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2019
Yee, D.; Gilbreath, A. N.; McKee, L. J. .; Davis, J. A. 2019. Conceptual Model to Support PCB Management and Monitoring in the San Leandro Bay Priority Margin Unit - Final Report. SFEI Contribution No. 928. San Francisco Estuary Institute: Richmond, CA.

The goal of RMP PCB special studies over the next few years is to inform the review and possible revision of the PCB TMDL and the reissuance of the Municipal Regional Permit for Stormwater, both of which are tentatively scheduled to occur in 2020. Conceptual model development for a set of four representative priority margin units will provide a foundation for establishing an effective and efficient monitoring plan to track responses to load reductions, and will also help guide planning of management actions. The Emeryville Crescent was the first PMU to be studied in 2015-2016. The San Leandro Bay PMU is second (2016-2018), Steinberger Slough in San Carlos is third (2018), and Richmond Harbor will be fourth (2018-2019).

This document is Phase Three of a report on the conceptual model for San Leandro Bay. A Phase One report (Yee et al. 2017) presented analyses of watershed loading, initial retention, and long-term fate, including results of sediment sampling in 2016. A Phase Two data report (Davis et al. 2017) documented the methods, quality assurance, and all of the results of the 2016 field study. This Phase Three report is the final report that incorporates all of the results of the 2016 field study, and includes additional discussion of the potential influence of contaminated sites in the
watershed, the results of passive sampling by Stanford researchers and a comparative analysis of long-term fate in San Leandro Bay and the Emeryville Crescent, a section on bioaccumulation, and a concluding section with answers to the management questions that were the impetus for the work.

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Sun, J.; Davis, J. A.; Stewart, R.; Palace, V. 2019. Selenium in White Sturgeon from North San Francisco Bay: The 2015-2017 Sturgeon Derby Study. SFEI Contribution No. 897. San Francisco Estuary Institute: Richmond, CA.

This report presents the findings from a study evaluating selenium concentrations in white sturgeon (Acipenser transmontanus) tissues collected during the 2015-2017 Sturgeon Derby events in North San Francisco Bay. The goal of this study was to investigate the distribution of selenium among sturgeon tissues to inform the toxicological and regulatory interpretation of selenium measured in non-lethally collected tissues, including muscle plugs and fin rays. This technical report provides documentation of the study and presents its major findings.

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2018
Grieb, T.; Roy, S.; Rath, J.; Stewart, R.; Sun, J.; Davis, J. A. 2018. North Bay Selenium Monitoring Design. SFEI Contribution No. 921. San Francisco Estuary Institute : Richmond, CA.
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2016
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Trowbridge, P. R.; Davis, J. A.; Mumley, T.; Taberski, K.; Feger, N.; Valiela, L.; Ervin, J.; Arsem, N.; Olivieri, A.; Carroll, P.; et al. 2016. The Regional Monitoring Program for Water Quality in San Francisco Bay, California, USA: Science in support of managing water quality. Regional Studies in Marine Science 4.

The Regional Monitoring Program for Water Quality in San Francisco Bay (RMP) is a novel partnership between regulatory agencies and the regulated community to provide the scientific foundation to manage water quality in the largest Pacific estuary in the Americas. The RMP monitors water quality, sediment quality and bioaccumulation of priority pollutants in fish, bivalves and birds. To improve monitoring measurements or the interpretation of data, the RMP also regularly funds special studies. The success of the RMP stems from collaborative governance, clear objectives, and long-term institutional and monetary commitments. Over the past 22 years, high quality data and special studies from the RMP have guided dozens of important decisions about Bay water quality management. Moreover, the governing structure and the collaborative nature of the RMP have created an environment that allowed it to stay relevant as new issues emerged. With diverse participation, a foundation in scientific principles and a continual commitment to adaptation, the RMP is a model water quality monitoring program. This paper describes the characteristics of the RMP that have allowed it to grow and adapt over two decades and some of the ways in which it has influenced water quality management decisions for this important ecosystem.

Hunt, J.; Trowbridge, P.; Yee, D.; Franz, A.; Davis, J. 2016. Sampling and Analysis Plan for 2016 RMP Status and Trends Bird Egg Monitoring. SFEI Contribution No. 827. San Francisco Estuary Institute: Richmond, CA. p 31 pp.
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2015
Trowbridge, P.; Davis, J. A.; Wilson, R. 2015. Charter: Regional Monitoring Program for Water Quality in San Francisco Bay. SFEI Contribution No. 750. San Francisco Estuary Institute: Richmond, Calif.

