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New Justifications for Traditional Types of Water Projects, University of California: Berkeley, CA.
1989. Biological Invasions in the San Francisco Estuary: A Comprehensive Regional Analysis, University of California: Berkeley, CA.
1996. Zebra Mussel's Calcium Threshold and Implications for its Potential Distribution in North America. SFEI Contribution No. 356. San Francisco Estuary Institute: Richmond CA.
2001. 
Year-end Report to the National Science Foundation. SFEI Contribution No. 456. San Francisco Estuary Institute: Oakland, CA.
2005. Water and GrowthL Restructuring the Relationship. Public Officials for Water and Environmental Reform: Sacramento, CA.
1991. Testing Ballast Water Treatment at a Municipal Wastewater Treatment Plant. California Sea Grant/National Sea Grant College Program, La Jolla CA.
2001. Summary of data and analyses indicating that exotic species have impaired the beneficial uses of certain California waters. SFEI Contribution No. 382. San Francisco Estuary Institute: Oakland.
2004. 
Success factors in human-dispersed organisms. Page 8 in:. University of Reading, UK. British Ecological Society, London. p p. 8.
2001. Subsides in the Central Utah Project: Whose CUP is Running over?. Report for the Natural Resources Defense Council: San Francisco, CA.
1988. Ships' Ballast Water and the Introduction of Exotic Organisms into the San Francisco Estuary: Current Status of the Problem and Options for Management. SFEI Contribution No. 224. San Francisco Estuary Institute: Richmond CA.
1998. 
The San Francisco Estuary: A model system for invasions research. San Francisco Estuary Institute: Seattle, WA (abstract).
1997. The Role of Recycling in Community Collection of Hazardous Waste. . University of California: Berkeley CA.
1984. A review of Zebra Mussels' Environmental Requirements. . SFEI Contribution No. 420. San Francisco Estuary Institute: Sacramento, CA.
2005. 
Report of the Washington State Exotics Expedition 2000. SFEI Contribution No. 355. Nearshore Habitat Program, Washington State Department of Natural Resources: Olympia WA.
2001. 
Report of the Puget Sound Expedition, September 8-16, 1998; A Rapid Assessment Survey of Nonindigenous Species in the Shallow Waters of Puget Sound. Washington State Department of Natural Resources, Olympia WA and United States Fish and Wildlife Service: Olympia WA.
1998. Recalculating the Tule Factor. A report for The Bay Institute of San Francisco: Sausalito, CA.
1988. A Rapid Assessment Survey of Nonindigenous Species in the Shallow Waters of Puget Sound. SFEI Contribution No. 223.
1998. 
A Rapid Assessment Survey of Exotic Species in Sheltered Coastal Waters. SFEI Contribution No. 508.
2002. Rapid Assessment Shore Survey for Exotic Species in San Francisco Bay - May 2004. SFEI Contribution No. 453. San Francisco Estuary Institute: Oakland, CA. p 32.
2005. 
Rapid Assessment Channel Survey for Exotic Species in San Francisco Bay - November 2005. SFEI Contribution No. 454. San Francisco Estuary Institute: Oakland, CA. p 7.
2005. 
Project Report for the Southern California Exotics Expedition 2000 A Rapid Assessment Survey of Exotic Species in Sheltered Coastal Waters. SFEI Contribution No. 384. San Francisco Estuary Institute: Oakland.
2002. 
Project Report for the Southern California Exotics Expedition 2000: A Rapid Assessment Survey of Exotic Species in Sheltered Coastal Waters. Appendix C in:. . California Department of Fish and Game, Office of Oil Spill Prevention and Response, Sacramento CA.
2001. Project Report: 2004 Rapid Assessment Survey for Exotic Species in San Francisco Bay. SFEI Contribution No. 451. San Francisco Estuary Institute: Oakland, Ca.
