| Introduction
The Regional Monitoring Program (RMP) Sediment Workgroup (SWG)
met three times in 1997 and 1998 to discuss how to improve RMP sediment
monitoring. The workgroups considerations were guided by the
RMPs Objectives and Management Questions. Additionally, conceptual
models were developed to guide the discussions and are included.
Seven questions pertinent to RMP monitoring design were discussed
by the group, and form the basic framework for this report. The
recommendations reported below reflect the general agreement of
the workgroup based on the discussions at the meeting and follow-up
written comments. The written comments of several workgroup participants
are also included.
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Conceptual Models
The RMP Reviewers recommended that:
"Mass balance inventories of contaminants should be developed
which can, in turn, lead to models that attempt to account for the
distribution, fate, and residence times of contaminants in the Bay
."
(Bernstein and OConnor, 1998).
The National Research Councils Managing Troubled Waters (NRC,
1990) also recommended the use of conceptual models in monitoring
design. They defined conceptual models as:
"descriptions of causes and effects that define how environmental
changes are expected to occur. They describe links among the resources
at risk, the physical, chemical, and biological attributes of the
system, and the human and natural causes of changes. The understanding
that results permits testable questions to be clearly stated and
ultimately evaluated."
Two related conceptual models of sediments were developed by the
SWG based on examination of several existing models. The sediment
transport and fate model and the exposure and effects model are
shown in Figure 1. The transport and fate
model illustrates how sediments are involved in the conveyance,
storage, and transformation of contaminants. The animal exposure
and effects model helps understand the linkages between sediment
contamination and effects. A brief description of the models follows,
and more detailed descriptions are included in the Atlas of Sediment
Contamination, Toxicity, and Benthic Assemblages (Thompson and Daum,
in prep.).
Contamination associated with sediments may derive from contaminants
in dissolved form that enter the Estuary in runoff or from the ocean,
and adsorb onto the surfaces of mineral particles, or into the organic
matrix of particulate organic material (of various origins). Contaminant-laden
sediment particles may be directly transported into the Estuary
from its tributary watersheds, or from atmospheric deposition directly
onto the Estuary surface. As runoff from local rivers and streams
brings new mineral particles into the Estuary, they undergo chemical
changes that facilitate adsorption of dissolved contaminants (Stumm
and Morgan, 1981). This mechanism may explain the generally higher
contaminant concentrations observed in sediments at the Southern
Slough stations and near the turbidity maximum (entrapment zone)
in the Northern Estuary.
Sediments exist as complex and dynamic mixtures of mineral particles,
particulate organic material (detritus), microbes, and flocculated
chemicals. The exact composition of sediments at any given location
depends on proximity to the sources of those materials, and water
physics and chemistry. Contaminants in sediments may be associated
with any of those sediment fractions. The spatial and temporal variability
observed in sediment contaminant concentrations reflects the complexity
of estuarine biogeochemical cycles and the varied sources of contamination.
Contaminant distribution is mediated through sediment transport
and transformations of sediment-associated contaminants, and includes
the processes of suspension, deposition, adsorption, and desorption.
Sediment deposition and resuspension is known to be very dynamic
in the San Francisco Estuary (Krone, 1979), often removing or depositing
large volumes of sediment within short time-periods. Rates of deposition
and resuspension are variable over tidal, spring-neap, and annual
time-scales. Spatial variability of deposition and resuspension
rates also occurs within the Estuary as a result of variation in
depth, cohesiveness, and biological activity. The annual recycling
of sediments by resuspension and deposition is 10-100 fold greater
than sediment inflow or outflow (LTMS, 1996). Therefore, quantifying
where and when erosional and depositional areas occur will help
understand the sources and sinks of many contaminants associated
with sediments. Such dynamic resuspension, transportation, and deposition
in sediments may result in sediment measurements that do not necessarily
reflect proximity to contaminant sources.
The processes of adsorption and desorption of contaminants from
sediment components are fundamental to understanding sediment conveyances.
