Library
Our library features many hundreds of entries.
To search among them, click "Search" below to pull down options, including filtering by document type, author, year, and keyword.
Find these options under "Show only items where." Or you can also sort by author, title, type, and year clicking the headings below.
2013.
Apparent Tolerance of Common Tern (Sterna hirundo) Embryos to a Pentabrominated Diphenyl Ether Mixture (DE-71). USGS-Patuxent Wildlife Research Center: Beltsville, Maryland.
2011. (1.57 MB)Evaluation of Benthic Assessment Methodology in Southern California Bays and San Francisco Bay. Southern California Coastal Water Research Project: Westminster. CA.
2004. (1.44 MB)Simulating Sediment Flux Through the Golden Gate. Prepared for Regional Monitoring Program for Water Quality in San Francisco Bay (RMP). SFEI Contribution No. 1033. San Francisco Estuary Institute: Richmond, CA.
. 2021. (8.39 MB)2006 RMP Annual Monitoring Results. SFEI Contribution No. 542. San Francisco Estuary Institute: Oakland.
. 2007. (19.02 MB) . 2006.
2007 RMP Annual Monitoring Results. SFEI Contribution No. 572. San Francisco Estuary Institute: Oakland, CA.
. 2007. (2.2 MB)2012 Annual Monitoring Results. San Francisco Estuary Institute: Richmond, CA.
. 2014. (7.38 MB)Historical Ecology of the McCormack-Williamson Tract: A Landscape Framework for Restoration. SFEI Contribution No. 674. Aquatic Science Center / San Francisco Estuary: Richmond, CA.
. 2012. Adaptation Pathways: San Leandro Operational Landscape Unit. SFEI Contribution No. 1077. San Francisco Estuary Institute: Richmond, CA.
2022. (14.72 MB)Baylands Resilience Framework for San Francisco Bay: Wildlife Support. SFEI Contribution No. 1115. San Francisco Estuary Institute: Richmond, CA.
2023. (10.03 MB)Regional Analysis of Potential Beneficial Use Locations. Conducted for the San Francisco Bay Regional Dredged Material Management Plan. Prepared by the San Francisco Estuary Institute for the US Army Corps of Engineers, San Francisco District. SFEI Contribution No. 1178. San Francisco Estuary Institute: Richmond, CA.
2023. (12.17 MB)The Screening of Problems Relating to the San Francisco Bay_Delta. SFEI Contribution No. 138. San Francisco Estuary Insitute: Richmond, CA. p 77.
1987. Monitoring of Toxic Contaminants in the San Francisco Bay-Delta: A Critical Review, Emphasizing Spatial and Temporal Trend Monitoring. SFEI Contribution No. 153. AHI: Richmond, CA. p 244.
1988. (12.94 MB)Monitoring of Toxic Contaminants in the San Francisco Bay-Delta: A Critical Review. SFEI Contribution No. 152.
1988. Executive Summary of the Monitoring of Toxic Contaminants in the San Francisco Bay-Delta: A Crtical Review. SFEI Contribution No. 151. San Francisco Estuary Institue: Richmond, CA. p 14.
1988. Executive Summary of Toxic Contaminats in the San Francisco Bay - Delta and Their Possible Biological Effects. SFEI Contribution No. 139. San Francisco Estuary Institute: Richmond, CA. p 15.
1987. Investigations of Sediment Elutriate Toxicity at Three Estuarine Stations in San Francisco Bay, California. SFEI Contribution No. 374. San Francisco Estuary Institue: Richmond, CA.
2000. (502.17 KB)RMP Sediment Study 2009-2010 Determining Causes of Sediment Toxicity in the San Francisco Estuary. SFEI Contribution No. 626. UC-Davis, Marine Pollutions Studies Laboratory.
2011. (1.53 MB)Sediment Toxicity Identification Evaluations San Francisco Bay RMP for Trace Substances - Progress Report. SFEI Contribution No. 46. San Francisco Estuary Institute: Richmond, CA.
2001. (434.71 KB)RMP Sediment TIE Study 2007-2008: Using Toxicity Identification Evaluation (TIE)Methods to Investigate Causes of Sediment Toxicity to Amphipods. SFEI Contribution No. 561. San Francisco Estuary Institute: Oakland, CA.