2005. Presence of marine invasive species along the coast of Massachusetts. SFEI Contribution No. 509.
2002. Potential Introduction of Nonindigenous Species to Prince William Sound, Alaska Via Discharge of Tanker Ballast Water. A report for B. P. Exploration (Alaska) Inc.: Anchorage, AK.
1996. Potential Distribution of Zebra Mussels (Dreissena polymorpha) and Quagga Mussels (Dreissena bugensis) in California Phase 1 Report. A Report for the California Department of Fish and Game. San Francisco Estuary Institute.
2007. 
The Potential Distribution of Chinese Mitten Crabs (Eriocheir sinensis) in selected waters of the Western United States with U.S. Bureau of Reclamation Facilities. SFEI Contribution No. 353. United States Department of the Interior, Bureau of Reclamation, Mid-Pacific Region and the Technical Service Center. Vol. 21.
2001. 
The Potential Distribution and Abundance of Zebra Mussels in California. SFEI Contribution No. 225. San Francisco Estuary Institute: Richmond, CA.
1998. 
1998.
Overview of 2004/05 Rapid Assessment Shore and Channel Surveys for Exotic Species in San Francisco Bay. SFEI Contribution No. 452. San Francisco Estuary Institute: Oakland, CA.
2005. 
Nonindigenous Aquatic Species in a United States Estuary: A Case Study of the Biological Invasions of the San Francisco Bay and Delta. U. S. Fish and Wildlife Service: Washington DC.
1995. Monitoring for Non-indigenous Organisms. SFEI Contribution No. 385. San Francisco Estuary Institute: Oakland, CA.
1998. 
2003.
Methods and Data for Analysis of Potential Distribution and Abundance of Zebra Mussels in California. SFEI Contribution No. 225. A report for CALFED and the California Urban Water Agencies. San Francisco Estuary Institute: Richmond CA.
1998. 
Marine Exotic Species in the Caribbean: A Progress Report. University of Puerto Rico/Isla Magueyes Laboratory, La Parguera, Puerto Rico.
2002. Marine biological invasions: lessons from the San Francisco Estuary. Providence RI (abstract).
1997. Investigations into the Introduction of Non-indigenous Marine Organisms via the Cross-Continental Trade in Marine Baitworms. SFEI Contribution No. 357. San Francisco Estuary Institute: Richmond CA.
2001. 
Invasions in the sea. SFEI Contribution No. 312. Vol. 22, pp 37-41.
2004. 
Invasions in Aquatic Ecosystems: Impacts on Restoration and Potential for Control. SFEI Contribution No. 512.
2003. An Introduction to the San Francisco Estuary Third Edition. San Francisco Estuary Project, Oakland CA, Save The Bay, Oakland CA and San Francisco Estuary Institute, Richmond CA: Oakland, Ca. Vol. Third Edit.
2001. 
Introduction to the San Francisco Estuary. San Francisco Estuary Institute, Save the Bay and San Francisco Estuary Project: Oakland,CA.
2003. 
1991.
1990.
Introduced Tidal Marsh Plants in the San Francisco Estuary: Regional Distribution and Priorities for Control. SFEI Contribution No. 321. San Francisco Estuary Institute: Richmond CA. p 42.
1998. 
Introduced Species. Prepared for: California's Ocean Resources: An Agenda for the Future, California Resources Agency: Sacramento, CA.
1995. Inspection for Live Marine Invertebrates in an Oyster Shell Pile at Drakes Bay Oyster Company. San Francisco Estuary Institute.
2006. 
The highly invaded ecosystem of San Francisco Bay. Cawthron Institute, Nelson, New Zealand.
2002. Global Spread of Marine Organisms in the Baitworm Trade. SFEI Contribution No. 455. San Francisco Estuary Institute: Oakland, CA.
2005. Gateway to the Inland Coast: The Story of the Carquinez Strait. California State Lands Commission: Sacramento CA.
1996. Fishing for Food in the San Francisco Bay: An Environmental Health and Safety Report. Save San Francisco Bay Association: Oakland, CA.