The state of any contaminant is determined by its intrinsic solubility
and site-specific conditions. The intrinsic solubility of an inorganic
contaminant is primarily determined by its complex solution chemistry,
and for organic contaminants, is determined by the polarity of the
molecule. Those processes affect not only sediment contaminant concentrations,
but dissolved and particulate forms in water as well.
Contaminant transformations are caused directly by biological metabolism
and indirectly as a result of diagenic processes in deposited sediments.
Mercury methylation is the most obvious example of a deleterious
contaminant transformation. Mercury bioaccumulates in the food web
as methylmercury, which is produced as a byproduct of bacterial
sulfate reduction. Consequently, anaerobic sediments and wetlands
can be relatively efficient methylation areas.
Organisms may be exposed to sediment-associated contaminants in
several ways. Resuspended sediments may desorb contamination into
the dissolved phase exposing plankton and fish to the contaminants.
Other organisms may ingest sediment particles directly. Sediment
dwelling organisms may be exposed to interstitial water containing
elevated concentrations of dissolved contaminants, or may ingest
sediment. Contaminant effects are manifested when the exposure (frequency
and duration) and dose (concentration) exceed the assimilative capacity
of the organism. Effects may be non-lethal bioaccumulation of contaminants
at levels below some threshold, to acute mortality if the toxic
threshold is exceeded. Predators, production of gametes and offspring,
fecal material, and dead organisms all provide pathways of contaminant
flux from sediments. Burrowing and tube-building organisms that
live in the sediments may mix the deeper layers with more recently
deposited material altering sediment and pore water concentrations.
All of the mechanisms described above may affect what is measured
by the RMP. Monitoring measurements alone can only provide information
on the status of sediments at the time collected. Understanding
the variability among the stations, Estuary reaches, and between
sampling periods, or over the long-term will require understanding
more of the details of the mechanisms summarized above. Such understanding
must come from focused special studies. That information is critical
to regulatory and management strategies such as the development
of total maximum daily loads (TMDLs), toxicity reduction, and reducing
human health risks from eating seafood.
Issues and Recommendations for Sediment Monitoring
The sediment workgroups discussion of current RMP sediment
monitoring and considerations for improvement revolved around seven
questions. In considering these questions, they referred to the
RMP Objectives and Monitoring Questions.
1. Where should sediment contamination be monitored?
RMP management questions (numbers in parentheses reference specific
management questions) refer to "Estuary reaches" (1c)
and to "shallower margins" (2c). Characterization of reaches
and shallows may be best accomplished using probabilistic sampling
(Stevens and Olsen, 1991). However, an RMP study by Jassby (1997)
recommended systematic sampling for water. A major question for
redesign is, should RMP change its basic design, gaining representativeness,
but losing information about site-specific trends collected since
1991? Management question 3a refers to a variety of locations to
document sources and loadings. Management question 2d suggests relating
spatial patterns and trends to estuarine processes. Addressing those
questions suggests sampling specific locations, perhaps best done
through Pilot or Special Studies.
Recommendations
Both probabilistic and fixed-site sampling will be necessary to
address the RMP management questions. The RMP probably cannot afford
to conduct adequate random stratified probabilistic (by reach or
depth) sampling because of the large sample sizes needed. A "test"
of this concept may be conducted in collaboration with the U.S.
Environmental Protection Agencys (U.S. EPA) Environmental
Monitoring and Assessment Program (EMAP) in 2000 when they plan
to sample San Francisco Bay using random stratified sampling.
The RMP status and trends program should continue to conduct fixed-site
sampling at several "representative" sites in each reach
in order to continue tracking the established long-term trends.
This will require some testing of "representativeness",
perhaps in collaboration with EMAP. A Special Study to determine
the optimal (cost:power) number of samples per reach necessary to
be "representative", should be conducted.
To address management question about sources and shallow water,
the RMP should begin Pilot Studies to establish additional base
program sites:
- At the mouths of major tributaries to begin to learn more about
potential sources of contaminated sediments (coordinate with Pathways
and Loadings Program),
- In the shallower margins of the Estuary to learn more about
gradients of sediment concentration from shallow to deep, and
- Near selected "hotspots" to understand timescales
of recovery.
