Sorted by Title
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Title | Author | Year | Link |
SFEI Program |
| 1993 Annual Report: San Francisco Estuary Regional Monitoring Program for Trace Substances | San Francisco Estuary Institute | 1994 | RMP | |
| 1994 Annual Report: San Francisco Estuary Regional Monitoring Program for Trace Substances | San Francisco Estuary Institute | 1996 | RMP | |
| 1994 Executive Summary: San Francisco Estuary Regional Monitoring Program for Trace Substances | San Francisco Estuary Institute | 1996 | RMP | |
| 1995 Annual Report: San Francisco Estuary Regional Monitoring Program for Trace Substances | San Francisco Estuary Institute | 1997 | RMP | |
| 1995 Executive Summary: San Francisco Estuary Regional Monitoring Program for Trace Substances | San Francisco Estuary Institute | 1997 | RMP | |
| 1996 Annual Report: San Francisco Estuary Regional Monitoring Program for Trace Substances | San Francisco Estuary Institute | 1998 | RMP | |
| 1996 Executive Summary: San Francisco Estuary Regional Monitoring Program for Trace Substances | San Francisco Estuary Institute | 1998 | RMP | |
| 1997 Annual Report: San Francisco Estuary Regional Monitoring Program for Trace Substances | San Francisco Estuary Institute | 1999 | HTML PDF | RMP |
| 1998 Annual Results: San Francisco Estuary Regional Monitoring Program for Trace Substances | San Francisco Estuary Institute | 2000 | HTML PDF | RMP |
| 1998 Pulse of the Estuary | San Francisco Estuary Institute | 2000 | PDF HTML | RMP |
| 1999 Annual Results: San Francisco Estuary Regional Monitoring Program for Trace Substances | San Francisco Estuary Institute | 2001 | HTML PDF | RMP |
| 1999 Pulse of the Estuary | San Francisco Estuary Institute | 2001 | RMP | |
| 1999 Quality Assurance Project Plan for the Regional Monitoring Program for Trace Substances | Lowe, S.; Hoenicke, R.; Davis, J. A.; Scelfo, G. | 1999 | HTML PDF | RMP |
| 2000 Annual Results: San Francisco Estuary Regional Monitoring Program for Trace Substances | San Francisco Estuary Institute | 2002 | HTML | RMP |
| 2000 Pulse of the Estuary | San Francisco Estuary Institute | 2002 | RMP | |
| 2001 Annual Results: San Francisco Estuary Regional Monitoring Program for Trace Substances | San Francisco Estuary Institute | 2003 | HTML | RMP |
| 2002 Annual Results | San Francisco Estuary Institute | 2004 | HTML | RMP |
| 2003 Annual Meeting Presentations of the Regional Monitoring Program for Trace Substances | San Francisco Estuary Institute | 2003 | HTML | RMP |
| 2003 Annual Results: San Francisco Estuary Regional Monitoring Program for Trace Substances | San Francisco Estuary Institute | 2005 | HTML | RMP |
| 2003 Pulse of the Estuary (Published 2003) | San Francisco Estuary Institute | 2003 | RMP | |
| 2004 Annual Meeting Presentations of the Regional Monitoring Program for Trace Substances | San Francisco Estuary Institute | 2004 | HTML | RMP |
| 2004 Pulse of the Estuary | San Francisco Estuary Institute | 2004 | HTML | RMP |
| 2004 RMP Program Plan | Davis, J. A. | 2004 | RMP | |
| 2006 RMP Annual Monitoring Results | San Francisco Estuary Institute | 2007 | RMP | |
| A Bay Area Watersheds Science Approach (Abstract) | Collins, L. M.; Collins, J. N.; Hoenicke, R.; Grossinger, R. M. | 1998 | WS | |
| A First-Order Mass Budget for Methylmercury in San Francisco Bay, CA. | Yee, D.; McKee, L. J .; Oram, J. J. | 2008 | ||
| A Geographic History of the San Lorenzo Creek Watershed: Landscape Patterns Underlying Human Activities (w / 8.5x11 or 11 x 17 map) | Grossinger, R. M.; Brewster, E. | 2003 | PDF PDF | HEP WS |
| A Legacy of Contaminants in SF Bay and Wetland Cores | Yee, D.; Hammond, D.; Heim, W.; Rattonetti, T.; van Bergen, S. | 2009 | RMP | |
| A Mass Budget of Polybrominated Diphenyl Ethers in San Francisco Bay, CA. | Oram, J. J.; McKee, L. J.; Werme, C.; Connor, M. S.; Oros, D.; Rodigari, F.; Grace, R. | 2008 | RMP | |
| A Methylmercury Budget for San Francisco Bay | Yee, D. | 2008 | PPT | RMP |
| A PAH Fate Model for San Francisco Bay | Greenfield, B. K.; Davis, J. A. | 2004 | RMP | |
| A Proposed Lentic Benthic Bioassessment Procedure for California (Protocol Brief for Biological Sampling in Lakes, Reservoirs, and Ponds) | Hayworth, J. | 2004 | APMP | |
| A Rapid Assessment Survey of Nonindigenous Species in the Shallow Waters of Puget Sound | Cohen, A. N.; Mills, C.; Berry, H.; Wonham, M.; Bingham, B.; Bookheim, B.; Carlton, J.; Chapman, J.; Cordell, J.; Harris, L.; Klinger, T.; Kohn, A.; Lambert, C. C.; Lambert, G.; Li, K.; Secord, D.; Toft, J. | 1998 | BI | |
| A Review of Factors Influencing Measurements of Decadal Variations in Metal Contamination in San Francisco Bay, California | Flegal, R.; Conaway, C.; Scelfo, G.; Hibdon, S.; Sanudo-Wilhelmy, S. | 2005 | RMP | |
| A Sediment Budget for Two Reaches of Alameda Creek | Bigelow, P.; Pearce, S.; McKee, L. J.; Gilbreath, A. N. | 2008 | WS | |
| A Sediment Budget for Two Reaches of Alameda Creek: support for flood control channel management | Pearce, S.; Bigelow, P.; McKee, L .J.; Gilbreath, A. | 2009 | WS | |
| A Simple Mass Balance Model for PAH Fate in the San Francisco Estuary | Greenfield, B. K.; Davis, J. A. | 2004 | RMP | |
| A Survey of User Needs for Data Relating to Environmental and Water Quality in the San Francisco Estuary | Kramer, K. S.; Phillips, J. H. | 1988 | AHI | |
| A Very Brief Overview on The Histories of Some Marin County Creeks (Transcript) | Collins, J. N. | 1995 | WL | |
| A Watershed Monitoring Strategy for Napa County | Hoenicke, R.; Hayworth, J. | 2005 | WS | |
| A Watershed Year for RMP & CEP: Sources Pathways & Loadings 2002/2003 | McKee, L. J.; Leatherbarrow, J. | 2003 | PPT | RMP |
| A Workshop on Toxicity Identification Evaluation (TIE's) in the San Francisco Bay Region: Lessons Learned | San Francisco Bay-Delta Aquatic Habitat Institute | 1993 | AHI | |
| A mass balance model for the fate of PAHs in the San Francisco Estuary | Greenfield, B. K.; Davis, J. A. | 2003 | PPT | RMP |
| A new research program on non-chemical pest control in California waters | Greenfield, B. K.; David, N.; Siemering, G. | 2003 | APMP CMR | |
| A review of Zebra Mussels' Environmental Requirements | Cohen, A. N.; CA Department of Water Resources | 2005 | BI | |
| A review of total dissolved copper and its chemical speciation in San Francisco Bay, California | Buck, K. N.; Ross, J. R. M; Flegal, A. R.; Bruland, K. W. | 2007 | RMP | |
| A review of urban runoff processes in the Bay Area: Existing knowledge, conceptual models, and monitoring recommendations | McKee, L. J.; Leatherbarrow, J.; Newland, S.; Davis, J. A. | 2003 | RMP | |
| APMP Alternatives Program Executive Summary | Greenfield, B. K. | 2004 | APMP CMR | |
| APMP Alternatives Program Executive Summary | Greenfield, B. K. | 2004 | APMP | |
| Accelerating invasion rate in a highly invaded estuary | Cohen, A. N.; Carlton, J. T. | 1998 | BI | |
| Adapting an ambient monitoring program to the challenge of managing emerging pollutants in the San Francisco estuary | Hoenicke, R.; Oros, D. R.; Oram, J. J.; Taberski, K. M. | 2007 | RMP | |
| Advances in Understanding of Loads of Mercury and Other Pollutants to the Bay | McKee, L. J. | 2008 | PPT | RMP |
| Agricultural Drainage through the Grassland Bypass Project | David, N.; Eacock, M. C. S.; McGahan, J. C.; Beckon, W. N. | 2008 | ||
| Alameda Creek Sediment Forum | McKee, L. J.; Gilbreath, A. N.; Pearce, S.; Bigelow, P.; Collins, J.; Ridolfi, K. | 2008 | HTML | WS |
| Aligning Socio-Economic and Ecological Condition Valuation | Hoenicke, R.; Collins, J. N. | 2007 | WS | |
| Alternate and New Brominated Flame Retardants Detected in US House Dust | Stapleton, H.; Allen, J; Kelly, S.; Konstantinov, A.; Klosterhaus, S.; McClean, M.; Webster, T. | 2008 | HTML PDF | RMP |
| Ambient Survey of Intertidal Ecological Health and Stressors | Collins, J. N.; Wittner, E.; Grosso, C. S.; Stralberg, D.; Sutula, M. | 2003 | WL | |
| An Assessment of The Loading of Toxic Contaminants to The San Francisco-Bay Delta: Executive Summary | Gunther, A.; Davis, J. A.; Phillips, D. J. H. | 1987 | AHI | |
| An Assessment of The Loading of Toxic Contaminants to The San Francisco-Bay Delta: Full Report | Gunther, A.; Davis, J. A.; Phillips, D. J. H. | 1987 | AHI | |
