Title: Biblio RTF Export
Author: Biblio 7.x

McKee, L.; Peterson, D.; Braud, A.; Foley, M.; Dusterhoff, S.; Lowe, J.; King, A.; Davis, J. 2023. San Francisco Bay Sediment Modeling and Monitoring Workplan.  SFEI Contribution No. 1100. San Francisco Estuary Institute: Richmond, CA.
This document was prepared with guidance gained through two RMP Sediment Workgroup workshops held in late 2022 and early 2023. Given the variety of participants involved, this Workplan encompasses interests beyond San Francisco Bay RMP funders. We thank the attendees for their contributions. 
In 2020, the Sediment Workgroup (SedWG) of the Regional Monitoring Program for Water Quality in San Francisco Bay (RMP) completed a Sediment Monitoring and Modeling Strategy (SMMS) which laid out a conceptual level series of data and information gaps and generally recommended the use of both empirical data collection and modeling tools to answer initial high priority management questions (McKee et al., 2020). At the time, the SMMS promoted the use of surrogates such as time-continuous turbidity measurements for cross-section flux modeling within the Bay without an understanding of existing Bay hydrodynamic models, their strengths, weaknesses, and potential uses for understanding coupled Bay-mudflat-marsh processes. Since then, the Wetland Regional Monitoring Program (WRMP, www.wrmp.org) has generally promoted the use of coupling monitoring and modeling techniques to inform wetlands sediment management decisions. In addition, he completion of the Sediment for Survival report (a RMPEPA funded collaboration) and the further development of sediment conceptual models has also advanced the need for a coupled dynamic modeling and monitoring program that has the capacity to explore more complex management questions (Dusterhoff et al., 2021; SFEI, 2023). Such a program will take time to develop, but will be more cost-efficient and adaptable and allow for more timely answers to pressing questions. 

Wang, M.; Kinyua, J.; Jiang, T.; Sedlak, M.; McKee, L. J.  .; Fadness, R.; Sutton, R.; Park, J. - S. 2022. Suspect Screening and Chemical Profile Analysis of Storm-Water Runoff Following 2017 Wildfires in Northern California. Environmental Toxicology and Chemistry . SFEI Contribution No. 1089.
The combustion of structures and household materials as well as firefighting during wildfires lead to releases of potentially hazardous chemicals directly into the landscape. Subsequent storm-water runoff events can transport wildfire-related contaminants to downstream receiving waters, where they may pose water quality concerns. To evaluate the environmental hazards of northern California fires on the types of contaminants in storm water discharging to San Francisco Bay and the coastal marine environment, we analyzed storm water collected after the northern California wildfires (October 2017) using a nontargeted analytical (NTA) approach. Liquid chromatography quadrupole time-of-flight mass spectrometric analysis was completed on storm-water samples (n?=?20) collected from Napa County (impacted by the Atlas and Nuns fires), the city of Santa Rosa, and Sonoma County (Nuns and Tubbs fires) during storm events that occurred in November 2017 and January 2018. The NTA approach enabled us to establish profiles of contaminants based on peak intensities and chemical categories found in the storm-water samples and to prioritize significant chemicals within these profiles possibly attributed to the wildfire. The results demonstrated the presence of a wide range of contaminants in the storm water, including surfactants, per- and polyfluoroalkyl substances, and chemicals from consumer and personal care products. Homologs of polyethylene glycol were found to be the major contributor to the contaminants, followed by other widely used surfactants. Nonylphenol ethoxylates, typically used as surfactants, were detected and were much higher in samples collected after Storm Event 1 relative to Storm Event 2. The present study provides a comprehensive approach for examining wildfire-impacted storm-water contamination of related contaminants, of which we found many with potential ecological risk. Environ Toxicol Chem 2022;00:1?14. © 2022 SETAC

Pearce, S.; McKee, L. 2020. Summary of Water Year 2017 precipitation, discharge, and sediment conditions at selected locations in Arroyo de la Laguna watershed, with a focus on Arroyo Mocho.  SFEI Contribution No. 912. San Francisco Estuary Institute: Richmond, CA.
This report summarizes the precipitation, discharge, and sediment conditions observed from October 1, 2016 to September 30th, 2017 (Water Year (WY) 2017) in the Arroyo de la Laguna watershed, with a focus on the Arroyo Mocho watershed. This information was collected by the Zone 7 Water Agency to support operation and maintenance of their flood control facilities. Additionally, this and similar information collected in WY 2018 and 2019 will be utilized to update the Arroyo Mocho watershed sediment budget (Pearce et al, 2020).

McKee, L. J.  .; Gilbreath, A. N.; Hunt, J. A.; Wu, J.; Yee, D.; Davis, J. A. 2019. Small Tributaries Pollutants of Concern Reconnaissance Monitoring: Loads and Yields-based Prioritization Methodology Pilot Study.  SFEI Contribution No. 817. San Francisco Estuary Institute: Richmond, CA.

Schoellhamer, D.; McKee, L.; Pearce, S.; Kauhanen, P.; Salomon, M.; Dusterhoff, S.; Grenier, L.; Marineau, M.; Trowbridge, P. 2018. Sediment Supply to San Francisco Bay.  SFEI Contribution No. 842. San Francisco Estuary Institute : Richmond, CA.

Melwani, A.; Yee, D.; McKee, L.; Gilbreath, A.; Trowbridge, P.; Davis, J. 2018. Statistical Methods Development and Sampling Design Optimization to Support Trends Analysis for Loads of Polychlorinated Biphenyls from the Guadalupe River in San Jose, California, USA.  SFEI Contribution No. 876. Applied Marine Sciences: Livermore, CA.