2008. (1.23 MB)Toxic Contaminants in the San Francisco Bay-Delta and their Possible Biological Effects. SFEI Contribution No. 145. Aquatic Habitat Institute: Richmond, CA. p 472.
1987. (19.02 MB)Petaluma River Watershed Contemporary Riparian Condition Assessment. Petaluma River Watershed Contemporary Riparian Condition Assessment. SFEI Contribution No. 1160. San Francisco Estuary Institute: Richmond, CA.
2024. (7.81 MB)McCosker Creek Restoration and Public Access Project: Alder Creek Daylighting Additional Monitoring Elements - Final Report. SFEI Contribution No. 1157. San Francisco Estuary Institute: Richmond, CA.
2023. (8.07 MB)Sycamore Alluvial Woodland Restoration and Enhancement Suitability Study. In collaboration with Alameda County Flood Control and Water Conservation District, Zone 7. Prepared for the US Environmental Protection Agency’s Water Quality Improvement Fund. SFEI Contribution No. 1128. San Francisco Estuary Institute: Richmond, CA.
2023. (83.26 MB) (10.1 MB)The “Sycamore Alluvial Woodland Restoration and Enhancement Suitability Study” addresses distribution and regeneration patterns and restoration strategies of sycamore alluvial woodland (SAW) habitat, a unique and relatively rare native vegetation community adapted to California’s intermittent rivers and streams. The report was produced by SFEI and H. T. Harvey & Associates, as part of the US EPA Water Quality Improvement Fund Preparing for the Storm grant, led by Zone 7 Water Agency.
Translating Sediment Science Into Action: Documenting Beneficial Sediment Reuse. SFEI Contribution No. 1124. San Francisco Estuary Institute: Richmond, CA.
2023. (14.54 MB)The Preparing for the Storm project, led by Zone 7 Water Agency (Zone 7) and funded by the US Environmental Protection Agency (EPA) Water Quality Improvement Fund, aims to develop science-based plans, strengthen existing and new partnerships, and pilot new methodologies for tackling these issues surrounding coarse sediment. As a task within this larger project, this report describes four projects in the East Bay that serve as case studies for beneficial reuse of sediment. Each example highlights a project with sediment that could be reused (in lieu of landfilling) or a project that needs additional sediment and could benefit from deliveries of sediment that normally would not have been beneficially reused.
Sediment Supply, deposition, and transport in the Flood Control Facilities of Arroyo Mocho and Arroyo Las Positas from 2006-2014. . SFEI Contribution No. 771. San Francisco Estuary Institue: Richmond, CA.
2015. (61.71 MB)Towards a Coarse Sediment Strategy for the Bay Area. SFEI Contribution No. 1032. San Francisco Estuary Institute: Richmond, CA.
2021. (6.11 MB) (11.71 MB)Historic and current regional management of watersheds and channels for water supply and flood control across the San Francisco Bay Area has cut off much of the coarse sediment that was historically delivered to the Bay. Here we define coarse sediment as having grain sizes larger than 0.0625 mm, which includes sand, gravel and even cobble, as opposed to fine sediment that includes clay, mud and silt. Future projections indicate that sediment supply will not meet the demand from extant and restored tidal marshes to keep up with sea level rise.
The US EPA Water Quality Improvement Fund Preparing for the Storm grant has funded the Zone 7
Water Agency, the San Francisco Estuary Institute and the San Francisco Bay Joint Venture to support
the future development of a successful regional coarse sediment reuse strategy. Development of
such a strategy requires an understanding of logistical and regulatory hurdles and identification of key
strategies for breaking down barriers. One potential solution for meeting the sediment demand along
the Bay margin is to utilize coarse sediment that is removed from flood control channels by public
agencies. To-date, very little of this sediment that is removed is beneficially reused for restoration
along the Bay shoreline. The current economic and regulatory framework around sediment removal
presents many challenges, barriers and lack of incentives for agencies to reuse their sediment.
This document represents a step forward towards beneficially reusing coarse flood control channel sediment by outlining reuse challenges, and identifying incentives for participation and potential solutions.