| An Exotic Species Detection Program for Puget Sound | Cohen, A. N. | 2004 | BI | |
| An Exotic Species Detection Program for Tillamook Bay | Cohen, A. N. | 2004 | BI | |
| An Exotic Species Detection Program for the Lower Columbia River Estuary | Cohen, A. N. | 2004 | BI | |
| An Integrated Wetlands Assessment Program for the San Francisco Bay Area and California | Grenier, J. L.; Featherston T.; Grosso, C. S.; Larned, K.; May, M.; Hoenicke, R.; Collins, J.; Clark, R.; Breaux A.; Potter, C.; Wheetly, M.; Stein, E.; Sutula, M.; Fetscher, B. | 2005 | HTML | WL |
| An Introduction to the San Francisco Estuary | Cohen, A. N. | 2001 | BI | |
| An Overview of Contaminant-Related Issues Identified by Monitoring in San Francisco Bay - Abstract | Thompson, B.; Hoenicke, R.; Davis, J. A.; Gunther, A. | 1999 | HTML | RMP |
| An Overview of the Expected Physical Relationships between the Intertidal and Shallow Bay Zones of the San Francisco Estuary (Transcript) | Collins, J. N. | 2001 | WL | |
| An overview of contaminant-related issues identified by monitoring in San Francisco Bay | Thompson, B.; Hoenicke, R.; Davis, J. A.; Gunther, A. | 2000 | HTML | RMP |
| Analysis of Reference Tidal Channel Plan Form for the Montezuma Wetlands Restoration Project | Pearce, S.; Collins, J. N. | 2004 | WL | |
| Appendix 1: All Deliverables Submitted for the Critical Coastal Areas Program, Phase I | Ridolfi, K. | 2007 | HTML PDF | WS |
| Aquatic Pesticide Monitoring Program Literature Review | Siemering, G.; David, N.; Hayworth, J.; Franz, A.; Malamud-Roam, F. | 2003 | APMP | |
| Aquatic Pesticide Monitoring Program Modeling Workgroup Final Report | Wadley, A.; Hunt, J.; Young, T.; Malamud-Roam, K.; Oros, D. | 2003 | APMP | |
| Aquatic Pesticides Alternatives Demonstration Project Report | Blankinship and Associates, Davis, CA; Contra Costa County Public Works Department, Martinez, CA; Marin Municipal Water District, Corte Madera, CA; Reclamation District 999, Clarksburg, CA; San Francisco Estuary Institute | 2004 | APMP | |
| Aquatic Pesticides Alternatives Executive Summary | Greenfield, B. K. | 2004 | APMP | |
| Aquatic Pesticides Alternatives Literature Review, Review of Alternative Aquatic Pest Control Methods For California Waters | David, N.; Greenfield, B. K.; Hunt, J.; Siemering, G.; Wittmann, M. | 2004 | APMP | |
| Aquatic Pesticides Monitoring Program Monitoring Project Final Report | Siemering, G. | 2005 | APMP | |
| Aquatic Pesticides Monitoring Program Nonchemical Alternatives Year 3 Final Report | Greenfield, B. K.; David, N.; Siemering, G.; McNabb, T. P.; Spencer, D. F.; Ksander, G. G.; Donovan, M. J.; Liow, P. S.; Chan, W. K.; Shonkoff, S. B.; Andrews, S.; Howard, V.; Sytsma, M. | 2005 | APMP | |
| Aquatic Pesticides Monitoring Program Phase 2 (2003) Monitoring Project Report | Siemering, G. | 2004 | APMP | |
| Aquatic Pesticides Monitoring Program Phase 3 (2004) Monitoring Project Report | Siemering, G.; Hayworth, J.; Melwani, A. R.; Crane, D.; Mekebri, A.; Blondina, G.; Schlenk, D.; Xie, L.; Irwin, M. A.; Berry, K.; Greenfield, B. K.; Thrippleton, K. | 2004 | APMP | |
| Aquatic Pesticides Monitoring Program Phase 3 (2005) Bioassessment of Waterbodies Treated With Aquatic Pesticides | Hayworth, J.; Melwani, A. R. | 2005 | APMP | |
| Aquatic Pesticides Monitoring Program Quality Assurance Program Plan | Yee, D.; Siemering, G.; Hayworth, J.; Oros, D. R.; Lowe, S.; Davis, J. A. | 2004 | APMP | |
| Aquatics Herbicides: Overview of Usage, Fate and Transport, Potential Environmental Risk, and Future Recommendations for the Sacramento-San Joaquin Delta and Central Valley | Siemering, G.; Hayworth, J. | 2005 | CMR | |
| Asian Kelp Undaria pinnatifida in the northeastern Pacific Ocean | Silva, P.; Woodlield, R.; Cohen, A. N.; Harris, L. H.; Goddard, J. | 2002 | BI | |
| Assessing Ecological Potential in an Urbanized Coastal Ecosystem: Methods and Findings from Historical Research in the San Francisco Bay Area (Abstract for Southern California Wetlands Recovery Project Conference 2002) | Grossinger, R. M. | 2002 | HEP | |
| Assessment of Macrobenthos Response to Sediment Contamination in the San Francisco Estuary (published in Environmental Toxicology and Chemistry) | Thompson, B.; Lowe, S. | 2004 | Link | CMR |
| Assessment of Potential Aquatic Herbicide Impacts to California Aquatic Ecosystems. | Siemering, G.; Hayworth, J. D.; Greenfield, B. K. | 2008 | CMR APMP | |
| Assessment of macrobenthos resonse to sediment contamination in the San Francisco Estuary, USA | Thompson, B. E.; Lowe, S. | 2004 | CMR | |
| Atmospheric Concentrations and Fluxes of Organic Compounds in the Northern San Francisco Estuary | Tsai, P.; Hoenicke, R.; Yee, D. | 2002 | HTML | RMP |
| B aylands Ecosystem Habitat Goals: Report on the Process to Set Regional Goals for Wetlands Restoration in the San Francisco Bay Area (Abstract) | Collins, J. N. | 1998 | WL | |
| Ballast Water Discharge Standards: Report and Recommendation of the California Advisory Panel on Ballast Water Performance Standards. | Holmes, M.; Bolland, D.; Cohen, A. N.; Fox, A.; Herod, J.; Jennings, W.; Moore, S.; Newkirk, S.; Ruiz, G.; Simkanin, C.; Talley, D.; Ward, K. | 2005 | BI | |
| Basic Regional Spatial Analysis of Non - Indigenous Invasive Species (NIS) Spartina Invasions in the San Francisco Estuary | Collins, J. N.; May, M. | 2001 | WL | |
| Bay Area Base Map of Aquatic Habitats | Klatt, M.; Cayce, K.; Williams, M.; Collins, J. N. | 2009 | WL | |
| Bay Area Watersheds Science Approach | San Francisco Estuary Institute | 1998 | WS | |
| Bay Area Wetlands Ecosystem Goals Project: Bay Area Wetland Project Map | Collins, J. N.; Siegel, S.; Stralberg, D. | 2003 | WL | |
| Bay Area Wetlands Ecosystem Goals Project: Draft Functional Correspondence between Past and Present Key Habitats | Collins, J. N. | 1998 | WL | |
| Bay Area Wetlands Ecosystem Goals Project: Focus Team Orientation Package | Collins, J. N.; Monroe, M.; Wilcox, C.; Olofson, P. | 1995 | WL | |
| Bay Area Wetlands Ecosystem Goals Project: Focus Team Orientation Talking Points | Collins, J. N. | 1995 | WL | |
| Bay Area Wetlands Ecosystem Goals Project: Key Baylands Habitats | Collins, J. N. | 1998 | WL | |
| Bay Area Wetlands Ecosystem Goals Project: Key Baylands Species | Collins, J. N. | 1998 | WL | |
| Bay Area Wetlands Ecosystem Goals Project: Starting Considerations | Collins, J. N. | 1995 | WL | |
| Bay Area Wetlands Regional Monitoring Program (Abstract, SOE 2001) | Collins, J. N.; Jones, P. | 2001 | WL | |
| Baylands Ecosystem Habitat Goals | Monroe, M.; Olofson, P. R.; Collins, J. N.; Grossinger, R. M.; Haltiner, J.; Wilcox, C. | 1999 | WL | |
| Baylands Ecosystem Habitat Goals Report | San Francisco Estuary Institute | 1999 | HTML | WL |
| Baylands Vegetation Mapping Protocol (Version 1.0) | Collins, J. N.; Stralberg, D. | 2004 | WL | |
| Baylands and Creeks of South San Francisco Bay | Grossinger, R. M.; Askevold, R. A. | 2005 | HEP | |
| Benefits of the RMP and Challenges for the Future (2003 RMP Annual Meeting) | Tucker, D. | 2003 | PPT | RMP |
| Benefits of the RMP and Challenges for the Future: Scientific Community Perspective | Gunther, A. J. | 2003 | PPT | RMP |
| Benefits of the Redesigned RMP to Regional Board Decision Making | Taberski, K. | 2002 | PPT | RMP |
| Best Management Practices in Stone Fruit Project | David, N. | 2009 | WS | |
| Bioaccumulation Of Pollutants In California Waters: A Review Of Historic Data And Assessment Of Impacts On Fishing And Aquatic Life | Davis, J.A.; Grenier, J. L.; Melwani, A. R.; Bezalel, S. N.; Letteney, E. M.; Zhang, E. J.; Odaya, M. | 2008 | Link Link | CMR |
| Bioaccumulation of Contaminants by Transplanted Bivalves in the San Francisco Estuary: Status and Trends | Davis, J. A.; Haskins, J.; Hoenicke, R.; Thompson, B. | 1996 | HTML | CMR |
| Biological Effects of Anthropogenic Contaminants in the San Francisco Estuary | Thompson, B.; Adelsbach, T.; Brown, C.; Hunt, J.; Kuwabara, J.; Neale, J.; Ohlendorf, H.; Schwarzbach, S.; Spies, R. M.; Taberski, K. M. | 2007 | RMP | |
| Biological Invasions in Aquatic Ecosystems: Impacts on Restoration and Potential for Control | Cohen, A. N.; Webb, S. K. | 1998 | BI | |
| Biological Study Nonindigenous Aquatic Species in a United States Estuary: A Case Study of the Biological Invasions of the San Francisco Bay and Delta | Carlton, J.; Cohen, A. N. | 1995 | HTML | BI |