Yee, D.; Davis, J. A.; Gilbreath, A. N.; McKee, L. J. 2016. Simple Mass Budget Model to Evaluate Long Term PCB Fate in the Emeryville Crescent Sub-embayment.

McKee, L. J.  .; Gilbreath, A. N.; Hunt, J. A.; Wu, J.; Yee, D. 2016. Sources, Pathways and Loadings: Multi-Year Synthesis with a Focus on PCBs and Hg.  SFEI Contribution No. 773.

Pearce, S. A. 2015. Sediment Supply, deposition, and transport in the Flood Control Facilities of Arroyo Mocho and Arroyo Las Positas from 2006-2014.  Gilbreath, A. N., McKee, L. J., Eds..  SFEI Contribution No. 771. San Francisco Estuary Institue: Richmond, CA.

Gilbreath, A. N.; Hunt, J. A.; McKee, L. J. 2014. San Francisco State University Site 1 Vegetated Infiltration Basin (Case Study Site and Technical Reports).  SFEI Contribution No. 794.

Gilbreath, A. N.; Hunt, J. A.; McKee, L. J. 2014. San Francisco State University Site 3 Basin and Swale System (Case Study Site and Technical Reports).  SFEI Contribution No. 795.

Gilbreath, A. N.; Hunt, J. A.; McKee, L. J. 2014. Sunset Circle Vegetated Swale and Infiltration System (Case Study Site and Technical Reports).  SFEI Contribution No. 796.

Barnard, P. L.; Schoellhamer, D. H.; Jaffe, B. E.; McKee, L. J.  . 2013. Sediment transport in the San Francisco Bay Coastal System: An  overview. Marine Geology Special Issue: A multi-discipline approach for understanding sediment transport and geomorphic evolution in an  estuarine-coastal system.

McKee, L. J.  .; Lewicki, M.; Schoellhamer, D. H.; Ganju, N. K. 2012. San Francisco Bay sediment transport: Comparison of sediment supply to San Francisco Bay from coastal and Sacramento-San Joaquin watersheds.

Gluchowski, D. C.; Pearce, S.; McKee, L. J.  . 2012. Sediment Characteristics of Managed Flood Control Channels in Southern San Francisco Bay.

Pearce, S.; Bigelow, P.; McKee, L. J.  .; Gilbreath, A. N. 2009. A Sediment Budget for Two Reaches of Alameda Creek: support for flood control channel management.

McKee, L. J.  .; Gilbreath, A. N.; Looker, R.; Mangarella, P.; Yee, D.; Leatherbarrow, J. E.; David, N. 2008. San Francisco Bay Mercury Loads: Scientific information development and management response. Harmonizing River Catchment and Estuary.

Bigelow, P.; Pearce, S.; McKee, L. J.  .; Gilbreath, A. N. 2008. A Sediment Budget for Two Reaches of Alameda Creek.  SFEI Contribution No. 550. San Francisco Estuary Institute.

Oram, J. J.; McKee, L. J.  .; Davis, J. A.; Sedlak, M.; Yee, D. 2008. Sources, Pathways and Loadings Workgroup: Five-Year Workplan (2008-12).  SFEI Contribution No. 567. San Francisco Estuary Institute: Oakland.

Gilbreath, A. N.; McKee, L. J.  . 2008. Spatiotemporal variation of turbidity in Alameda Creek and selected tributaries: August thru December 2007.  SFEI Contribution No. 547. San Francisco Estuary Institute.

McKee, L. J.  .; Pearce, S.; Gilbreath, A. N. 2007. Stream Inventory Report for La Honda Creek: Prepared for the Midpeninsula Regional Open Space District.  SFEI Contribution No. 529. San Francisco Estuary Institute.

Beller, E. E.; Grossinger, R. M.; Askevold, R. A.; Pearce, S.; Collins, J. N.; McKee, L. J.  .; Hoenicke, R.; Gardner, S. 2007. Streams, Wetlands, and Woodlands in the Napa Valley: New Perspectives from Old Maps.

McKee, L. J.  . 2005. Sources, Pathways, and Loadings: 5-Year Work Plan (2005-2009).  SFEI Contribution No. 406. San Francisco Estuary Institute. p 25.

McKee, L. J.  .; Pearce, S.; Shonkoff, S. B. 2004. San Pedro Creek Watershed Sediment Source Analysis, Volume III: Tributary sediment source assessment.  SFEI Contribution No. 87. San Francisco Estuary Institute: Oakland, CA.

McKee, L. J.  .; Leatherbarrow, J. E. 2003. Sediment and Contaminant Loading from the Guadalupe River: Implications for TMDLs and Mass Budget Models (presented at NorCal SETAC 2003 Conference).

McKee, L. J.  .; Davis, J. A.; Ganju, N.; Shellenbarger, G.; Schoellhamer, D. H. 2003. Sediment Dynamics Drive Contaminant Dynamics.

McKee, L. J.  . 2002. Sediment Transport From The Sacramento/San Joaquin Delta During Large Resuspension Events: Implications For Pollutant Transport To San Francisco Bay.

McKee, L. J.  . 2001. Sediment Loads Transported from The Delta During Large Resuspension Events.

McKee, L. J.  . 2001. Sediment loads transported from the Delta: Implications for management of pollutants of concern.  SFEI Contribution No. 231. San Francisco Estuary Institute.

McKee, L. J.  .; Brewster, E.; Dale, R.; Cornwall,; Hunter, R. C.; Lawton, R.; Grossinger, R. M. 2000. Summary of existing information in the watershed of Sonoma Valley in relation to the Sonoma Creek Watershed Restoration Study and recommendations on how to proceed.  SFEI Contribution No. 345. San Francisco Estuary Institute.