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Collins, J. N. 2007. CRAM Evaluation of Wetland Conditions. SFEI Contribution No. 544. Elk Grove, California. p 15.
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Collins, J. N. 1998. Bay Area Wetlands Ecosystem Goals Project: Key Baylands Habitats. SFEI Contribution No. 122. San Francisco Estuary Institute.
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Collins, J. N.; Brewster, E.; Grossinger, R. M. 1999. Conceptual models of freshwater influences on tidal marsh form and function, with an historical perspective. SFEI Contribution No. 327. Department of Environmental Services: City of San Jose, CA. p 237 pp.
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Josh Collins; Lowe, S. 2016. Framework to coordinate water quality improvement and wildlife habitat conservation to protect California streams, wetlands, and riparian areas.

Project funded by an USEPA Wetland Program Development Grant (Region 9) #99T05901: Framework for Coordinated Assessment of CA Wildlife Habitat and Aquatic Resource Areas

. SFEI Contribution No. 776. San Francisco Estuary Institute: Richmond, CA. p 89.

The emergence of comparable landscape approaches to wildlife conservation and water quality improvement through federal and California state regulatory and management programs provides an opportunity for their coordination to better protect California’s aquatic resources, especially streams, wetlands, and riparian areas. Such coordination is patently desirable.  A framework has been developed to help coordinate restoration and compensatory mitigation across policies governing wildlife conservation and water quality in the landscape context. The framework is based on the Wetland and Riparian Area Monitoring Plan (WRAMP) of the California Wetland Monitoring Workgroup (CWMW) of the Water Quality Monitoring Council. The framework presented in this memorandum is a version of the standard WRAMP framework. It only differs from the standard framework to better accommodate wildlife conservation planning, assessment and reporting. To distinguish this version from the standard version, it is termed the 'WRAMP for wildlife'.