| Biological Warfare. MetroNews (5-1-97) | Weir, C. | 1997 | HTML | BI |
| Biological invasions and opportunities for their regulation on the west coast of the United States. | Cohen, A. N.; Cassell, J. L.; Olin, P. G. | 1998 | BI | |
| Biological invasions in the estuary | Cohen, A. N. | 1997 | BI | |
| Bridging Divides: Maritime Canals as Invasion Corridors | Gollasch, S.; Galil, B. S.; Cohen, A. N. | 2006 | Link | BI |
| Brief Overview of Historical Suisun Tidal Marsh Form and Ecological Function with Notes on Restoration Science (Transcript) | Collins, J. N. | 1997 | WL | |
| Briefing Paper on a Monitoring Plan for Nonindigenous Organisms in the San Francisco Bay/Delta Estuary | Cohen, A. N. | 1999 | BI | |
| CISNet San Pablo Bay Network of Environmental Stress Indicators; Benthic Microfauna. | Thompson, B.; Lowe, S.; Ross, J. R. M. | 2003 | HTML | CMR |
| CRAM Evaluation of Wetland Conditions | Collins, J. N. | 2007 | WL | |
| CRAM: Synopsis of first CRAM Core Team meeting | Collins, J. N. | 2003 | WL | |
| Calibration and evaluation of five indicators of benthic community condition in two California bay and estuary habitats | Ranasinghe, J. A.; Weisberg, S. B.; Smith, R. W.; Montagne, D. E.; Thompson, B.; Oakden, J. M.; Huff, D. D.; Cadien, D. B.; Velarde, R.G.; Ritter, K. J. | 2009 | Link PDF | CMR |
| Californias Statewide Survey Of Tidal Wetland Condition | Collins, J.; Sutula, M.; Williams, M.; Clark, R.; Roberts, C.; Stein, E.; Grosso, C.; Wiskind, A.; Solek, C.; May, M.; O' Connor, K.; Fetscher, E; Grenier, J .L.; Pearce, S.; Robinson, A.; Clark, C.; Rey, K.; Morrissette, S.; Eicher, A.; Pasquinelli, R.; Ritter, K.; Ross, J. | 2009 | WL | |
| California Bay-Delta Authority Fish Mercury Project, Year 2 (2006) Annual Report. Sport Fish Sampling and Analysis | Melwani, A. R.; Bezalel, S.; Hunt, J. A.; Grenier, J. L.; Hunt, J. A.; Robinson, A. H; Davis, J. | 2007 | CMR | |
| California Rapid Assessment Method (CRAM) - Part 1 | Collins, J. N. | 2003 | PPT | WL |
| California Rapid Assessment Method (CRAM) - Part 2 | Collins, J. N. | 2003 | PPT | WL |
| California Rapid Assessment Method (CRAM) Fact Sheet, Level 2, State version | San Francisco Estuary Institute | 2008 | WL | |
| California and the World Ocean 2002 (Abstract for Session on California Coastal Wetlands Issues) | Collins, J. N. | 2002 | WL | |
| California's Response to the Zebra/Quagga Mussel Invasion in the West. Recommendations of the California Science Advisory Panel, for the California Incident Command (California Department of Fish and Game, California Department of Water Resources, U.S. Fish and Wildlife Service, California Department of Food and Agriculture, and California Department of Boating and Waterways) | Cohen, A. N.; Moll, R.; Carlton, J. T.; O'Neil, Jr.,C. R.; Anderson, L.; Moyle, P. B. | 2007 | BI | |
| Castro Valley Atmospheric Deposition Study | Yee, D.; Franz, A. | 2005 | CMR | |
| Causes of Sediment Toxicity to Mytilus galloprovincialis in San Francisco Bay, California | Phillips, B. M.; Anderson, B. S.; Hunt, J. W.; Thompson, B.; Lowe, S.; Hoenicke, R.; Tjeerdema, R. | 2003 | Link | RMP |
| Causes of Sediment Toxicity to Mytilus galloprovincialis in San Francisco Bay, California (link to abstract of article published in Archives of Environmental Contamination and Toxicology) | Phillips, B.; Anderson, B.; Hoenicke, R.; Hunt, J.; Lowe, S.; Phillips, B.; Thompson, B.; Tjeerdema, R. | 2003 | Link | CMR |
| Changing Delta Geometry and Ecology: The Effects of Historical Landscape Modification on Water Quality and Ecosystem Structure in Suisun Marsh and Delta | Grossinger, R. M.; Collins, J. N.; Enright, C.; Culberson, S.; Mueller-Solger, A. | 2005 | HEP | |
| Channel Geomorphology Assessment: A component of the watershed management plan for the Carneros Creek watershed, Napa County, California | Pearce, S.; O' Connor, M.; McKee, L. J.; Jones, B. | 2003 | WS | |
| Channel Geomorphology Assessment: A component of the watershed management plan for the Sulphur Creek watershed, Napa County, California | Pearce, S.; O'Connor, M.; McKee, L. J.; Jones, B. | 2003 | WS | |
| Characterization of Organophosphorus Chemicals in a PentaBDE Replacement Mixture and their Detection in Biosolids | Klosterhaus, S. | 2009 | RMP | |
| Characterization of mercury concentrations in suspended sediment loads in Guadalupe River and Coyote Creek, San Jose, California: Can TMDL targets be met? | McKee, L. J.; Leatherbarrow, J. | 2005 | HTML | WS |
| Characterization of the brominated chemicals in a PentaBDE replacement mixture and their detection in biosolids collected from two San Francisco Bay Area Waste water treatment plants | Klosterhaus, S.; Stapleton, H.; Konstantinov, A. | 2008 | RMP | |
| Characterizing Sediment Contamination and Potential Ecological Effects in Six Tributaries of the San Francisco Bay Estuary | Lowe, S.; Anderson, B.; Phillips, B.; Grosso, C. S.; Ross, J. R. M.; Franz, A.; Stevanovic, P.; Yee, D. | 2006 | RMP | |
| Chinese mitten crabs in North America | Cohen, A. N. | 1995 | BI | |
| Choosing a Future Bay: The Long - Term Fate of PCBs and Other Organics | Davis, J. A.; Greenfield, B. K.; Leatherbarrow, J.; David, N. | 2003 | PPT | RMP |
| Choosing the Best Map: Availability, Accuracy, and Accountability (Abstract) | Der, Z.; Grossinger, R. M.; Wong, C.; Collins, J. N. | 2005 | WL | |
| Cisnet Technical Report: Contaminant Accumulation In Eggs of Double-Crested Cormorants and Song Sparrows In San Pablo Bay | Davis, J. A.; Greenfield, B. K.; Ross, J. R. M.; Crane, D.; Ichikawa, G.; Negrey, J.; Spautz, H.; Nur, N. | 2004 | RMP | |
| Cisnet Technical Report: Contaminant Accumulation in Forage Fish | Davis, J.A.; Ross, J. R. M.; Fairey, R.; Roberts, C.; Ichikawa, G.; Negrey, J.; Crane, D. | 2004 | RMP | |
| Combating Bio-Invaders (radio program). NPR's Living on Earth (11-12-99) | Cohen, A. N. | 1999 | HTML | BI |
| Comments on the Intersection of Land, Water, and People (Transcript) | Collins, J. N. | 1998 | WL | |
| Comparison o Agricultural Run-off between Biological Farming and Conventional Chemical Farming | David, N.; Thomas, F.; Gibbs, M. | 2007 | WS | |
| Comparison of Agricultural Run-off between Biological Farming and Conventional Chemical Farming | David, N.; Thomas, F.; Gibbs, M. | 2007 | WS | |
| Comparison of Agricultural Runoff between Organic Farming and Conventional Chemical Farming | David, N. | 2009 | WS | |
| Comparison of Methods to Map California Riparian Areas | Collins, J.; Sutula, M.; Stein, E.; Odaya, M.; Zhang, E.; Larned, K. | 2006 | WL | |
| Concentrations and Loads of Mercury, PCBs and PBDEs in the Lower Guadalupe River, San Jose, California: Water Years 2003, 2004, and 2005. | McKee, L. J.; Oram, J. J.; Leatherbarrow, J.; Bonnema, A.; Heim, W.; Stephenson, M. | 2006 | WS | |
| Concentrations and loads of mercury, PCBs, and OC pesticides in the lower Guadalupe River, San Jose, California: Water Years 2003 and 2004 | McKee, L. J.; Leatherbarrow, J.; Oram, J. J. | 2005 | WS | |
| Concentratons and Loads of Organic Contaminants and Mercury associated with Suspended Sediment Discharged to San Francisco Bay from the Sacramento-San Joaquin River Delta, CA | Leatherbarrow, J.; McKee, L. J.; Schoelhammer, D.; Ganju, N.; Flegal, A. R | 2005 | RMP | |
| Conceptual Framework and Rationale for the Exposure and Effects Pilot Study | Hunt, J.; Davis, J. A.; Lowe, S.; Thompson, B.; Anderson, B. | 2004 | RMP | |
| Conceptual Modeling of the Major Factors Controlling the Sources, Fate, and Effects of Persistent Organic Pollutants in the Estuary | Connor, M.; Davis, J. A.; Leatherbarrow, J.; Yee, D.; Oros, D.; Ross, J. R. M.; Werme, C. | 2003 | CMR | |
| Contaminant Concentrations in Fish from San Francisco Bay, 1997 | Davis, J. A.; May, M. D.; Wainwright, S. E.; Fairey, R.; Roberts, C.; Ichikawa, G.; Tjeerdema, R.; Stoelting, M.; Becker, J.; Petreas, M.; Mok, M.; McKinney, M.; Taberski, K. | 1997 | HTML PDF | RMP |
| Contaminant Concentrations in Fish from San Francisco Bay, 2000 | Greenfield, B. K.; Davis, J. A.; Fairey, R.; Roberts, C.; Crane, D.B.; Ichicawa, G.; Petreas, M. | 2000 | HTML PDF | RMP |
| Contaminant Concentrations in Fish from San Francisco Bay, 2000 | Greenfield, B. K.; Davis, J. A.; Fairey, R.; Roberts, C.; Crane, D. B.; Ichikawa, G.; Petreas, M. | 2003 | HTML PDF | RMP |