Special Studies on sediment processes were given a high priority
by the SWG to address management questions. Special Studies should
be conducted in specific areas, on specific questions, particularly
in areas where there are important human or ecological resources
that may be impacted by sediment contamination, and to address questions
about sediment processes that affect concentrations. Such studies
could be "piggy-backed" with the Pilot Study gradients
monitored above in order to provide information needed to understand
sediment transport and fate processes on time scales related to
estuarine events such as flood flows or El Niño. More frequent
sampling (than trends monitoring) along several selected gradients
of inflow, sediment supply, or contamination would elucidate sources,
residence times, and fates of sediment contamination. That information
is crucial to making sound regulatory and management decisions about
sediments.
The subjects of such studies may come from Regional Board needs
for information for regulatory purposes (e.g., methylmercury processes),
or as identified by the Technical Review Committee as priority information
needs.
2. How frequently should sediments be monitored?
RMP management question 2a refers to "long-term" changes,
questions 2b and 3c refer to monitoring changes in inputs or sources,
and questions 2d, 3b, and 3d address monitoring sediment changes
at time scales related to processes such as sediment transport and
transformations.
Recommendations
As with the spatial question, addressing the RMP management questions
about temporal changes will require different sampling regimes.
For tracking long-term trends, several data sets were examined.
Analysis of RMP sediment contaminant trends showed that only about
7.5% of the sites exhibited significant upward or downward trends
for some contaminant between 1991 and 1997 (Daum and Thompson, in
prep). Neither RMP or U.S. Geological Survey (USGS) sediment data
collected monthly at several locations (USGS, unpublished), showed
consistent evidence of seasonal trends in concentrations, although
changes in some metals were observed in conjunction with the January
1997 floods.
Based on the above, the work group recommended that the RMP reduce
its sediment trends monitoring. Although there was general agreement
that the RMP could reduce the sampling frequency at base program
sites, exactly when and how frequent was not determined. In order
to address long-term trends, annual sampling at a fixed "index
sampling period", probably in the Fall, would be adequate.
However, some participants suggested monitoring every three or five
years.
Addressing the "process" questions, will require Special
Studies. Studies that sampling at time scales related to flow and
transport events could provide the necessary understanding of how
these processes influence sediment concentrations. For example,
if there is a need to understand loadings from tributaries related
to sediment pulses, then frequent sampling associated with flow
events would be necessary. Special Studies will be needed to understand
time scales of change related to specific contaminants of concern.
Time scales may differ between contaminants. For example, copper
appears to be diluted following high flows, whereas mercury appears
to be enriched.
These studies could be "piggy-backed" with the gradient
studies recommended under question 1. Additionally, the RMP should
investigate the possibility of closer collaboration and support
for ongoing USGS efforts where sampling is conducted at sites near
the major tributaries in the Northern Estuary and South Bay.
3. Which sediment variables should be monitored?
The RMP currently monitors a wide variety of sediment contaminants,
as listed in the Quality Assurance Project Plan (Lowe et al., 1999).
Additionally, non-contaminant sediment variables (e.g., grain-size,
organic material, ammonia, sulfide) that facilitate the understanding
and interpretation of other RMP components (sediment toxicity, benthic
sampling) are measured.
RMP management question 1b refers to comparisons of monitoring
results to relevant guidelines, suggesting that it is important
to at least monitor those contaminants for which guidelines exist.
Monitoring "contaminants of concern" identified by the
Regional Board and other research on contaminant effects in the
Estuary should also be considered.
Recommendations
There was general agreement that monitoring a of a suite of contaminants
should be continued. The RMP should be adaptive and responsive to
new information and the Regional Boards identification of
"contaminants of concern". The appropriate pesticides
to monitor in sediments should be evaluated based on use patterns
through consultation with the Central Valley Regional Board. In
particular, measurements of chlorpyrifos and diazinon in sediments
should be investigated.
Pilot Studies on the expanded use of ELISA or the Reporter Gene
System (RGS) should be conducted, particularly for use in future
Pilot and Special Studies. Both methods are quicker and less expensive
than conventional chemistry.