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Cohen, A. N. 2001. An Introduction to the San Francisco Estuary Third Edition. San Francisco Estuary Project, Oakland CA, Save The Bay, Oakland CA and San Francisco Estuary Institute, Richmond CA: Oakland, Ca. Vol. Third Edit.
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Cohen, A. N.; Byers, J.; Cordell, J.; Dumbauld, B.; Fukuyama, A.; Kohn, A.; Li, K.; Mumford, T.; Radashevsky, V.; Sewell, A.; et al. 2001. Report of the Washington State Exotics Expedition 2000. SFEI Contribution No. 355. Nearshore Habitat Program, Washington State Department of Natural Resources: Olympia WA.
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Cohen, A. N.; Minchin, D.; Gollasch, S.; Olenin, S. 2006. Characterizing vectors of marine invasions. In Marine Bioinvasions: Ecology, Conservation and Management Perspectives. Rilov, G., Crooks, J., Eds.. Marine Bioinvasions: Ecology, Conservation and Management Perspectives. Springer: Heidelberg, Germany.
Cohen, A. N.; Weinstein, A. 2001. The Potential Distribution of Chinese Mitten Crabs (Eriocheir sinensis) in selected waters of the Western United States with U.S. Bureau of Reclamation Facilities. SFEI Contribution No. 353. United States Department of the Interior, Bureau of Reclamation, Mid-Pacific Region and the Technical Service Center. Vol. 21.
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Cohen, A. N. 2001. Case Study 3.16: Transfer of pathogens and other species via oyster culture. Wittenberg, R., Cock, M. J. W., Eds.. United Nations Global Invasive Species Program. CAB International: Wallingford, Oxon, UK. p p 92.
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Cohen, A. N. 1997. Damming the Bay. Switzer Fellowship Network 5, 1,4.
Cohen, A. N. 1998. Biological invasions and opportunities for their regulation on the west coast of the United States. Proc. Eighth Int'l Zebra Mussel and Aquatic Nuisance Species Conf..
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Cohen, A. N.; Williams, E. H. 2002. Marine Exotic Species in the Caribbean: A Progress Report. University of Puerto Rico/Isla Magueyes Laboratory, La Parguera, Puerto Rico.
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Cohen, A. N. 1998. Monitoring for Non-indigenous Organisms. SFEI Contribution No. 385. San Francisco Estuary Institute: Oakland, CA.
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Cohen, A. N.; Schaeffer, K.; McGourty, K.; Cosentino-Manning, N.; De La Cruz, S. E. Wainwri; Elliot, M.; Allen, S. 2007. Introduction for Report on the Subtidal Habitats and Associated Biological Taxa in San Francisco Bay. In Report on the Subtidal Habitats and Associated Biological Taxa in San Francisco Bay. Report on the Subtidal Habitats and Associated Biological Taxa in San Francisco Bay. NOAA National Marine Fisheries Service. p 35.
Cohen, A. N. 1998. Biological invasions in the San Francisco Estuary. In Marine and Aquatic Nonindigenous Species in California: An Assessment of Current Status and Research Needs. Olin, P. G., Cassell, J. L., Eds.. Marine and Aquatic Nonindigenous Species in California: An Assessment of Current Status and Research Needs. California Sea Grant College System, University of California: La Jolla, CA. pp 7-8.
Cohen, A. N.; Gollasch, S.; Galil, B. S. 2006. Bridging Divides: Maritime Canals as Invasion Corridors. Monographiae Biologicae 83. Kluwer Academic Publishing: Dordrecht, The Netherlands.
Cohen, A. N. 1995. Place Invaders. Energy and Resources News 4, 1-3.
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Cohen, A. N. 1996. Biological invasions of the San Francisco Bay and Delta. Summary of comments. In U. S. Fish and Wildlife Service Directorate Meeting. U. S. Fish and Wildlife Service Directorate Meeting. Ogunquit ME, June 12, 1996.
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Cohen, A. N. 1996. Environmental Review and Mitigation of a Water Supply Project in California. A report for the Japanese Ministry of Construction, Tokyo.
Cohen, A. N.; McGann, M.; Sloan, D. 1996. Documenting the intorduction of estuarine foraminifers: a San Francisco Bay Study. Ann. Mtg., Geological Society of America, Denver, CO, Oct. 1996 (abstract).
Cohen, A. N. 2001. Impacts from the Asian clam Potamocorbula amurensis. In National Management Plan. National Management Plan. National Invasive Species Council: Washington DC.
Cohen, A. N. 1994. Storming the Bay. Terrain 24, 4,7.
Cohen, A. N. 2004. An Exotic Species Detection Program for Puget Sound. SFEI Contribution No. 380. San Francisco Estuary Institute: Oakland.
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Cohen, A. N. 1997. The San Francisco Estuary: A model system for invasions research. San Francisco Estuary Institute: Seattle, WA (abstract).
Cohen, A. N.; Zabin, C. J. 2009. Oyster shells as vectors for exotic species. Journal of Shellfish Research 28 (1), 163-167 . SFEI Contribution No. 709.
Cohen, A. N. 2005. A review of Zebra Mussels' Environmental Requirements. Resources, C. A. Department, Ed.. SFEI Contribution No. 420. San Francisco Estuary Institute: Sacramento, CA.
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Cohen, A. N. 1996. Stopping ballast water invaders. Native Species Network 1, 1.
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Cohen, A. N. 2000. Weeding the garden. In Preserving Wildlife: An International Perspective. Michael, M. A., Ed.. Preserving Wildlife: An International Perspective. Prometheus Books: Amherst NY. pp 84-92.
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Cohen, A. N. 1997. The invasion of the estuaries. Proc. Second International Spartina Conference, Mar 20-21, 1997, 6-9.
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Cohen, A. N.; Carlton, J. T. 1998. Accelerating invasion rate in a highly invaded estuary. Science 279, 555-558 . SFEI Contribution No. 226.
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Cohen, A. N.; Weinstein, A. 1998. The Potential Distribution and Abundance of Zebra Mussels in California. SFEI Contribution No. 225. San Francisco Estuary Institute: Richmond, CA.
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Cohen, A. N.; Weinstein, A. 1998. Methods and Data for Analysis of Potential Distribution and Abundance of Zebra Mussels in California. SFEI Contribution No. 225. A report for CALFED and the California Urban Water Agencies. San Francisco Estuary Institute: Richmond CA.
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Cohen, A. N. 2000. Invasions status and policy on the U. S. west coast. in: Proc. First Nat'l Conf. on Marine Bioinvasions, Jan. 24-27, 1999, Cambridge MA, 40-45.
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Cohen, A. N. 1999. Extent and impacts of ballast water invasions. SFEI Contribution No. 326. West Coast Ballast Outreach Project: Davis, CA. Vol. 1, pp 2-3.
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Cohen, A. N. 1999. Briefing Paper on a Monitoring Plan for Nonindigenous Organisms in the San Francisco Bay/Delta Estuary. SFEI Contribution No. 325. San Francisco Estuary Institute: Richmond CA.
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Cohen, A. N.; Weinstein, A. 2001. Zebra Mussel's Calcium Threshold and Implications for its Potential Distribution in North America. SFEI Contribution No. 356. San Francisco Estuary Institute: Richmond CA.
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Cohen, A. N. 2002. The release of pest species by marine aquaculture: lessons from a South African parasite introduced into California waters. Invasions in Aquatic Ecosystems: Impacts on Restoration and Potential for Control, Proceedings of a Workshop, April 25, 1998, 9-13.
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Cohen, A. N. 2003. On Mitten Crabs and Lung Flukes. In IEP Newsletter. IEP Newsletter. Vol. 16, pp 48-51.
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Cohen, A. N. 2003. Introduction to the San Francisco Estuary. San Francisco Estuary Institute, Save the Bay and San Francisco Estuary Project: Oakland,CA.
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Cohen, A. N. 2004. Invasions in the sea. SFEI Contribution No. 312. Vol. 22, pp 37-41.
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Cohen, A. N. 2004. An Exotic Species Detection Program for the Lower Columbia River Estuary. SFEI Contribution No. 381. San Francisco Estuary Institute: Oakland.
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Cohen, A. N. 2005. Overview of 2004/05 Rapid Assessment Shore and Channel Surveys for Exotic Species in San Francisco Bay. SFEI Contribution No. 452. San Francisco Estuary Institute: Oakland, CA.
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