| Contaminant Concentrations in Fish from the Sacramento - San Joaquin Delta and Lower San Joaquin River, 1998 | Davis, J. A.; May, M.; Ichikawa, G.; Crane, D. | 2000 | RMP | |
| Contaminant Concentrations in Fish: 2000 (2002 RMP Annual Meeting) | Davis, J. A.; Greenfield, B. K. | 2000 | PDF PPT | RMP |
| Contaminant Concentrations in Sport Fish from San Francisco Bay, 2006 | Hunt, J. A.; Davis, J. A.; Greenfield, B. K.; Melwani, A. R.; Fairey, R.; Sigala, M.; Crane, D.; Regalado, K.; Bonnema, A. | 2008 | RMP | |
| Contaminant Loads from Stormwater to Coastal Waters in the San Francisco Bay Region: Comparison to Other Pathways and Recommended Approach for Future Evaluation | Davis, J. A.; McKee, L. J.; Leatherbarrow, J. E.; Daum, T. | 2000 | HTML PDF | CMR |
| Contaminant concentrations in Delta fish | Greenfield, B. K. | 2001 | RMP | |
| Contaminant concentrations in fish: 2000 | Greenfield, B. K.; Davis, J. A. | 2002 | RMP | |
| Contaminant concentrations in fish: 2000 (Oral Presentation) | Greenfield, B. K.; Davis, J. A. | 2002 | PDF PPT | RMP |
| Contaminants Concentrations in Fish from San Francisco Bay, 1997 | Davis, J. A.; May, M. D.; Wainwright, S. E.; Fairey, R.; Roberts, C.; Ichikawa, G.; Tjeerdema, R.; Stoelting, M.; Becker, J.; Petreas, M.; Mok, M.; McKinney, M.; Taberski, K. | 1999 | HTML PDF | RMP |
| Contaminants at the Estuary Interface | Leatherbarrow, J.; Hoenicke, R.; McKee, L. J. | 2002 | PPT | RMP |
| Contaminants in Sport Fish of California lakes and reservoirs | Davis, J.A.; Melwani, A.R.; Bezalel, S.N.; Hunt, J.A.; Ichikawa, G.; Bonnema, A.; Lamerdin, C.; Heim, W.; Crane, D.; Stephenson, M. | 2008 | ||
| Contamination Concentrations in Fish from San Francisco Bay, 2003 | Davis, J.; Hunt, J.; Greenfield, B. K.; Fairey, R.; Sigala, M.; Crane, D.; Regalado, K.; Bonnema, A. | 2006 | RMP | |
| Contrasting Fluvial Geometric Proceses and Historic Change Through Time: Supporting Watershed Management in Tributaries of the Napa River Watershed (poster) | Pearce, S.; Grossinger, R. M.; O'Connor, M.; McKee, L. J. | 2003 | WS | |
| Control costs, operation, and permitting issues for non-chemical plant control: case studies in the San Francisco Bay-Delta Region, California. | Greenfield, B. K.; Blankinship, M.; McNabb, T. P. | 2006 | APMP | |
| Control of Agricultural Drainage Water and Restoration of Wetland Water Supply Channels | David, N.; Eacock, C.; McGahan, J.; Beckon, W. | 2005 | CMR | |
| Cool New Tools for Accessing RMP Data | Oram, J. J. | 2008 | RMP | |
| Copper and Nickel Impairment Assessment (2002 RMP Annual Meeting) | Grovhoug, T.; Hall, T.; Olivieri, E.; Walker, L. | 2002 | PPT | RMP |
| Copper and Nickel TMDL Development: Lower South Bay (2002 RMP Annual Meeting) | Tetra Tech. Inc. | 2002 | PPT | RMP |
| Coyote Creek Watershed Historical Ecology Study: Historical Conditions and Landscape Change in the Estern Santa Clara Valley, California | Grossinger, R. M.; Askevold, R. A.; Striplen. C. J.; Brewster, E.; Pearce, S.; Larned, K.; McKee, L. J.; Collins, J. N. | 2006 | HTML | HEP |
| Coyote Hills Area Habitat Conceptual Planning for 2002-03 | Collins, J. N. | 2002-2003 | WL | |
| Coyote Hills Historic Baylands | Collins, J. N. | 2001 | PPT | WL |
| Coyote Hills Wetland Enhancement and Drainage Improvement (Project Summary Outline) | Baker, R.; Ackerman, H.; Wolin, F.; DiDonato, J.; Kent, J.; Collins, J. N. | 2003 | WL | |
| Crissy Field Monitoring Technical Review Team (Project Description) | Collins, J. N. | 2002 | WL | |
| Critical Coastal Areas Program, Phase I Final Report | Ridolfi, K.; Hoenicke, R.; Van Velsor, K. | 2007 | HTML PDF | WS |
| Current Regulatory Approach to Copper in San Francisco Bay: Source Control, Pollution Prevention, and Monitoring | Looker, R. | 2002 | PPT | RMP |
| Cyanobacterial Populations in San Francisco Bay | Palenik, B.; Flegal, R. A. | 1999 | HTML PDF | RMP |
| DELTA RMP: Developing a Delta Regional Monitoring Program for Contaminants | Jabusch, T. W.; Ballard, A. | 2009 | ||
| Data Collection Protocol Distribution, Abundance, and Treatment of Non-indigenous Speicies of Cordgrass in the San Francisco Estuary | Collins, J. N.; May, M.; Smith, D.; Klohr, S.; Zaremba, K. | 2002 | WL | |
| Decadal mercury trends in San Francisco Estuary sediments | Conaway, C. H.; Ross, J. R. M.; Looker, R.; Mason, R. P.; Flegal, A. R. | 2007 | RMP | |
| Determining Economic Impacts of Aquatic Plant Management in California Waters | Mann, R.; Wittmann, M. | 2004 | APMP | |
| Determining Loads and Trends in Small Tributaries | McKee, L. J. | 2001 | WS | |
| Determining the Spatial Distribution of Water and Sediment Sampling Locations | Stevens, D. | 2002 | PPT | RMP |
| Developing Tools to Help Protect and Manage California Wetlands, Streams, and Riparian Resources | Collins, J. N.; Grenier, J. L.; Sutula, M. | 2008 | Link | WL |
| Developing Water Quality Solutions for San Francisco Bay | Whyte, D. | 2003 | PPT | RMP |
| Development of Environmental Indicators of the Condition of San Francisco Estuary | Thompson, B.; Gunther, A. | 2004 | CMR | |
| Development of an environmental indicator system for watershed-based decision-making and tracking the outcomes of beneficial use restoration in the San Joaquin River basin | Jabusch, T. W.; Swanson, T.; Pawley, A.; Hoenicke, R. | 2008 | WS | |
| Development of the Wetlands Regional Monitoring Program for the San Francisco Estuary | San Francisco Estuary Institute | 2002 | WL | |
| Dioxins in San Francisco Bay: Conceptual Model/Impairment Assessment | Connor, M.; Yee, D.; Davis, J. A.; Werme, C. | 2004 | CMR | |
| Dissipation of penoxsulam, a new sulfonamide herbicide, in simulated rice field conditions | Jabusch, T. W.; Tjeerdema, R. S. | 2005 | CMR | |
| Documenting Local Landscape Change: The Bay Area Historical Ecology Project | Grossinger, R. M.; Egan, D.; Howell, E. A. | 2005 | HTML | HEP |
| Does shredding water hyacinths affect mercury speciation? | Hua, M.; Rajan, M.; Hackett, A.; Darrow, J.; Andrews, J. C.; Greenfield, B. K. | 2004 | APMP CMR | |
| Draft Guidelines for Developing the CRAM Metrics | Collins, J. N. | 2003 | WL | |
| Draft RMP Data Interpretation Policy | San Francisco Estuary Institute | 2000 | HTML | RMP |
| Dredging Impacts on Food-Web Bioaccumulation of DDTs in San Francisco Bay, CA | Oram, J. J.; Melwani, A. R. | 2006 | RMP | |
| Dredging and Sediment Management in San Francisco Bay | Goldbeck, S. | 2008 | PPT | RMP |
| EcoAtlas Baylands Maps | San Francisco Estuary Institute | 1998 | HTML | HEP WL |
| Ecological Connections between Baylands and Uplands: Examples from Marin County | Collins, J.; Didonato, J.; Geupel, G.; Grenier, J. L.; Kucera, T.; Lidicker, B.; Rainey, B.; Rottenborn, S. | 2007 | WL HEP | |
| Ecological, Geomorphic, and Land Use History of Carneros Creek Watershed: A component of the watershed management plan for the Carneros Creek watershed, Napa County, California | Grossinger, R. M.; Striplen. C. J.; Brewster, E.; McKee, L. J. | 2004 | HEP WS | |
| Ecological, Geomorphic, and Land Use History of Sulphur Creek Watershed: A component of the watershed management plan for the Sulphur Creek watershed, Napa County, California. | Grossinger, R. M.; Striplen. C. J.; McKee, L. J.; Brewster, E. | 2004 | HEP WS | |
| Ecology, Assemblage Structure, DIstribution, and Status of Fishes in Streams Tributary to the San Francisco Estuary, California | Leidy, R. A. | 2007 | HTML | HEP WS |
| Effects of Short-term Water Quality Impacts Due to Dredging and Disposal on Sensitive Fish Species in San Francisco Bay | Jabusch, T. W.; Melwani, A. R.; Ridolfi, K.; Connor, M. | 2008 | CMR | |
| Effects of the Goals Project (Transcript) | Collins, J. N. | 1999 | WL | |
| Elkhorn Slough Tidal Marsh Plan: Possible Lessons from the Bay Area Wetland Ecosystem Goals Project (PowerPoint presentation) | Collins, J. N. | 2004 | PPT | WL |
| Emerging Problems. Progress on Identifying Contaminants of Concern | Klosterhaus, S. | 2007 | PPT | RMP |
| Environmental Data Management Evaluating Internal Performance | Grosso, C. S.; Ross, J. R. M.; Lowe, S.; Yee, D.; Franz, A.; Stevanovic, P. | 2007 | RMP | |
| Environmental Data Upload and Visualization Tools | Grosso, C.; Bezalel, S.; Oram, J. J.; Featherston, T.; Ross, J.; Sedlak, M.; Franz, A.; Lowe, S.; Yee, D. | 2009 | RMP | |
