and limitations. In: K.R. R, Smith WH. Aquatic Plants for Water Treatment and Resource Recovery. Gainesville, FL: University of Florida; 1987.