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The 1998 Puget Sound Expedition: a rapid assessment survey for nonindigenous species in the shallow waters of Puget Sound. First National Conference on Marine Bioinvasions.
1999. 
Accelerating invasion rate in a highly invaded estuary. Science 279, 555-558 . SFEI Contribution No. 226.
1998. 
Approaches to presenting the science of the San Francisco Bay/Delta estuary. SFEI Contribution No. 514. San Francisco Estuary Institute: Oakland, CA.
2005. Aquatic bioinvasions in the San Francisco Estuary. Berkeley Society for Conservation Biology Annual Meeting.
1999. Asian Kelp Undaria pinnatifida in the northeastern Pacific Ocean. Biological Invasions 4, 333-338 . SFEI Contribution No. 417.
2002. 
Bay Science: A Report to the Science Content Committee of The Bay Center. San Francisco Estuary Institute.
2005. Biological invasions and opportunities for their regulation on the west coast of the United States. Proc. Eighth Int'l Zebra Mussel and Aquatic Nuisance Species Conf..
1998. 
Biological invasions: An unregulated threat to estuarine biodiversity. Ann. Mtg., Society for Conservation Biology, Victoria BC (abstract)..
1997. Biological Invasions in Aquatic Ecosystems: Impacts on Restoration and Potential for Control. Proceedings of a Workshop, April 25, 1998,.
1998. 
Biological invasions in the estuary, 10, 22-23.
1997. 
1998.
Biological invasions in the San Francisco Estuary. Ann. Mtg., American Fisheries Society, Aug 24-28, Monterey CA (abstract)..
1997. Biological invasions in the San Francisco Estuary. In Marine and Aquatic Nonindigenous Species in California: An Assessment of Current Status and Research Needs. . Marine and Aquatic Nonindigenous Species in California: An Assessment of Current Status and Research Needs. California Sea Grant College System, University of California: La Jolla, CA. pp 7-8.
1998. Biological invasions in the San Francisco Estuary. Eighth International Zebra Mussel and Aquatic Nuisance Species Conference, 14.
1998. Biological invasions in the San Francisco Estuary. . California Sea Grant College System, University of California, La Jolla CA. pp 7-8.
1998. Biological Invasions in the San Francisco Estuary: A Comprehensive Regional Analysis, University of California: Berkeley, CA.
1996. 1996.
Biological invasions of the San Francisco Bay and Delta. Summary of comments. In U. S. Fish and Wildlife Service Directorate Meeting. U. S. Fish and Wildlife Service Directorate Meeting. Ogunquit ME, June 12, 1996.
1996. Biological Study Nonindigenous Aquatic Species in a United States Estuary: A Case Study of the Biological Invasions of the San Francisco Bay and Delta. SFEI Contribution No. 185. U.S. Fish and Wildlife Service: Washington DC.
1995. Breifing Paper on a Monitoring Plan for Nonindigenous Organisms in the San Francisco Bay/Delta Estuary. A report for CALFED and the California Urban Water Agencies. San Francisco Estuary Institute. p Richmond CA.
1999. Bridging Divides: Maritime Canals as Invasion Corridors. Monographiae Biologicae 83. Kluwer Academic Publishing: Dordrecht, The Netherlands.
2006. Bridging Divides: Maritime Canals as Invasion Corridors. . Kluwer Academic Publishing: Dordrecht, The Netherlands.
2005. Bridging Divides: Maritime Canals as Invasion Corridors. . Kluwer Academic Publishing: Dordrecht, The Netherlands.
2005. Briefing Paper on a Monitoring Plan for Nonindigenous Organisms in the San Francisco Bay/Delta Estuary. SFEI Contribution No. 325. San Francisco Estuary Institute: Richmond CA.
1999. 
"Case studies" on exotic species transported with oyster and marine baitworm shipments. In Toolkit on Best Practices for Prevention and Management. Toolkit on Best Practices for Prevention and Management. UN Global Invasive Species Programme.
2000. Case Study 2.5: Petition for U.S. federal action on the green seaweed Caulerpa taxifolia. . United Nations Global Invasive Species Program. CAB International, Wallingford, Oxon, UK. p 31.
2001. Case Study 3.16: Transfer of pathogens and other species via oyster culture. . United Nations Global Invasive Species Program. CAB International: Wallingford, Oxon, UK. p p 92.