| Environmental threats to tidal marsh vertebrates of the San Francisco Bay Estuary | Takekawa, J. Y.; Woo, I.; Spautz, H.; Nur, N.; Grenier, J. L.; Malamud-Roam, K.; Nordby, J. C.; Cohen, A. N.; Malamud-Roam, F.; Wainwright-De La Cruz, S. E. | 2006 | BI WL | |
| Episodic Ambient Water Toxicity in the San Francisco Estuary | Ogle, S.; Gunther, A.; Salop, P.; Bell, D.; Cotsifas, J.; Gold, J. | 2002 | PPT | RMP |
| Episodic Toxicity in the San Francisco Bay System - 1999 | Ogle, S. R.; Gunther, A. | 1999 | HTML PDF | RMP |
| Episodic Toxicity in the San Francisco Bay System - 2000 | Ogle, S. R.; Gunther, A.; Salop, P.; Bell, D.; Cotsifas, J.; Gold, J. | 2000 | RMP | |
| Episodic global dispersal in shallow water marine organisms: The case history of the European shore crabs Carcinus maenas and Carcinus aestuarii | Carlton, J.; Cohen, A. N. | 2003 | BI | |
| Estimated Sediment Contaminant Concentrations Associated with Biological Impacts at San Diego Bay Cleanup Sites | Thompson, B.; Melwani, A. R.; Hunt, J. A. | 2009 | CMR | |
| Estimates of suspended sediment entering San Francisco Bay from the Sacramento and San Joaquin Delta, San Francisco Bay, California | McKee, L. J.; Ganju, N.; Schoellhamer, D. | 2006 | RMP | |
| Estimates of suspended-sediment flux entering San Francisco Bay from the Sacramento and San Joaquin Delta | McKee, L. J.; Ganju, N.; Schoellhamer, D.; Davis, J. A.; Yee, D.; Leatherbarrow, J.; Hoenicke, R. | 2002 | RMP | |
| Estimating sediment related contaminant loads entering San Francisco Bay from the Central Valley: A contribution to Region 2 and Region 5 TMDLs | McKee, L. J. | 2002 | WS | |
| Estimation of Means, Totals, and Distribution Functions from Probability Survey Data | Stevens, D. | 2002 | RMP | |
| Estimation of Total Mercury Fluxes Entering San Francisco Bay from the Sacramento and San Joaquin River Watersheds (Technical Memo) | McKee, L. J.; Foe, C. | 2002 | WS | |
| Estuarine Data Index: A Guide to Bay-Delta Research and Monitoring Programs, Volume 2 | Aquatic Habitat Institute | 1990 | AHI | |
| Estuarine Data Index: A Guide to Bay-Delta Research and Monitoring Programs, Volume I | Aquatic Habitat Institute | 1990 | AHI | |
| Estuarine Wetlands Restoration in the San Francisco Bay Area: the Roles of Not-for-Profits (Transcript) | Collins, J. N. | 2001 | WL | |
| Estuary Interface Pilot Study (1996 - 1999) | Leatherbarrow, J.; Hoenicke, R.; McKee, L. J. | 2002 | RMP | |
| Evaluating impacts of Lake Maid plant control | David, N.; Greenfield, B. K.; Siemering, G. S. | 2006 | APMP | |
| Evaluation of Benthic Assessment Methodology in Southern California Bays and San Francisco Bay | Ranasinghe, J. A.; Thompson, B.; Smith, R.; Lowe, S. | 2004 | CMR | |
| Evaluation of Turbidity and Turbidity Related Effects on the Biota of the San Francisco Bay-Delta Estuary | O'Connor, J. M. | 1991 | AHI | |
| Evaluation of water hyacinth survival and growth in the Sacramento Delta, California following cutting | Spencer, D. F.; Ksander, G. G.; Donovan, M. J.; Liow, P. S.; Chan, W. K.; Greenfield, B. K.; Shonkoff, S. B.; Andrews, S. P. | 2006 | CMR APMP | |
| Evolution and Natural Maintenance of Tidal Marshes in San Pablo Bay (Transcript) | Collins, J. N. | 1999 | WL | |
| Exchange and Integration of Monitoring Data to Address Management Questions at Multiple Scales | Grosso, C. S.; Ross, J. R. M.; Lowe, S. | 2008 | Link PDF | RMP |
| Executive Summary 2002 (Wetlands Science Program) | Collins, J. N. | 2002 | WL | |
| Executive Summary: SFEI Component of the Integrated Regional Wetlands Monitoring Pilot Project | Collins, J. N. | 2002 | WL | |
| Exotic Oyster Survey, Removal and Research in San Francisco Bay: Annual Progress Report | Cohen, A. N.; Weinstein, A. | 2008 | BI | |
| Exotic organisms; California's Emerging Environmental Challenges | Cohen, A. N. | 1998 | BI | |
| Extent and impacts of ballast water invasions | Cohen, A. N. | 1999 | BI | |
| Facilitating the Exchange and Reporting of Monitoring Data | Grosso, C. S.; Ross, J. R. M.; Lowe, S.; Yee, D.; Franz, A.; Stevanovic, P. | 2005 | HTML | RMP |
| Fate of Contaminants in Sediment of San Francisco Estuary: A Review of Literature and Data - Final Report | Leatherbarrow, J.; Ross, J. R. M.; David, N.; Yee, D. | 2005 | RMP | |
| Field Evaluations of Alternative Pest Control Methods in California Waters | San Francisco Estuary Institute (SFEI); Blankinship and Associates; Marin Municipal Water District; Reclamation District 999; and Contra Costa County Public Works Department; Greenfield, B.K. | 2004 | APMP | |
| Field Evaluations of Alternative Pest Control Methods in California Waters | San Francisco Estuary Institute; Blankinship and Associates; Marin Municipal Water District; Reclamation District 999; Contra Costa County Public Works Department | 2004 | APMP | |
| Field Sampling Manual for the RMP for Trace Substances (version 1, January 1999) | Bell, D.; Gold, J.; Salop, P. | 1999 | HTML | RMP |
| Field Sampling Manual for the Regional Monitoring Program for Trace Substances | David, N.; Bell, D.; Gold, J. | 2001 | RMP | |
| Final Draft Master List of NIS Plant Species | Collins, J. N. | 2001 | BI | |
| Final Project Report: Investigations of Sources and Effects of Pyrethroid Pesticides in Watersheds of the San Francisco Estuary | Lowe, S.; Anderson, B.; Phillips, B. | 2007 | CMR | |
| Final RMP Pilot/Special Study Selection Procedure (Approved October 16, 2000) | San Francisco Estuary Institute | 2000 | HTML | RMP |
| First Annual Report of the Montezuma Wetlands Restoration Project Technical Review Team | Collins, J. N.; Grosso, C. S. | 2004 | WL | |
| First evidence of conspecific brood parasitism in song sparrows with comments on methods sufficient to document this behavior | Latif, Q.; Grenier, J. L.; Heath, S.; Ballard, G.; Hauber, M. E. | 2006 | WL | |
| Fish mercury in the Bay-Delta watershed: a dark cloud with a silver lining | Davis, J. A.; Greenfield, B. K.; Ichikawa, G.; Stephenson, M. | 2004 | CMR | |
| Five-Year Program Review: Regional Monitoring Program for Trace Substances in the San Francisco Estuary | Boesch, D.; Cushman, R.; Crooks, W.; Mearns, A.; Metzger, S.; O'Connor, T.; Stewart-Oaten, A.; Bernstein, B.; O'Connor, J. | 1997 | HTML | RMP |
| Flamenco + Geo: extending a search interface based on hierarchical faceted metadata | Frontiera, P. | 2008 | ||
| Flamenco + Geo: extending a search interface based on hierarchical faceted metadata with geographic capabilities | Frontiera, P. | 2008 | Link | |
| Fluvial Geomorphology, Hydrology, and Riparian Habitat of La Honda Creek Along the Hwy 84 Transportation Corridor, San Mateo County, California | Pearce, S.; McKee, L. J.; Striplen. C. J. | 2004 | HTML | WS |
| Further Development of Chronic Ampelisca abdita Bioassay as an Indicator of Sediment Toxicity | wWeston, D. P. | 1996 | HTML PDF | RMP |
| Geographic Scope of the Wetlands Science Program | Collins, J. N. | 2002 | WL | |
| Geography Department Commencement Ceremonies, UC Berkeley, Keynote Address, May 2004: "Notes from Places Past and Future" | Grossinger, R. M. | 2004 | HTML PDF | HEP |
| Geography of Wetlands in the San Francisco Estuary (Transcript) | Collins, J. N.; Grossinger, R. M.; Der, Z.; Brewster, E. | 1996 | WL | |
| Geomorphic Processes and Salmonid Habitat in Sulphur and Carneros Creeks, Napa River Watershed, Napa County California (PowerPoint presentation) | Pearce, S.; O'Connor, M.; McKee, L. J.; Jones, B. | 2003 | WS | |
| Going Organic Project | David, N.; McKee, L .J. | 2009 | WS | |
| Grassland Bypass Project Report 2003 | Grassland Bypass Project Oversight Committee | 2005 | CMR | |
| Grassland Bypass Project Report 2004-2005 | Grassland Bypass Project Oversight Committee | 2008 | CMR | |
| Green Infill for Clean Stormwater | David, N.; McKee, L .J.; Krebs, Jennifer | 2009 | WS | |
| Guadalupe Watershed Model Support Tool for Regional Hg and PCBs Management | Lent, M.; Oram, J. J.; McKee, L .J. | 2009 | RMP | |
| Guadalupe Watershed Model. Phase: 1 Hydrology Model | Lent, M. A.; Oram, J. J.; McKee, L. J. | 2008 | RMP | |
| Have claw, will travel | Cohen, A. N. | 1997 | BI | |
| Hg L 3 XANES study of mercury methylation in shredded Eichhornia crassipes | Rajan, M.; Darrow, J.; Hua, M.; Barnett, B.; Mendoza, M.; Greenfield, B. K.; Andrews, J. C. | 2008 | CMR APMP | |