The overarching goal of the RMP is to collect data and communicate information about water quality in San Francisco Bay in support of management decisions. The RMP was created in 1993 through Regional Board Resolution No. 92-043 that directed the Executive Officer to implement a Regional Monitoring Plan in collaboration with permitted dischargers pursuant to California Water Code, Sections 13267, 13383, 13268, and 13385. The goal was to replace individual receiving water monitoring requirements for dischargers with a comprehensive Regional Monitoring Program.

The Program is guided by a Memorandum of Understanding (MOU) between the Regional Board and SFEI, first approved in 1996 and amended at various times since (see Appendix C of this Charter). Section VIII of the MOU states the roles and responsibilities of the Regional Board and SFEI in the implementation of the Program. Participating dischargers pay fees to the Program to comply with discharge permit requirements. The cost allocation schedule for Participants is described in Appendix B. The RMP provides an open forum for a wide range of Participant Groups and other Interested Parties to discuss contaminant issues, prioritize science needs, and monitor potential impacts of discharges on the Bay.

In support of the overarching goal described above, the following guiding principles define the intentions and expectations of RMP Participants. Implementation of the RMP will:

  • Develop sound scientific information on water quality in the Bay;
  • Prioritize funding decisions through collaborative discussions;
  • Conduct decision-making in a transparent manner that consistently represents the diversity of RMP Participant interests;
  • Utilize external science advisors for guidance and peer review;
  • Maintain and make publicly available the data collected by the Program;
  • Enhance public awareness and support by regularly communicating the status and trends of water quality in the Bay; and
  • Coordinate with other monitoring and scientific studies in the Bay-Delta region to ensure efficiency.
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2014
Davis, J. A. 2014. 2014 Regional Monitoring Program Update. SFEI Contribution No. 728. San Francisco Estuary Institute: Richmond, CA.
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Robinson, A.; Slotton, D. G.; Lowe, S.; Davis, J. A. 2014. North Bay Mercury Biosentinel Project (December 2014 Report). SFEI Contribution No. 738. San Francisco Estuary Institute: Richmond, CA.
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Sutton, R.; Sedlak, M.; Davis, J. A. 2014. Polybrominated Diphenyl Ethers (PBDEs) in San Francisco Bay: A Summary of Occurrence and Trends. SFEI Contribution No. 713. San Francisco Estuary Institute: Richmond, CA. p 62.
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2012
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2011
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2008
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Oram, J. J.; McKee, L. J. .; Davis, J. A.; Sedlak, M.; Yee, D. 2008. Sources, Pathways and Loadings Workgroup: Five-Year Workplan (2008-12). SFEI Contribution No. 567. San Francisco Estuary Institute: Oakland.
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Connor, M. S.; Davis, J. A. 2008. The State of San Francisco Bay: Water Quality. National Water Quality Monitoring Conference.
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2007
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Oram, J. J.; McKee, L. J. .; Davis, J. A.; Hetzel, F. 2007. Polychlorinated biphenyls (PCBs) in San Francisco Bay. Environmental Research 105, 67-86 . SFEI Contribution No. 526.
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Davis, J. A.; Connor, M. S.; Flegal, A. R.; Conaway, C. H. 2007. Sources, transport, fate and toxicity of pollutants in the San Francisco Bay estuary. Environmental Research : A Multidisciplinary Journal of Environmental Sciences, Ecology and Public Health 105, 1-4.
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2006
Davis, J. A.; SFEI. 2006. 2006 Pulse of the Estuary: Monitoring and Managing Water Quality in the San Francisco Estuary. SFEI Contribution No. 517. San Francisco Estuary Institute: Oakland, CA. p 82.
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Oram, J. J.; Greenfield, B. K.; Davis, J. A.; David, N.; Leatherbarrow, J. E. 2006. Organochlorine Pesticide Fate in San Francisco Bay. SFEI Contribution No. 433. San Francisco Estuary Institute: Oakland, CA. p 48.
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2004
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Davis, J. A.; Lowe, S.; Anderson, B.; Hunt, J.; Thompson, B. 2004. Conceptual Framework and Rationale for the Exposure and Effects Pilot Study. SFEI Contribution No. 317. San Francisco Estuary Institute: Oakland.
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Connor, M.; Yee, D.; Davis, J. A.; Werme, C. 2004. Dioxins in San Francisco Bay: Conceptual Model/Impairment Assessment. SFEI Contribution No. 309. San Francisco Estuary Institute: Oakland. p 60.
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Davis, J. A. 2004. The Long-Term Fate of PCBs in San Francisco Bay. Environmental Toxicology and Chemistry 23, 2396-2409.
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Greenfield, B. K.; Davis, J. A. 2004. A PAH Fate Model for San Francisco Bay. Chemosphere . SFEI Contribution No. 114.
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