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Collins, J. N.; Brewster, E.; Grossinger, R. M. 1999. Conceptual models of freshwater influences on tidal marsh form and function, with an historical perspective. SFEI Contribution No. 327. Department of Environmental Services: City of San Jose, CA. p 237 pp.
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Collins, J. N.; Yee, D.; Davis, J. A. 2002. Mercury and tidal wetland restoration. CalFED Journal . SFEI Contribution No. 339.
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Collins, J. N. 2001. Final Draft Master List of NIS Plant Species. SFEI Contribution No. 366. San Francisco Estuary Institute.
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Collins, J. N.; Sutula, M.; Stein, E. 2003. DRAFT California Rapid Assessment (CRAM) Verification Approach. SFEI Contribution No. 283. San Francisco Estuary Institute: Oakland, CA. p p. 9.
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Collins, J. N. 1998. Bay Area Wetlands Ecosystem Goals Project: Key Baylands Species. SFEI Contribution No. 121. San Francisco Estuary Institute.
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Collins, J. N.; Sutula, M.; Stein, E.; Jones, P. 2002. California Rapid Assessment Method for Wetlands v. 1.0. SFEI Contribution No. 246. San Francisco Estuary Institute. p 18.
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Collins, J. N.; Pearce, S. 2004. Analysis of Reference Tidal Channel Plan Form for the Montezuma Wetlands Restoration Project. SFEI Contribution No. 80. San Francisco Estuary Institute: Oakland, CA.
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Collins, J. N.; May, M. 1998. Contamination of Tidal Wetlands. SFEI Contribution No. 228. Richmond CA.
Collins, J. N. 2003. California Rapid Assessment Method (CRAM) - Part 2. SFEI Contribution No. 285. San Francisco Estuary Institute.
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Collins, J. N. 2003. Draft Guidelines for Developing the CRAM Metrics. SFEI Contribution No. 284. San Francisco Estuary Institute: Oakland, CA. p 2.
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Collins, J. N. 2002. Executive Summary: SFEI Component of the Integrated Regional Wetlands Monitoring Pilot Project. SFEI Contribution No. 251. San Francisco Estuary Institute. p 2.
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Collins, J. N. 2007. CRAM Evaluation of Wetland Conditions. SFEI Contribution No. 544. Elk Grove, California. p 15.
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Collins, J. N. 2002. San Francisco Estuary Wetalnds Regional Monitoring Program Plan: Version 1, Framework and Protocols. SFEI Contribution No. 248. San Francisco Estuary Institute: Oakland, CA. p 94.
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Collins, J. N.; Stralberg, D. 2004. Baylands Vegetation Mapping Protocol (Version 1.0). SFEI Contribution No. 304. San Francisco Estuary Institute: Oakland, CA.
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Collins, J. N. 2002. Summary of Crissy Field Monitoring Elements. San Francisco Estuary Institute.
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Collins, J. N. 2002. Executive Summary 2002 (Wetlands Science Program). SFEI Contribution No. 250. San Francisco Estuary Institute. p 4.
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Collins, J. N.; Grosso, C. 2004. First Annual Report of the Montezuma Wetlands Restoration Project Technical Review Team. SFEI Contribution No. 102. San Francisco Estuary Institute: Oakland, CA.
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Collins, J. N.; Wittner, E.; Grosso, C. 2003. South Bay Updates Modern Baylands Habitat Coverage Bay Area EcoAtlas Information System. SFEI Contribution No. 282. San Francisco Estuary Institute: Oakland, CA.
Collins, J. N. 1998. Bay Area Wetlands Ecosystem Goals Project: Key Baylands Habitats. SFEI Contribution No. 122. San Francisco Estuary Institute.
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