| Historic Drainage Patterns of the Alameda Watershed (Transcript) | Collins, J. N. | 2001 | WS | |
| Historical Ecology Informing Restoration in East Contra Costa County: Wetland Restoration Opportunities on a Tributary to Brushy Creek (Souza II Property) | Askevold, R.; Fateman, A.; Whipple, A.; Stanford, B.; Grossinger, R. M.; Kopchik, J. | 2009 | HEP | |
| Historical Ecology and Landscape Change of the San Gabriel River and Floodplain | Stein, E.; Dark, S.; Longcore, T.; Hall, N.; Beland, M.; Grossinger, R. M.; Casanova, J.; Sutula, M. | 2007 | HEP | |
| Historical Ecology at SFEI: Presentation to the SFEI Board of Directors | Grossinger, R. M. | 2003 | HEP | |
| Historical Ecology of Lower San Francisquito Creek Phase 1 | Hermstad, D.; Cayce, K.; Grossinger, R. M. | 2009 | HEP | |
| Historical Ecology of South Santa Clara County: Preliminary Findings. A Technical Memorandum to the Santa Clara Valley Habitat Conservation Plan/Natural Community Conservation Plan | Grossinger, R. M.; Striplen. C. J.; Askevold, R. A.; Beller, E. E.; Salomon, M. | 2007 | HEP | |
| Historical landscape ecology of an urbanized California valley: wetlands and woodlands in the Santa Clara Valley | Grossinger, R. M.; Striplen, C. J.; Askevold, R. A.; Brewster, E.; Beller, E. E. | 2007 | HEP | |
| Human influences on nitrogen and phosphorus concentrations in creek and river waters of the Napa and Sonoma watersheds, northern San Francisco Bay, California | McKee, L .J.; Krottje, P. | 2005 | WS | |
| Identification and evaluation of previously unknown organic contaminants in the San Francisco Estuary (1999-2001) | Oros, D. R. | 2003 | RMP | |
| Identification and evaluation of unidentified organic contaminants in the San Francisco Estuary | Oros, D. R.; David, N. | 2002 | RMP | |
| Improved forecasting for PCBs in San Francisco Bay. | Oram, J. J.; Davis, J. A. | 2007 | PPT | RMP |
| Indicators of Anthropogenic Contamination in the Estuary | Thompson, B.; Melwani, A. R.; Lowe, S.; Greenfield, B. K.; Robinson, A. | 2007 | CMR | |
| Inspection for Live Marine Invertebrates in an Oyster Shell Pile at Drakes Bay Oyster Company | Cohen, A. N.; Zabin, C. J. | 2006 | BI | |
| Interpreting Historical Maps to Reconstruct Past Landscapes in the Santa Clara Valley | Askevold, R. A. | 2005 | HEP | |
| Introduced Marine and Estuarine Invertebrates | Carlton, J. T.; Cohen, A. N.; J.T. Carlton | 2007 | HTML | BI |
| Introduced Tidal Marsh Plants in the San Francisco Estuary: Regional Distribution and Priorities for Control | Grossinger, R. M.; Alexander, J.; Cohen, A. N.; Collins, J. T. | 1998 | BI | |
| Introduction to Wetland Monitoring Protocols | San Francisco Estuary Institute | 2001 | WL | |
| Introduction, dispersal and potential impacts of the green crab Carcinus maenas in San Francisco Bay | Cohen, A. N.; Carlton, J. T.; Fountain, M. C. | 1995 | BI | |
| Intruders in the estuary | Cohen, A. N.; Carlton, J. T. | 1995 | BI | |
| Invasion by a Japanese marine microorganism in western North America | McGann, M.; Sloan, D.; Cohen, A. N. | 2000 | BI | |
| Invasion of San Francisco Bay by Smooth Cordgrass, Spartina alterniflora: A Forecast of Geomorphic Effects on the Intertidal Zone | Collins, J. N. | 2002 | BI | |
| Invasions in the sea | Cohen, A. N. | 2004 | BI | |
| Invasions status and policy on the U. S. west coast | Cohen, A. N. | 1999 | BI | |
| Invasive Species in San Francisco Bay (radio program). NPR's Science Friday (1-23-98) | Cohen, A. N. | 1998 | HTML | BI |
| Inventory of Monitoring Programs in the San Francisco Bay and Delta | Kramer, K. S. | 1989 | AHI | |
| Inventory of Priority Datasets Relating to the San Francisco Estuary | Davis, J. A. | 1988 | AHI | |
| Investigations into the Introduction of Non-indigenous Marine Organisms via the Cross-Continental Trade in Marine Baitworms | Cohen, A. N.; Weinstein, A.; Emmett, M. A.; Lau, W.; Carlton, J. | 2001 | BI | |
| Investigations of Sediment Elutriate Toxicity at Three Estuarine Stations in San Francisco Bay, California | Phillips, B. M.; Anderson, B. S.; Hunt, J. W. | 2000 | RMP | |
| Keynote Address for AHI Workshop on TIE's Status of TIE's as a Regulatory Tool in S.F. Bay Region | Aquatic Habitat Institute | 1993 | AHI | |
| Land Use Timeline for Crow Canyon and the San Lorenzo Creek Watershed | Brewster, E.; Grossinger, R. M. | 2001 | HEP WS | |
| Landscape Change in the Napa River Watershed, 1800 - 2002: Implications for the Restoration of In - Stream, Floodplain, and Valley Floor Habitat | Grossinger, R. M.; Striplen. C. J.; Brewster, E.; Collins, L. | 2003 | PPT | HEP |
| Landscape History of the Trancas: Historical Ecology Reseach Summary for the Trancas Crossing Park and Napa River Trail | Grossinger, R. M.; Beller, E. E. | 2007 | HEP | |
| Legacy Pesticides in San Francisco Bay Conceptual Model/Impairment Assessment | Connor, M.; Davis, J. A.; Leatherbarrow, J.; Werme, C. | 2004 | CMR | |
| Legacy and Emerging Contaminants in San Francisco Bay Sport Fish, 2003 | Hunt, J. A. | 2005 | HTML | RMP |
| Levels and Distribution of Polybrominated Diphenyl Ethers in Water, Surface Sediments, and Bivalves from the San Francisco Estuary | Oros, D. R.; Hoover, D.; Rodigari, F.; Crane, D.; Sericano, J. | 2005 | Link | RMP |
| Loadings of Particles and Contaminants to the Bay from the Central Valley | McKee, L. J. | 2002 | PPT | RMP |
| Major Technical Components of the Wetlands Science Program | Collins, J. N. | 2002 | WL | |
| Management Questions Guiding the RMP for Trace Substances - First Edition, 1998 | San Francisco Estuary Institute | 1998 | HTML | RMP |
| Management Questions for the Wetlands Science Program | Collins, J. N. | 2002 | WL | |
| Management Structure of the Wetlands Science Program | Collins, J. N. | 2002 | WL | |
| Managing Contaminants of Emerging Concern in California:Developing Processes for Prioritizing, Monitoring, and Determining Thresholds of Concern | California Ocean Protection Council; California Ocean Science Trust; National Water Research Institute; San Francisco Estuary Institute; Southern California Coastal Water Research Project; University of California, Irvine Urban Water Research Center | 2009 | RMP | |
| Mapping Urbanized and Rural Drainages in the Bay Area: A Tool for Improved Management of Stormwater Contaminants Derived from Small Tributaries | Wittner, E.; McKee, L. J. | 2002 | WS | |
| Measurement of sediment and contaminant loads from the Guadalupe River watershed: sampling and analysis plan | McKee, L. J. | 2002 | WS | |
| Mechanical shredding of water hyacinth (Eichhornia crassipes): Impacts to water quality in the Sacramento-San Joaquin River Delta, California | Greenfield, B. K.; Siemering, G.; Andrews, J. C.; Rajan, M.; Andrews Jr., S. P.; Spencer, D. F. | 2007 | APMP CMR | |
| Mercury Concentrations and Loads in a Large River System Tributary to San Francisco Bay, California, USA | David, N.; McKee, L .J.; Black, F. J.; Flegal, A. R; Conaway, C. H.; Schoelhamer, D. H.; Ganju, N. K. | 2009 | WS | |
| Mercury Contamination from Historic Mining in Water and Sediment, Guadalupe River and San Francisco Bay, CA | Thomas, M. A.; Conaway, C. H.; Steding, D. J.; Marvin-DiPasquale, M.; Abu-Saba, K. E.; Flegal, A. R. | 2003 | Link | RMP |
| Mercury Contamination of Sport Fish in the Delta and its Tributaries | Greenfield, B. K.; Davis, J. A.; Ichikawa, G.; Stephenson, M.; Slotton, D. G.; Ayers, S.; Jarman, W. | 2004 | RMP | |
| Mercury Effects, Sources, and Control Measures | Jones, A. B.; Slotton, D. G. | 1996 | HTML PDF | RMP |
| Mercury In Biosentinel Forage Fish In San Francisco Bay | Greenfield, B. K.; Jahn, A. | 2009 | RMP | |
| Mercury Monitoring in California Sport Fish : A Historical Review and Recommendations for the Future | Davis, J. A.; Grenier, J. L.; Melwani, A. R.; Bezalel, S.; Hunt, J. A.; Ujihara, A.; Brodberg, R. | 2006 | ||
| Mercury and methylmercury loads entering San Francisco Bay from the historic New Almaden mercury mines | McKee, L. J.; Leatherbarrow, J. | 2005 | HTML | WS |
| Mercury budget for stormwater conveyances in the San Francisco Bay Area: Towards achieving TMDL management goals for sediment and fish tissue. | McKee, L. J.; Mangarella, P. | 2006 | WS | |