2001. Case study: hitchhikers in or on marine baitworms and their packing material. In Toolkit for Managing Invasive Species. Toolkit for Managing Invasive Species. United Nations Global Invasive Species Program.
2001. Case study: transfer of pathogens and other species via oyster culture. In Toolkit for Managing Invasive Species. Toolkit for Managing Invasive Species. United Nations Global Invasive Species Program.
2001. Characterizing vectors of marine invasions. In Marine Bioinvasions: Ecology, Conservation and Management Perspectives. . Marine Bioinvasions: Ecology, Conservation and Management Perspectives. Springer: Heidelberg, Germany.
2006. 1991.
The colonial ascidian Didemnum sp. A: Current distribution, basic biology, and potential threat to marine communities of the northeast and west coasts of North America. Journal of Experimental Marine Biology and Ecology 99-108.
2007. 
1996.
1997.
Dispersal Ecology. Blackwell Publishing: Oxford.
2002. Documenting the intorduction of estuarine foraminifers: a San Francisco Bay Study. Ann. Mtg., Geological Society of America, Denver, CO, Oct. 1996 (abstract).
1996. 1992.
Environmental Review and Mitigation of a Water Supply Project in California. A report for the Japanese Ministry of Construction, Tokyo.
1996. Environmental threats to tidal marsh vertebrates of the San Francisco Bay Estuary. Studies in Avian Biology 32, 176-339 . SFEI Contribution No. 489.
2006. 
Episodic global dispersal in shallow water marine organisms: The case history of the European shore crabs Carcinus maenas and Carcinus aestuarii. Biogeography 30, 1809-1820 . SFEI Contribution No. 383.
2003. 
Exotic organisms; California's Emerging Environmental Challenges. California's Emerging Environmental Challenges; Proceedings of a Workshop, 5-9 to 5-13.
1998. 
Exotic organisms in southern California Bays and Harbors. Marine Bioinvasions Conference . SFEI Contribution No. 481.
2002. Exotic Organisms in Southern California Bays and Harbors. Page 22 in:. In Abstracts, Third International Conf. on Marine Bioinvasions, Mar. 16-19, Scripps Institution of Oceanography, La Jolla, CA. Abstracts, Third International Conf. on Marine Bioinvasions, Mar. 16-19, Scripps Institution of Oceanography, La Jolla, CA. p p. 22.
2003. An Exotic Species Detection Program for Puget Sound. SFEI Contribution No. 380. San Francisco Estuary Institute: Oakland.
2004. 
An Exotic Species Detection Program for the Lower Columbia River Estuary. SFEI Contribution No. 381. San Francisco Estuary Institute: Oakland.
2004. 
An Exotic Species Detection Program for Tillamook Bay. SFEI Contribution No. 379. San Francisco Estuary Institute: Oakland.
2004. 
Exotic species in California's coastal waters. Sanctuary Currents '98, Symposium on the Monterey Bay National Marine Sanctuary.
1998. The exotic species threat to California's coastal resources. SFEI Contribution No. 386. American Society of Civil Engineers: Reston, VA. pp 1418-1426.
1998. 
The exotic species threat to California's coastal resources. California and the World Ocean '97, 1418-1426.
1998. Extent and impacts of ballast water invasions. SFEI Contribution No. 326. West Coast Ballast Outreach Project: Davis, CA. Vol. 1, pp 2-3.
1999. 
2002.
Fishing for Food in the San Francisco Bay: An Environmental Health and Safety Report. Save San Francisco Bay Association: Oakland, CA.
1996. Gateway to the Inland Coast: The Story of the Carquinez Strait. California State Lands Commission: Sacramento CA.
1996. Global Spread of Marine Organisms in the Baitworm Trade. SFEI Contribution No. 455. San Francisco Estuary Institute: Oakland, CA.
2005. Green crabs disrupting fisheries worldwide. p 7 . SFEI Contribution No. 199.
1997. The hidden costs of California's water. In Life on the Edge: A Resource Guide to California's Endangered Wildlife. Life on the Edge: A Resource Guide to California's Endangered Wildlife. Biosystems Books: Santa Cruz, CA. pp 288-302.