Relative effects of fluvial processes and historical land use on channel morphology in three sub-basins, Napa River basin, California, USA. IAHS, International Association of Hydrological Sciences 288.
2004. (117.55 KB)Summary of Water Year 2017 precipitation, discharge, and sediment conditions at selected locations in Arroyo de la Laguna watershed, with a focus on Arroyo Mocho. SFEI Contribution No. 912. San Francisco Estuary Institute: Richmond, CA.
2020. (1.36 MB)This report summarizes the precipitation, discharge, and sediment conditions observed from October 1, 2016 to September 30th, 2017 (Water Year (WY) 2017) in the Arroyo de la Laguna watershed, with a focus on the Arroyo Mocho watershed. This information was collected by the Zone 7 Water Agency to support operation and maintenance of their flood control facilities. Additionally, this and similar information collected in WY 2018 and 2019 will be utilized to update the Arroyo Mocho watershed sediment budget (Pearce et al, 2020).
Alameda Creek Bulk Sediment Study Technical Memorandum. San Francisco Estuary Institute: Oakland,Ca.
2009. (2.68 MB)Blurred lines: Multiple freshwater and marine algal toxins at the land-sea interface of San Francisco Bay, California. Harmful Algae 73, 138-147 . SFEI Contribution No. 875.
2018. An Examination of the Benefits and Trade-offs of Visitation and Recreational Use of Public Open Space. SFEI Contribution No. 1020. San Francisco Estuary Institute: Richmond, CA.
2021. (9.33 MB)E-Bikes and Open Space: The Current State of Research and Management Recommendations. SFEI Contribution No. 1064. San Francisco Estuary Institute: Richmond, CA.
2021. (2.99 MB)Biophilia beyond the Building: Applying the Tools of Urban Biodiversity Planning to Create Biophilic Cities. Sustainability 13 (5).
2021. (7.42 MB)In response to the widely recognized negative impacts of urbanization on biodiversity, many cities are reimagining urban design to provide better biodiversity support. Some cities have developed urban biodiversity plans, primarily focused on improving biodiversity support and ecosystem function within the built environment through habitat restoration and other types of urban greening projects. The biophilic cities movement seeks to reframe nature as essential infrastructure for cities, seamlessly integrating city and nature to provide abundant, accessible nature for all residents and corresponding health and well-being outcomes. Urban biodiversity planning and biophilic cities have significant synergies in their goals and the means necessary to achieve them. In this paper, we identify three key ways by which the urban biodiversity planning process can support biophilic cities objectives: engaging the local community; identifying science-based, quantitative goals; and setting priorities for action. Urban biodiversity planning provides evidence-based guidance, tools, and techniques needed to design locally appropriate, pragmatic habitat enhancements that support biodiversity, ecological health, and human health and well-being. Developing these multi-functional, multi-benefit strategies that increase the abundance of biodiverse nature in cities has the potential at the same time to deepen and enrich our biophilic experience in daily life.
Wildlife Habitat and Water Quality Enhancement Opportunities at Castlewood Country Club. SFEI Contribution No. 1003. San Francisco Estuary Institute: Richmond, CA.
2020. (52.69 MB) (2.68 MB)Meeting human and ecological needs within San Francisco Bay’s watersheds is increasingly challenged by flooding, water quality degradation, and habitat loss, exacerbated by intensified urbanization and climate change. Addressing these challenges requires implementing multi-benefit strategies through new partnerships and increased coordination across the region’s diverse landscapes. Actions to improve water quality and enhance habitat for biodiversity in our highly developed and managed landscapes can help the region as a whole to build resilience to withstand current pressures and future change. The EPA-funded project, “Preparing for the Storm,” aims to address these challenges at the site- and landscape-scale through studies and implementation projects in the Livermore-Amador Valley. As part of this larger project, this technical report presents a synthesis of water quality and habitat improvement opportunities for a golf course of Castlewood Country Club.
Cyanobacterial Populations in San Francisco Bay. SFEI Contribution No. 42. San Francisco Estuary Institute: Richmond, CA.
1999. (39.11 KB)Data Collection Protocols Surveying for the Salt Marsh Harvest Mouse [Reithrodontomys raviventris}, California Vole (Microtus califoricus) and other Small Mammals. SFEI Contribution No. 275. Rana Resources, San Jose State University: Fremont, Ca San Jose, Ca. p 14.