| Mercury deposition in a tidal marsh downstream of the historic New Almaden mining district, CA | Conaway, C. H.; Watson, E. B.; Flanders, J. R.; Flegal, A. R. | 2003 | PPT | RMP |
| Mercury in biosentinel fish in San Francisco Bay: First-year project report | Greenfield, B. K.; Jahn, A.; Grenier, J. L.; Shonkoff, S.; Sandheinrich, M. | 2006 | RMP | |
| Mercury in sport fish from the Sacramento-San Joaquin Delta region, California | Davis, J. A.; Greenfield, B. K.; Ichikawa, G.; Stephenson, M. | 2008 | CMR | |
| Mercury transport to San Francisco Bay through the Sacramento-San Joaquin River Delta | David, N.; McKee, L. J.; Leatherbarrow, J. | 2005 | RMP | |
| Methods and Data for Analysis of Potential Distribution and Abundance of Zebra Mussels in California | Cohen, A. N.; Weinstein, A. | 1998 | BI | |
| Methods for Analysis of Spatial and Temporal Patterns | Jassby, A. D. | 1996 | HTML PDF | RMP |
| Methylmercury in San Francisco Bay Surface Sediments | Yee, D. | 2005 | HTML | RMP |
| Microbial degradation of penoxsulam in flooded rice field soils | Jabusch, T. W.; Tjeerdema, R. S. | 2006 | HTML | CMR |
| Mission Statement for the Wetlands Science Program | Collins, J. N. | 2002 | WL | |
| Modeling mercury accumulation in largemouth bass | Greenfield, B. K.; Lent, M. A.; Slotton, D. G.; Ayers, S. M. | 2008 | CMR | |
| Modeling mercury bioaccumulation in largemouth bass in the Sacramento-San Joaquin River Delta and tributaries | Greenfield, B. K.; Slotton, D. G; Ayers, S. M. | 2007 | CMR | |
| Monitoring Legacy and Emerging Pollutants at the Top of the San Francisco Bay Food Web | Davis, J. A. | 2005 | HTML | RMP |
| Monitoring Mercury in Sport Fish from Delta Watershed | Hunt, J. A.; Davis, J. A. | 2005 | ||
| Monitoring Trace Organic Contamination in Central Valley Fish: Current Data and Future Steps. | Greenfield, B. K.; Wittner, E.; David, N.; Shonkoff, S. B.; Davis, J. A. | 2004 | CMR | |
| Monitoring Water Quality in San Francisco Bay: Lessons Learned After Ten Years of Regional Monitoring | Davis, J.A.; Taberski, K. | 2003 | PPT | RMP |
| Monitoring for Non-indigenous Organisms | Cohen, A. N. | 1998 | BI | |
| Monitoring of San Francisco Bay: Is the Whole Less than the Sum of the Parts? | Schubel, J. R. | 2003 | PPT | RMP |
| Monitoring of Toxic Contaminants in the San Francisco Bay-Delta: A Critical Review, Emphasizing Spatial and Temporal Trend Monitoring | Phillips, D. J. H. | 1988 | AHI | |
| Monitoring the US West Coast: An Assessment of Californias Estuaries and the Pacific Ocean: Year 2002 Wetlands Assessment | San Francisco Estuary Institute | 2001 | WL | |
| Monitoring the US West Coast: An Assessment of Californias Estuaries and the Pacific Ocean:Spatial Hierarchy and its Rationale | Collins, J. N. | 2002 | WL | |
| Monitoring the Water Quality Impacts of Wetland Restoration | Collins, J. N. | 2007 | PPT | RMP |
| Montezuma Wetlands Monitoring Project Technical Review Team (TRT) "Kickoff" Meeting Minutes | Montezuma TRT | 2002 | WL | |
| Montezuma Wetlands Monitoring Project Technical Review Team (TRT) Charter | Lipton, D.; Bonnefil, R.; Levine, J.; Collins, J. N.; Hicks, J.; Jones, P. | 2001 | WL | |
| Montezuma Wetlands Monitoring Project Technical Review Team (TRT) First Information Package | Collins, J. N.; Grosso, C. S. | 2002 | WL | |
| Mosquito Landscapes (Abstract) | Collins, J. N. | 1998 | WL | |
| Mosquito Landscapes - Part 1 (Transcript) | Collins, J. N. | 1999 | WL | |
| Mosquito Landscapes - Part 2 (Transcript) | Collins, J. N. | 2001 | WL | |
| Napa River Sediment TMDL Baseline Study: Geomorphic Processes and Habitat form and function in Soda Creek | Pearce, S.; O'Connor, M.; Grossinger, R. M.; McKee, L. J. | 2002 | WS | |
| New Directions for the RMP: An Overview | Davis, J. A. | 2002 | PPT | RMP |
| New flame retardants detected in indoor and outdoor environments: New research suggests that a flame retardant marketed as a replacement for a banned and discontinued PBDE retardant can be found in peoples homes and the outdoor environment. | Betts, K. | 2008 | ||
| Non-Chemical Aquatic Plant Control (presented at NorCAl SETAC 2003 Conference) | David, N.; Greenfield, B. K.; Siemering, G. | 2003 | PPT | APMP |
| NorCal SEATAC 2001 - Seafood Contamination and Consumption | Davis, J.A.; Taberski, K. | 2002 | PPT | RMP |
| NorCal SEATAC 2001 - Seafood Contamination and Consumption | Davis, J. A.; Greenfield, B. K.; Roberts, C.; Fairey, R.; Ichicawa, G.; Stephenson, M.; Crane, D. | 2001 | PPT | CMR |
| Old Science, New Science: Incorporating Traditional Ecological Knowledge into Contemporary Management | Striplen, C. J.; DeWeerdt, S. | 2002 | HEP | |
| On Mitten Crabs and Lung Flukes | Cohen, A. N. | 2003 | BI | |
| Once and Future Bay: Lessons from History for Revitalizing the Bay | Grossinger, R. M.; Baye, P. | 2004 | HEP | |
| Optimizing Transplanted Bivalve Studies for the Regional Monitorig Program for Trace Substances | Hardin, D.; Salop, P.; Bemis, B.; Applied Marine Sciences | 2005 | RMP | |
| Organic Contaminant Concentrations in Bay Area Effluents | Yee, D.; Leatherbarrow, J.; Davis, J. A. | 2002 | PPT | RMP |
| Organochlorine Pesticide Fate in San Francisco Bay | Leatherbarrow, J.; David, N.; Greenfield, B. K.; Davis, J. A.; Oram, J. J. | 2006 | RMP | |
| Organophosphate Flame Retardants in San Francisco Bay Biosolids and Sediments | Klosterhaus, S.; David, E. F.; Stapleton, H. M. | 2009 | RMP | |
| Overview of 2004/05 Rapid Assessment Shore and Channel Surveys for Exotic Species in San Francisco Bay | Cohen, A. N. | 2005 | BI | |
| PCB Movement through the Food-Web of San Francisco Bay: Development of a Model (2003 RMP Annual Meeting) | Gobas, F.; Wilcockson, J. | 2003 | PPT | RMP |
| PCBs Total Maximum Daily Loads, San Francisco Bay | Hetzel, F. | 2003 | PPT | RMP |
| Pacific Estuarine Ecosystem Indicators Research Consortium (PEEIR): Generalized Conceptual Models Wetlands Regional Monitoring Program | Collins, J. N. | 2002 | WL | |
| Pacific Estuarine Ecosystem Indicators Research Consortium (PEEIR): PEEIR Project Description | Collins, J. N. | 2001 | WL | |
| Pathogen Occurrence and Analysis in Relation to Water Quality Attainment in San Francisco Bay Area Watersheds | Glasner, A.; McKee, L. J. | 2002 | WS | |
| Patterns and trends in sediment toxicity in the San Francisco Estuary | Anderson, B.; Hunt, J.; Phillips, B; Thompson, B.; Lowe, S.; Taberski, K.; Carr, R. S. | 2007 | RMP | |
| Patterns in mercury and trace organic contamination of sport fish and sediments in San Francisco Bay compared to the offshore coast | Melwani, A.; Greenfield, B; Targgart, L.; Kellogg, M. | 2009 | RMP | |
| Patterns of Water-Quality Variability in San Francisco Bay During the First Six Years of the RMP, 1993-1998 | Cloern, J. E.; Cole, B. E.; Edmunds, J. L.; Schraga, T. S.; ArnsbergScripps, A. | 2000 | HTML PDF | RMP |
| Perfluorinated Compounds in San Francisco Bay Harbor Seals | Sedlak, M.; Greig, D.; Grace, R.; Riley, P. | 2008 | RMP | |
| Perfluorinated Compounds in San Francisco Bay Harbor Seals | Sedlak, M.; Greig, D.; Grace, R.; Riley, P. | 2007 | RMP | |
| Periwinkle's progress: the Atlantic snail Littorina saxatilis (Mollusca: Gastropoda) establishes a colony on a Pacific shore | Carlton, J.; Cohen, A. N. | 1998 | BI | |
| Persistent Toxic Chemicals of Human Health Concern in Fish from San Francisco Bay and the Sacramento River, CA | Davis, J. A.; May, M. D.; Wainwright, S. E.; Fairey, R.; Roberts, C.; Ichikawa, G.; Tjeerdema, R.; Stoelting, M.; Becker, J.; Petreas, M.; Mok, M.; McKinney, M.; Taberski, K. | 2003 | HTML | RMP |
| Petition to list the seaweed Caulerpa taxifolia as a prohibited species under the Federal Noxious Weed Act | Cohen, A. N.; et al.; Bruce Babbit | 1998 | BI | |
| Pharmaceuticals and Personal Care Products in Wastewater Treatment Plant Influent and Effluent and Surface Waters of Lower South San Francisco Bay | Harrold, K. H.; Yee, D.; Sedlak, M.; Klosterhaus, S.; Davis, J. A.; Woudneh, M.; Riley, P. | 2009 | RMP | |
| Phase 2 (2003) Bioassessment of Waterbodies Treated with Aquatic Pesticides | Hayworth, J.; David, N.; Shonkoff, S. B. | 2004 | APMP | |
| Physical and Ecological Characteristics of the Historic Baylands of South San Francisco Bay (Poster for the 2003 State of the Estuary Conference) | Grossinger, R. M.; Collins, J. N.; Striplen. C. J.; Burns, T.; Brewster, E.; Richard, C.; Strode, E. | 2003 | HEP WL | |