1994. The highly invaded ecosystem of San Francisco Bay. Cawthron Institute, Nelson, New Zealand.
2002. The impact of an invasive Atlantic cordgrass (Spartina alterniflora) on San Francisco Bay Song Sparrow populations: direct and indirect influence. In Terrestrial Vertebrates of Tidal Marshes: Evolution, Ecology and Conservation. Terrestrial Vertebrates of Tidal Marshes: Evolution, Ecology and Conservation. Silver Spring, MD.
2002. Impact of invasive Spartina alterniflora on song sparrow and marsh wren populations in San Francisco Bay salt marshes. Proceedings of the International Spartina Conference.
2005. Impacts from the Asian clam Potamocorbula amurensis. In National Management Plan. National Management Plan. National Invasive Species Council: Washington DC.
2001. Impacts of invasions in the Bay and Delta. Abs. Proc. 75th Ann. Mtg., Pac. Div. Amer. Assoc. Adv. Sci..
1994. Inspection for Live Marine Invertebrates in an Oyster Shell Pile at Drakes Bay Oyster Company. San Francisco Estuary Institute.
2006. 
Introduced Marine and Estuarine Invertebrates. In The Light & Smith Manual: Intertidal Invertebrates of the California and Oregon Coast. . The Light & Smith Manual: Intertidal Invertebrates of the California and Oregon Coast. University of California Press: Berkeley, Ca.
2007. Introduced Species. Prepared for: California's Ocean Resources: An Agenda for the Future, California Resources Agency: Sacramento, CA.
1995. Introduced Tidal Marsh Plants in the San Francisco Estuary: Regional Distribution and Priorities for Control. SFEI Contribution No. 321. San Francisco Estuary Institute: Richmond CA. p 42.
1998. 
Introduction, dispersal and potential impacts of the green crab Carcinus maenas in San Francisco Bay. Marine Biology 122, 225-237.
1995. 
Introduction for Report on the Subtidal Habitats and Associated Biological Taxa in San Francisco Bay. In Report on the Subtidal Habitats and Associated Biological Taxa in San Francisco Bay. Report on the Subtidal Habitats and Associated Biological Taxa in San Francisco Bay. NOAA National Marine Fisheries Service. p 35.
2007. 1990.
1991.
Introduction to the San Francisco Estuary. San Francisco Estuary Institute, Save the Bay and San Francisco Estuary Project: Oakland,CA.
2003. 
An Introduction to the San Francisco Estuary Third Edition. San Francisco Estuary Project, Oakland CA, Save The Bay, Oakland CA and San Francisco Estuary Institute, Richmond CA: Oakland, Ca. Vol. Third Edit.
2001. 
Invasion by a Japanese marine microorganism in western North America. Hydrobiologia 421, 25-30 . SFEI Contribution No. 343.
2000. 
The invasion of the estuaries. Proc. Second International Spartina Conference, Mar 20-21, 1997, 6-9.
1997. 
The invasion of the Pacific Coast by the European green crab. Eighth International Zebra Mussel and Aquatic Nuisance Species Conference, Page 44.
1998. The invasion of the Pacific Coast by the European green crab Carcinus maenas. Proc. Eighth Int'l Zebra Mussel and Aquatic Nuisance Species Conf., 173-177.
1998. 
Invasions in Aquatic Ecosystems: Impacts on Restoration and Potential for Control. SFEI Contribution No. 512.
2003. Invasions in the San Francisco Estuary. In National Management Plan. National Management Plan. National Invasive Species Council: Washington DC.
2001. 2004.
Invasions in the sea. SFEI Contribution No. 312. Vol. 22, pp 37-41.
2004. 
Invasions status and policy on the U. S. west coast. First National Conference on Marine Bioinvasion, 40-45.
1999. Invasions status and policy on the U. S. west coast. in: Proc. First Nat'l Conf. on Marine Bioinvasions, Jan. 24-27, 1999, Cambridge MA, 40-45.
2000. 
The invasive colonial ascidian Didemnum sp.: current distribution, basic biology, and potential threat to marine communities of the northeast and west coasts of the United States. J. of Experimental Marine Biology and Ecology . SFEI Contribution No. 498.
2005. Investigations into the Introduction of Non-indigenous Marine Organisms via the Cross-Continental Trade in Marine Baitworms. SFEI Contribution No. 357. San Francisco Estuary Institute: Richmond CA.
2001. 