Special Studies on refining the relationships between sediment
grain-size fractions (phi or size frequency distributions), total
organic carbon, and aluminum vs. metals may help understand and
develop predictive tools that could be used to estimate sediment
contaminant concentrations.
Most SWG participants felt that the ratio of acid-volatile sulfides:sumultaneously
extracted metals (AVS:SEM) would not be useful as a routine monitoring
tool. However, Pilot Study sampling at some sites may be useful
to see if it helps better explain either sediment toxicity or benthic
results. The SWG also discussed the possibility of measuring metals
in pore water as an alternative approach to determining bioavailability
of metals in sediments. This measurement may also be appropriate
for a Special Study comparison to bulk phase and AVS-SEM analyses.
4. To what depth should sediment contaminants be measured?
Since the RMP began, the top 5 cm of sediment has been sampled.
The use of that depth was agreed to in an early project scoping
session as an alternative to the widely used 2 cm depth in other
monitoring programs. Since then, the question of "why 5 cm?",
has arisen many times. The RMP external review panel addressed this
question in its explicit recommendation (3j):
"The RMP should use data from the USGS on the chemical concentrations
in dated sediment cores to determine the time required for particles
to be buried so deeply that they no longer contribute trace substances
to surface sediments or to total suspended solids (TSS). This needs
to be known to gauge the number of years required for surface sediments
and TSS to respond to changes in contaminant inputs. This in turn
is needed to properly scope the RMPs trend monitoring design."
The bottom of the Bay is of variable substrate and composition,
and changes over time. Recent USGS imagery of the Bay floor between
the Golden Gate and Central Bay shows a variety of bottom features
including large sand waves, rubble fields, sedimented channels,
and rock outcrops. Previous studies have shown that parts of the
Bay may be alternately depositional or erosional over various time
scales. USGS sediment cores in San Pablo Bay indicated much higher
deposition rates than those in Richardson Bay, and had quite different
active sediment layers. The active layer for Richardson Bay was
33 cm (Fuller et al., 1999). USGS also estimated that about half
of the contaminants deposited 35 years ago would remain in that
mixed layer. Jaffe et al. (1998) showed that San Pablo Bay is a
net erosional area as a result of sediment starvation from dams
constructed in the Central Valley and Sierra Nevada foothills. They
predict that this erosion will gradually expose mercury-laden sediments
deposited after the hydraulic mining era of the late 1800s. Such
quantitative understanding of current and future mercury input rates
from sediments is a vital piece of information for development of
the mercury total maximum daily loads. The above information indicates
that erosion and deposition, thus burial rates in the Bay are very
complex and that no standard sampling regime can be used for monitoring.
Sediment types at the RMP sites range from fine muddy sediments
in the shallower areas of the Bay (Grizzly Bay, Redwood Creek) to
coarse sandy sediments at sites in the main channel of the Sacramento
River, at Davis Point and Red Rock. The depositional regimes are
probably quite different among the RMP sites.
Another consideration is how to deal with sediments that have an
anoxic layer. Anoxic sediments bind differently with trace metals
than oxidized sediments (Stumm and Morgan, 1981). In practice, the
anoxic layer at most RMP sites is below the currently collected
5 cm depth. However, if the RMP establishes new sites in shallower
areas, this could become a problem. Currently, the USGS samples
the top 2-3 cm, sampling only the oxic layer.
Recommendations
The SWG concluded that there is no uniform active sediment layer
or uniform burial depth in the Bay that could be used for sediment
monitoring. Sampling the entire active sediment layer is not practical
because of the volume of sediment that would need to be collected
at many sites which would yield long term average concentrations.
The RMP appears to be more interested in monitoring changes in the
most recently deposited material in order to assess changing sediment
inputs on at least annual time scales.
The RMP should continue to sample the top 5 cm when it is oxidized.
If the anoxic layer is less than 5 cm deep, only the oxic layer
should be collected. The rationale for that recommendation is that
the top 5 cm provides a reasonable estimate of the most recently
deposited material and is the layer to which most organisms are
exposed.
