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Bioaccumulation of contaminants by bivalve molluscs in the vicinity of municipal wastewater discharges to San Francisco Bay: Wet season results, 1991/1992. SFEI Contribution No. 170. Aquatic Habitat Institute: Richmond, CA.
1992. Research Recommendations for the San Francisco Estuary: Understanding the Ecosystem. SFEI Contribution No. 181. San Francisco Estuary Institue: Richmond, Ca. p 49.
1994. Towards an Optimal Sampling Design for the RMP. SFEI Contribution No. 6. San Francisco Estuary Institute: Richmond, CA.
1994. Bioaccumulation of Contaminants by Transplanted Bivalves in the San Francisco Estuary: Status and Trends. SFEI Contribution No. 191. San Francisco Estuary Institute: Richmond, CA. p 80.
1996. Bioaccumulation of contaminants by transplanted bivalves in the San Francisco Estuary: A summary of status and trends with emphasis on Local Effects Monitoring Programs. SFEI Contribution No. 11. (Bay Area Dischargers Association) San Francisco Estuary Institute: Richmond, CA. pp 171-175.
1997. General guidelines for using the sediment quality triad. Mar. Poll. Bull 34, 368-372 . SFEI Contribution No. 198.
1997. Relationship Between Sediment Toxicity and Contamination in San Francisco Bay. SFEI Contribution No. 27. San Francisco Estuary Institute: Oakland, CA. pp 285-309.
1997. Atlas of Sediment Contamination, Toxicity, and Benthic Assemblages in San Francisco Bay. SFEI Contribution No. 38. San Francisco Estuary Institute: Richmond, CA.
1999. Impacts of Nonindigenous Species on Subtidal Benthic Assemblages in the San Francisco Estuary. SFEI Contribution No. 329. p 16.
1999. 1999.
Recommendations for Improvement of RMP Sediment Monitoring. San Francisco Estuary Institute: Richmond, CA.
1999. 
Regional Monitoring in San Francisco Bay: A Summary of Key Issues. SFEI Contribution No. 36.
1999. Relationship Between Sediment Toxicity and Contamination in San Francisco Bay (Abstract). Marine Environmental Research 285-309 . SFEI Contribution No. 332.
1999. Relationships Between Sediment Toxicity and Contamination in San Francisco Bay. Marine Environmental Research 48, 285-309 . SFEI Contribution No. 27.
1999. Sediment Conditions near Wastewater Discharges in San Francisco Bay. San Francisco Estuary Institute: Oakland, CA.
1999. 2000.
An overview of contaminant-related issues identified by monitoring in San Francisco Bay. Environ. Mon. Assess. 64, 409-419 . SFEI Contribution No. 350.
2000. Results of the Benthic Pilot Study 1994 - 1997, Part 1. SFEI Contribution No. 39. San Francisco Estuary Institute: Richmond, CA.
2000. 
Causes of Sediment Toxicity to Mytilus galloprovincialis in San Francisco Bay, California. Archive of Environmental Contamination Toxicology 45, 486-491 . SFEI Contribution No. 296.
2003. CISNet San Pablo Bay Network of Environmental Stress Indicators; Benthic Microfauna. SFEI Contribution No. 299. San Francisco Estuary Institute: Oakland, CA.
2003. Estuarine and scalar patterns of invasion in the soft-bottom benthic communities of the San Francisco Estuary. Biological Invasions 5, 85-102 . SFEI Contribution No. 292.
2003. Summary of 10 years of sediment toxicity monitoring for the San Francisco Estuary RMP. SFEI Contribution No. 281. San Francisco Estuary Institute.
2003. 
Assessment of macrobenthos resonse to sediment contamination in the San Francisco Estuary, USA. Environmental Toxicology and Chemistry 23 . SFEI Contribution No. 60.
2004. 
Assessment of Macrobenthos Response to Sediment Contamination in the San Francisco Estuary (published in Environmental Toxicology and Chemistry). Environmental Toxicology and Chemistry 23, 2178.
2004. Conceptual Framework and Rationale for the Exposure and Effects Pilot Study. SFEI Contribution No. 317. San Francisco Estuary Institute: Oakland.
2004. 
Development of Environmental Indicators of the Condition of San Francisco Estuary. SFEI Contribution No. 113. San Francisco Estuary Institute: Oakland.
2004. 
Evaluation of Benthic Assessment Methodology in Southern California Bays and San Francisco Bay. Southern California Coastal Water Research Project: Westminster. CA.
2004. 
Re-design Process of the San Francisco Estuary Regional Monitoring Program for Trace Substances (RMP). SFEI Contribution No. 109. San Francisco Estuary Institute: Oakland, CA.
2004. 
Re-design Process of the San Francisco Estuary Regional Monitoring Program for Trace Substances (RMP) Status & Trends Monitoring Component for Water and Sediment. SFEI Contribution No. 507. San Francisco Estuary Institute: Oakland, CA.
2005. 
Spatial Patterns of Sediment Contaminant Mixtures in San Francisco Bay. SFEI Contribution No. 450.
2005. Biological Effects of Anthropogenic Contaminants in the San Francisco Estuary. Environmental Research 105, 156-174 . SFEI Contribution No. 495.
2007. 
Patterns and trends in sediment toxicity in the San Francisco Estuary. Environmental Research 105 (1), 145-155 . SFEI Contribution No. 496.
2007. Patterns and trends in sediment toxicity in the San Francisco Estuary. Environmental Research 105, 145-155.
2007. 
The Influence of Chemical and Physical Factors on Macrobenthos in the San Francisco Estuary. SFEI Contribution No. 543.
2008. 
The level of agreement among experts applying best professional judgment to assess the condition of benthic infaunal communities. Ecological Indicators: Integrating, Monitoring, Assessment and Management 8, 389-394.
2008. 
2008.
Sediment Quality Assessments in the San Francisco Estuary. SFEI Contribution No. 574. San Francisco Estuary Institute: Oakland, Ca.
2008. 
Calibration and evaluation of five indicators of benthic community condition in two California bay and estuary habitats. Marine Pollution Bulletin 59 (1-3), 5-13.
2009. 
Estimated Sediment Contaminant Concentrations Associated with Biological Impacts at San Diego Bay Cleanup Sites. SFEI Contribution No. 584. San Francisco Estuary Institute: Oakland, Ca.
2009. 
Habitat-Related Benthic Macrofaunal Assemblages of Bays and Estuaries of the Western United States. Integrated Environmental Assessment and Management 8 (4), 638-648.
2010. 
Low levels of agreement among experts using best professional judgment to assess benthic condition in the San Francisco Estuary and Delta. Ecological Indicators 12 (1), 167-173 . SFEI Contribution No. 636.
2011. 
Benthic macrofaunal assemblages of the San Francisco Estuary and Delta, USA. Environmental Monitoring Assessment.
2013. 