1996. Extent and impacts of ballast water invasions. SFEI Contribution No. 326. West Coast Ballast Outreach Project: Davis, CA. Vol. 1, pp 2-3.
1999. 
The exotic species threat to California's coastal resources. SFEI Contribution No. 386. American Society of Civil Engineers: Reston, VA. pp 1418-1426.
1998. 
An Exotic Species Detection Program for Tillamook Bay. SFEI Contribution No. 379. San Francisco Estuary Institute: Oakland.
2004. 
An Exotic Species Detection Program for the Lower Columbia River Estuary. SFEI Contribution No. 381. San Francisco Estuary Institute: Oakland.
2004. 
An Exotic Species Detection Program for Puget Sound. SFEI Contribution No. 380. San Francisco Estuary Institute: Oakland.
2004. 
Environmental Review and Mitigation of a Water Supply Project in California. A report for the Japanese Ministry of Construction, Tokyo.
1996. Documenting the intorduction of estuarine foraminifers: a San Francisco Bay Study. Ann. Mtg., Geological Society of America, Denver, CO, Oct. 1996 (abstract).
1996. Case Study 3.16: Transfer of pathogens and other species via oyster culture. . United Nations Global Invasive Species Program. CAB International: Wallingford, Oxon, UK. p p 92.
2001. Case Study 2.5: Petition for U.S. federal action on the green seaweed Caulerpa taxifolia. . United Nations Global Invasive Species Program. CAB International, Wallingford, Oxon, UK. p 31.
2001. Briefing Paper on a Monitoring Plan for Nonindigenous Organisms in the San Francisco Bay/Delta Estuary. SFEI Contribution No. 325. San Francisco Estuary Institute: Richmond CA.
1999. 
Breifing Paper on a Monitoring Plan for Nonindigenous Organisms in the San Francisco Bay/Delta Estuary. A report for CALFED and the California Urban Water Agencies. San Francisco Estuary Institute. p Richmond CA.
1999. Biological Study Nonindigenous Aquatic Species in a United States Estuary: A Case Study of the Biological Invasions of the San Francisco Bay and Delta. SFEI Contribution No. 185. U.S. Fish and Wildlife Service: Washington DC.
1995. Biological invasions in the San Francisco Estuary. . California Sea Grant College System, University of California, La Jolla CA. pp 7-8.
1998. 1998.
Bay Science: A Report to the Science Content Committee of The Bay Center. San Francisco Estuary Institute.
2005. Approaches to presenting the science of the San Francisco Bay/Delta estuary. SFEI Contribution No. 514. San Francisco Estuary Institute: Oakland, CA.
2005. On Mitten Crabs and Lung Flukes, 16, No. 2.
2003. 1998.
Biological invasions in the estuary, 10, 22-23.
1997. 
Green crabs disrupting fisheries worldwide. p 7 . SFEI Contribution No. 199.
1997. What to do when the well runs low: Linking water supply and land development decisions. California Land Use Law & Policy Reporter 3, 268-271.
1994. 1993.
Transoceanic transport mechanisms: The introduction of the Chinese mitten crab Eriocheir sinensis to California. Pacific Science 51, 1-11. . SFEI Contribution No. 202.
1997. 
1989.
1994.
1996.
1999.
The regulation of biological pollution: Preventing exotic species invasions from ballast water discharged into California coastal waters. Golden Gate University Law Review 30, 787-883 . SFEI Contribution No. 336.
2000. 
Rapid Assessment Survey for Exotic Organisms in Southern California Bays and Harbors, and Abundance in Port and Non-port Areas. Biological Invasions Volume 7, 995 - 1002 . SFEI Contribution No. 423.
2005. 
The potential distribution and abundance of zebra mussels in California. Dreissena! (New York Sea Grant) 9, 1-3 . SFEI Contribution No. 323.
1998. 
1993.
Phytoplankton and bacterial assemblages in ballast water of U.S. military ships as a function of port of origin, voyage time, and ocean exchange practices. Harmful Algae 6, 486-518.
2007. 