There are other coring data available and perhaps a Special Study
to assess that information would shed further light on this question.
Pilot sampling in new areas (tributaries, shallow margins) should
be conducted to determine adequate sampling depths.
The SWG generally endorsed the CHC SWGs recommendations of
Special Studies to determine the "active sediment layer"
at various locations in the Estuary.
5. Is sediment toxicity testing using Eohaustorius and bivalve
larvae adequate?
Although not specifically referred to by the RMP external review,
their recommendation to rationalize all RMP components (3a) is the
basis for the SWG addressing this question. Sediment bioassays are
used in the RMP to address Objective 3: Measure contaminant effects
on the selected parts of the Estuary ecosystem, and Objective 4:
Compare monitoring information to relevant water quality objectives
and other guidelines. The latter refers to the Basin Plan narrative
for no toxicity.
Currently, sediment bioassays have been used since 1991 as part
of the BPTCP Pilot Studies and were adopted when the RMP began in
1993. The RMP currently conducts sediment toxicity tests twice a
year using Eohaustorius (amphipod) exposed to bulk sediments and
bivalve embryos exposed to sediment elutriates. Questions have arisen
about the interpretation of toxicity to non-resident organisms,
and the use of sediment elutriates to evaluate toxicity. Samples
from RMP freshwater sites are "salted-up" during the bioassays
raising questions of applicability.
Another amphipod Ampelisca abdita is a resident (not native) that
dominates many of the Central Bay and estuarine benthic samples.
Like Eohaustorius it has well developed protocols and is widely
used in sediment bioassays by other monitoring programs (e.g., EMAP).
The RMP sponsored Special Studies in 1994-1996 to develop the use
of A. abdita, including a chronic endpoint (Weston, 1996). However,
almost all testing to date in the Estuary has used Eohaustorius
providing important information about long-term trends in toxicity
that would be lost if testing using that species were to be discontinued.
Sediment or other environmental factors that cause sediment toxicity
are poorly understood.
The currently used amphipod, Eohoustorius estuarius is a well established
bioassay species and provides reliable indications of sediment toxicity.
However, it is not a resident species, and preliminary estimates
of how well sediment bioassays actually predict benthic impacts
have shown little relationship (SFEI, unpubl.). Sites with Eohaustorius
toxicity often have high abundances of Ampelisca, although it is
recognized that these species might respond differently to different
contaminants and environmental variables. Using A. abdita in laboratory
biaossays, as well as studying their relationships to contamination
in benthic samples from the same sites could provide a better understanding
of environmental effects of contaminants on the benthic resources
of the Bay (Objective 3).
Sediment elutriates were used by the RMP as a different type of
test and are also used in dredged material testing. However, exposures
to elutriates is not considered to be a realistic exposure of the
embryos. Newer methods that provide more realistic exposures to
dissolved contaminants at the sediment water interface have been
tested (Anderson et al., 1996) and may be more suitable for the
RMP.
Recommendations
The SWG did not reach any agreement on whether the RMP should use
Eohaustorius or Ampelisca. The Army Corps of Engineers representative
suggested using several species to conform with recommendations
of the Inland Testing Manual. The SWG agreed that side-by-side testing
was necessary, therefore Pilot Studies are recommended to test the
use and application of both species before any decisions are made
about replacement or additions. The proposed EMAP sampling in 2000
would help accomplish that testing.
Studies comparing resident and non-resident Ampelisca should be
conducted to determine if there is a contaminant acclimation effect
by resident organisms.
Continue to use the bivalve embryo test, but switch to the Sediment-Water
Interface exposures method rather than elutriates. Side-by-side
testing at a few locations would help transition, but we should
not expect directly comparable results. Conduct TIEs to understand
causes of toxicity.
At the freshwater locations develop and implement more appropriate
tests. Possibly Ceriodaphnia or larval Corbicula, in lieu of bivalve
embryos, and a freshwater amphipod such as Hyallela or Gammarus
instead of Eohaustorius. Such development could occur through a
Pilot Study.