2002. Data Collection Protocol Survey Protocol for the California Red-Legged Frog (Rana aurora draytonii). SFEI Contribution No. 347. Rana Resources: Fremont, CA. p 15.
2002. Assessment of emerging polar organic pollutants linked to contaminant pathways within an urban estuary using non-targeted analysis. SFEI Contribution No. 1107. Environmental Sciences: Processes and Impacts.
2021. A comprehensive, non-targeted analysis of polar organic pollutants using high resolution/accurate mass (HR/AM) mass spectrometry approaches has been applied to water samples from San Francisco (SF) Bay, a major urban estuary on the western coast of the United States, to assess occurrence of emerging contaminants and inform future monitoring and management activities. Polar Organic Chemical Integrative Samplers (POCIS) were deployed selectively to evaluate the influence of three contaminant pathways: urban stormwater runoff (San Leandro Bay), wastewater effluent (Coyote Creek, Lower South Bay), and agricultural runoff (Napa River). Grab samples were collected before and after deployment of the passive samplers to provide a quantitative snapshot of contaminants for comparison. Composite samples of wastewater effluent (24 hours) were also collected from several wastewater dischargers. Samples were analyzed using liquid-chromatography coupled to high resolution mass spectrometry. Resulting data were analyzed using a customized workflow designed for high-fidelity detection, prioritization, identification, and semi-quantitation of detected molecular features. Approximately 6350 compounds were detected in the combined data set, with 424 of those compounds tentatively identified through high quality spectral library match scores. Compounds identified included ethoxylated surfactants, pesticide and pharmaceutical transformation products, polymer additives, and rubber vulcanization agents. Compounds identified in samples were reflective of the apparent sources and pathways of organic pollutant inputs, with stormwater-influenced samples dominated by additive chemicals likely derived from plastics and vehicle tires, as well as ethoxylated surfactants.
Identification and emission factors of molecular tracers in organic aerosols from biomass burning: Part 3. Grasses. Applied Geochemistry 21 (6) . SFEI Contribution No. 491.
2006. Polychlorinated Biphenyls in Northern San Francisco Estuary Refinery Effluents. SFEI Contribution No. 510.
2002. Closing in on unidentified contaminants. pp p. 18-19 . SFEI Contribution No. 274.
2000. Pyrethroid Insecticides: An Analysis of Use Patterns, Distributions, Potential Toxicity and Fate in the Sacramento-San Joaquin Delta and Central Valley. SFEI Contribution No. 415. San Francisco Estuary Institute.
2005. (2.99 MB)Emerging Contaminants: Endocrine Disrupting Chemicals (EDCs). RMP Regional Monitoring News, San Francisco Estuary Regional Monitoring Program for Trace Substances 10, p.1-11 . SFEI Contribution No. 502.
2005. (736.14 KB)RMP detective work: Identifying new organic contaminants in the Estuary. p 7 . SFEI Contribution No. 273.
2002. Surveillance monitoring for new organic contaminants in the San Francisco Estuary. pp 5-6 . SFEI Contribution No. 368.
2003. 2006.
Carbamates, Diazinon, Imidacloprid and Piperonyl Butoxide in Sediments by Liquid Chromatography/Mass Spectrometry-Mass Spectrometry. Analytical Chemistry . SFEI Contribution No. 443.
2006. Workshop Report: The Effects of Polycyclic Aromatic Hydrocarbons (PAH) in San Francisco Bay Sediments. SFEI Contribution No. 518. San Francisco Estuary Institute.
2006. (11.38 MB)Identification and evaluation of previously unknown organic contaminants in the San Francisco Estuary (1999-2001). SFEI Contribution No. 75. San Francisco Estuary Institute: Oakland, CA.
2003. (1.33 MB)Sources of organic aerosol particulate matter in Malaysia during haze episode. Chemosphere . SFEI Contribution No. 468.
2003. Polar aromatic biomarkers in the miocene Maritza-East Lignite, Bulgaria. Organic Geo-chemistry . SFEI Contribution No. 476.
2002. Geology, geochemistry and biomaker evaluation of lafie-Obi Coal Benue through, Nigeria. Fuel Journal 81, 219-233 . SFEI Contribution No. 473.
2002. Pelagic Organism Decline. SFEI Contribution No. 511.
2005. Organic Tracers from Wild Fire Residues in Soils and Rain/River Wash-Out. Water, Air and Soil Pollution 137, p.203-233 . SFEI Contribution No. 479.
2002. Adapting an ambient monitoring program to the challenge of managing emerging pollutants in the San Francisco estuary. Environmental Research 105, 132-144 . SFEI Contribution No. 493.
2007. (741.96 KB)A Forecast Model of Long-Term PCB Fate in San Francisco Bay. SFEI: Oakland, CA. p 52.
2008. (3.56 MB)Organochlorine Pesticide Fate in San Francisco Bay. SFEI Contribution No. 433. San Francisco Estuary Institute: Oakland, CA. p 48.
2006. (1.93 MB)Polychlorinated biphenyls (PCBs) in San Francisco Bay. Environmental Research 105, 67-86 . SFEI Contribution No. 526.
2007. (1 MB)DRAFT REPORT: A Model of Long-Term PCB Fate and Transport in San Francisco Bay, CA. SFEI Contribution No. 388. San Francisco Estuary Institute: Oakland, CA.
2005. A Mass Budget of Polybrominated Diphenyl Ethers in San Francisco Bay, CA. Environment International.
2008. (708.37 KB)Concentrations and Loads of Mercury, PCBs and PBDEs in the Lower Guadalupe River, San Jose, California: Water Years 2003, 2004, and 2005. SFEI Contribution No. 424. San Francisco Estuary Institute: Oakland.
2006. (11.98 MB)Evaluation of Episodic Suspended Sediment Transport in San Francisco Bay, California through Remote Sensing. SFEI Contribution No. 670. SFEI: Richmond, CA. p 18.
2012. (1.56 MB)Sources, Pathways and Loadings Workgroup: Five-Year Workplan (2008-12). SFEI Contribution No. 567. San Francisco Estuary Institute: Oakland.
2008. Concentrations and loads of mercury, PCBs, and OC pesticides in the lower Guadalupe River, San Jose,California: Water Years 2003 and 2004. SFEI Contribution No. 409. San Francisco Estuary Institute. p 80.
2005. (1.61 MB)Dredging Impacts on Food-Web Bioaccumulation of DDTs in San Francisco Bay, CA. SFEI Contribution No. 418. San Francisco Estuary Institute: Oakland, CA.
2006. (912.15 KB)Gradient-based edge detection and feature classification of satellite images of the Southern California Bight. Remote Sensing of the Environment. Remote Sensing of the Environment. Vol. 112.
2008. The slow recovery of the San Francisco Estuary from the legacy of organochlorine pesticides. Environmental Pollution . SFEI Contribution No. 488.
2007. (969.52 KB)A Model of Long-Term PCB Fate in San Francisco Bay. San Francisco Estuary Institute: Oakland.
2008. (3.82 MB)Evaluation of Turbidity and Turbidity Related Effects on the Biota of the San Francisco Bay-Delta Estuary. SFEI Contribution No. 169. San Francisco Estuary Institute: Richmond, CA. p 84.
1991. (10.03 MB)Status and Assessment of Selected Monitoring Programs in the San Francisco Esturary. SFEI Contribution No. 172. San Francisco Estuary Institute: Richmond, Ca. p 128.
1992. Hydrodynamic and Water Quality Model Calibration and Application in San Francisco Bay. SFEI Contribution No. 913. San Francisco Estuary Institute : Richmond, CA.
2018. (32.2 MB)Characterizing and quantifying nutrient sources, sinks and transformations in the Delta: synthesis, modeling, and recommendations for monitoring. SFEI Contribution No. 785. San Francisco Estuary Institute: Richmond, CA.
2015. (2.39 MB) (101.95 KB) (2.58 MB) (1.52 MB) (115.37 KB) (8.97 MB) (36.31 MB)Nutrient Moored Sensor Program: Year 1 Progress Update. SFEI: Richmond, CA.
2014. (6.61 MB)