Continued Special Studies to determine causes of sediment toxicity
should be a high priority as suggested by the RMP Program reviewers
and RMP Management Question 4c. It is not possible to make management
decisions about how to reduce toxicity until the causitive agents
are known.
6. Should the RMP initiate a sediment bioaccumulation component?
The RMP currently monitors bioaccumulation in transplanted bivalves
suspended in the water column, and in fish tissue. However, no monitoring
of bioaccumulation from exposure to sediments is conducted, leaving
an information gap about the transfer of contaminants from sediments
to organisms. Sediment testing for dredging includes a laboratory
bivalve bioaccumulation test. An RMP sediment bioaccumulation component
could provide a background data base to which dredge testing could
be compared. It would also provide information about the link between
sediments and uptake by organisms (RMP Management Question 4a).
Which species to use, locations, and times to monitor should be
considered.
The USGS currently samples the introduced Asian clam Potamocorbula
amurensis at several sites in the northern Estuary. They have found
it to be a sensitive and useful indicator of contamination (e.g.,
Pereira et al., 1992; Parcheso et al., 1997). Similarly, Corbicula
fluminea has been sampled by the States Toxic Substance Monitoring
Program in the Delta and provides useful information about bioaccumulation
by a resident species (SWRCB, 1996). However, both P. amurensis
and C. fluminea are filter feeders and their bioaccumulation patterns
more closely resemble suspended sediments than bedded sediments.
Recommendations
The RMP should begin a Pilot Study of resident benthic bivalve
bioaccumulation in order to address several RMP management questions.
Using resident bivalves would provide an easily interpretable measure
of exposure, bioavailability, and accumulation of many persistent
sediment contaminants, and their impact on the condition of resident
bivalves as diagrammed on Figure 1. The use of a deposit-feeding
clam was recommended. Macoma or Tapes could be used at some locations
but their availability may be limited to a few locations and times.
The choice of species, locations, and times should be investigated
in the recommended Pilot Study. The Corps of Engineers representative
suggested that two species be used, and requested that at least
one be from the Inland Testing Manual. The RMP should explore closer
collaboration and support of ongoing USGS bivalve monitoring programs.
Such collaboration would strengthen the RMP by building upon an
existing and successful sampling program and encouraging further
participation in the RMP by the USGS.
There was no agreement on the use of laboratory measurements of
bioaccumulation using field sediment. However, Special Studies could
be useful in understanding the relationships between laboratory
bioaccumulation measurements as used by the dredgers and field bioaccumulation
measurements.
7. Should benthic macrofauna be monitored?
A summary of the RMP Benthic Pilot Study was presented to the SWG.
The recommendation at that time was to continue the Pilot Study
with the goal of better documenting how different water years affect
benthos, and linking sediment contamination with benthic effects
(RMP Management Question 4c). A Technical Report of the findings
from the Benthic Pilot Study is being prepared by SFEI staff. That
report will be sent out for external review and comment on the usefulness
of benthic monitoring for the RMP.
The SWG did not discuss this question further. They encouraged
the completion of the Benthic Pilot Study Technical Report and its
subsequent external review and recommendations.
References Cited
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Publishers, Ann Arbor, MI.
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Regional Monitoring Program for Trace Substances in the San Francisco
Estuary. RMP Technical Report 28, San Francisco Estuary Institute,
Richmond, CA.
Daum, T. and B. Thompson. In preparation. Trends in Sediment Contaminant
Concentrations in San Francisco Bay. San Francisco Estuary Institute,
Richmond, CA.
Fuller, C., A. van Geen, M. Baskaran, and R. Anima. 1999. Sediment
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Pereira, W.E., F Hostettler, J. Rapp. 1992. Bioaccumulation of
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in the Asian clam, Potamocorbula amurensis in San Francisco Bay
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Water Resources Control Board, Sacramento, CA.
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Toxicity, and Benthic Assemblages in San Francisco Bay. San Francisco
Estuary Institute, Richmond, CA.
Weston, D. 1996. Further development of a chronic Ampelisca abdita
bioassay as an indicator of sediment toxicity. RMP Technical Report
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