| Phytoplankton and bacterial assemblages in ballast water of U.S. military ships as a function of port of origin, voyage time, and ocean exchange practices. | Burkholder, J. M.; Hallegraeff, G. M.; Melia, G.; Cohen, A. N.; Bowers, H. A.; Oldach, D. W.; Parrowa, M. W.; Sullivan, M. J.; Zimba, P. V.; Allen, E. H.; Mallin, M. A. | 2007 | BI | |
| Pinole Creek Sediment Source Assessment: Pavon Creeks Sub-basin | Pearce, S.; McKee, L. J.; Shonkoff, S. | 2006 | PDF PDF | WS |
| Pinole Creek Watershed Sediment Source Assessment. A technical report of the Regional Watershed Program, San Francisco Estuary Institute (SFEI), Oakland, California. (appendix only) | Pearce, S.; McKee, L. J.; Shonkoff, S. B. | 2005 | WS | |
| Pinole Creek Watershed Sediment Source Assessment. A technical report of the Regional Watershed Program, San Francisco Estuary Institute (SFEI), Oakland, California. (plotter-sized landslide map only) | Pearce, S.; McKee, L. J.; Shonkoff, S. B. | 2005 | WS | |
| Pinole Creek Watershed Sediment Source Assessment. A technical report of the Regional Watershed Program, San Francisco Estuary Institute (SFEI), Oakland, California. (report only -- no appendix) | Pearce, S.; McKee, L. J.; Shonkoff, S. B. | 2005 | WS | |
| Pinole Creek Watershed Sediment Source Assessment: A sediment budget approach highlighting watershed-scale sediment-related processes and supply to the Bay | Pearce, S.; McKee, L. J.; Arnold, C.; Hokholt, L. | 2005 | HTML | WS |
| Place Invaders | Cohen, A. N. | 1993 | BI | |
| Policy Statement on Requests for Collaborative Work - Regional Monitoring Program | San Francisco Estuary Institute | 2000 | HTML | RMP |
| Polybrominated Diphenyl Ethers in San Francisco Estuary | Sedlak, M.; Yee, D.; Davis, J. A.; Oros, D.; Rodigari, F.; van Bergen, S.; Crane, D.; Hoover, D. | 2006 | RMP | |
| Polychlorinated biphenyls (PCBs) in San Francisco Bay | Davis, J. A.; Hetzel, F.; Oram, J. J.; McKee, L. J. | 2007 | RMP | |
| Polycyclic aromatic hydrocarbon (PAH) contamination in San Francisco Bay: A 10-year retrospective of monitoring in an urbanized estuary | Oros, D. R.; Ross, J. R. M.; Spies, R. M.; Mumley, T. | 2006 | RMP | |
| Polycyclic aromatic hydrocarbons in San Francisco Estuary sediments | Oros, D. R.; Ross, J. R. M. | 2004 | RMP | |
| Polycyclic aromatic hydrocarbons in the San Francisco Estuary water column: Sources, spatial distributions, and temporal trends (1993-2001) | Ross, J. R. M.; Oros, D. | 2004 | Link | RMP |
| Possible Geomorphic Effects of Invasive Spartina alterniflora in the San Francisco Estuary | Collins, J. N. | 2001 | PPT | WL |
| Potential Distribution of Zebra Mussels (Dreissena polymorpha) and Quagga Mussels (Dreissena bugensis) in California Phase 1 Report. A Report for the California Department of Fish and Game | Cohen, A. N. | 2007 | BI | |
| Potential for increased mercury accumulation in the Estuary food web: Issues in San Francisco Estuary Tidal Wetlands Restoration | Davis, J. A.; Yee, D.; Collins, J. N.; Schwarzbach, S. E.; Luoma, S. N. | 2003 | Link | RMP |
| Power Analysis and Optimization of the RMP Status and Trends Program | Melwani, A. R.; Greenfield, B. K.; Jahn, A.; Oram, J. J.; Sedlak, M.; Davis, J. A. | 2008 | RMP | |
| Practical Guidebook to the Control of Invasive Aquatic and Wetland Plants of the San Francisco Bay - Delta Region | May, M.; Grosso, C. S.; Collins, J. N. | 2003 | HTML | BI |
| Predicting mercury levels in fish: use of water chemistry, trophic ecology, and spatial traits | Greenfield, B. K.; Hrabik, T. R.; Harvey, C. J.; Carpenter, S. R. | 2000 | RMP | |
| Preventing the introduction of non-native species with imported oyster shell used for cultch in restoration projects: an inspection, and consideration of future protocols | Cohen, A. N.; Zabin, C. J. | 2007 | BI | |
| Proceedings of a Workshop on Chronic Toxicity Identification Evaluations in the San Francisco Bay Region | Aquatic Habitat Institute | 1992 | AHI | |
| Process and Products for RMP Redesign Implementation by January 2002 | San Francisco Estuary Institute | 2002 | HTML | RMP |
| Program Development for the Wetlands Science Program | Collins, J. N. | 2002 | WL | |
| Program Strategy for the Wetlands Science Program | Collins, J. N. | 2001 | WL | |
| Project Report for the Southern California Exotics Expedition 2000 A Rapid Assessment Survey of Exotic Species in Sheltered Coastal Waters | Cohen, A. N.; Harris, L. H.; Bingham, B. L.; Carlton, J. T.; Chapman, J. W.; Lambert, C. C.; Lambert, G.; Ljubenkov, J. C.; Murray, S. N.; Rao, L. C.; Reardon, K.; Schwindt, E. | 2002 | BI | |
| Protocol for Accessing and Sampling Archived Sediments from the San Francisco Estuary RMP for Trace Substances | San Francisco Estuary Institute | 2000 | HTML | RMP |
| Pulse of the Estuary 2005: Monitoring and Managing Water Quality in the San Francisco Estuary | San Francisco Estuary Institute | 2005 | RMP | |
| Pulse of the Estuary 2005: Monitoring and Managing Water Quality in the San Francisco Estuary | Davis, J. A.; Grenier, J. L.; Grossinger, R. | 2005 | RMP | |
| Pulse of the Estuary: Monitoring and Managing Water Quality in the San Francisco Estuary | San Francisco Estuary Institute | 2008 | HTML PDF | RMP |
| Pulse of the Estuary: Monitoring and Managing Water Quality in the San Francisco Estuary | Davis, J. A.; et.al.; Jay Davis | 2006 | RMP | |
| Pyrethroid Insecticides: An Analysis of Use Patterns, Distributions, Potential Toxicity and Fate in the Sacramento-San Joaquin Delta and Central Valley | Oros, D.; Werner, I. | 2005 | CMR | |
| Pyrethroids Workshop: Facing Up to the Challenges in Pyrethroids Methods Development and Field Monitoring | PRISM -Sediment Contamination & Toxicity Study, the PRISM-Methods Development Study, the RMP - Episodic Toxicity program, and SFEI in general. | 2006 | HTML | RMP |
| Pyrethroids, Pyrethrins, and Piperonyl Butoxide in Sediments by High Resolution Gas Chromatography/High Resolution Mass Spectrometry | Woudneh, M.; Oros, D. R. | 2006 | CMR | |
| QAPP for environmental monitoring and assessment program West Coast Pilot 2002 Intertidal Assessment: California Intensification | Sutula, M.; Collins, J. N.; Callaway, J.; Parker, T.; Vasey, M.; Wittner, E. | 2001 | WL | |
| Quality Assurance Project Plan: Investigations of Sources and Effects of Pyrethroid Pesticides in Watersheds of the San Francisco Bay Estuary | Lowe, S.; Anderson, B. | 2007 | CMR | |
| Quantitative Determination of Pyrethroids, Pyrethrins, and Piperonyl Butoxide in Surface Water by High Resolution Gas Chromatography/High Resolution Mass Spectrometry | Woudneh, M.; Oros, D. R. | 2006 | CMR | |
| RMP 2007 Annual Monitoring Results | San Francisco Estuary Institute | 2009 | RMP | |
| RMP Annual Meeting 1998 (Transcript) | Collins, J. N. | 1998 | RMP | |
| RMP Benthic Assessment Workshop | SFEI and the RMP | 2006 | HTML | RMP |
| RMP Food Web Analysis; Data Report on Gut Contents of Four Fish Species | Jahn, A. | 2008 | RMP | |
| RMP News - Newsletter of the Regional Monitoring Program | San Francisco Estuary Institute | 2004 | HTML | RMP |
| RMP Objectives-Revised April 15, 1998 | San Francisco Estuary Institute | 1998 | HTML | RMP |
| RMP Re-design Extended Schedule | San Francisco Estuary Institute | 2001 | HTML | RMP |
| RMP Re-design Schedule | San Francisco Estuary Institute | 1999 | HTML | RMP |
| RMP Sediment TIE Study 2007-2008: Using Toxicity Identification Evaluation (TIE) Methods to Investigate Causes of Sediment Toxicity to Amphipods | Lowe, S. | 2008 | RMP | |
| RMP Watershed Pilot Study: An Information Review with Emphasis on Contaminant Loading, Sources, and Effects | Daum,T.; Hoenicke, R. | 1998 | HTML PDF | RMP |
| Rapid Assessment Channel Survey for Exotic Species in San Francisco Bay - November 2005 | Cohen, A. N.; Chapman, J. W. | 2005 | BI | |
| Rapid Assessment Shore Survey for Exotic Species in San Francisco Bay - May 2004 | Cohen, A. N.; Calder, D. R.; Carlton, J. T.; Chapman, J. W.; Harris, L. H.; Kitayama, T.; Lambert, C.C.; Lambert, G.; Piotrowski, C.; Shouse, M.; Solórzano, L. A. | 2005 | BI | |
| Rapid Assessment Survey for Exotic Organisms in Southern California Bays and Harbors, and Abundance in Port and Non-port Areas | Cohen, A. N.; Harris, L.; Bingham, B.; Carlton, J.; Chapman, J.; Lambert, C.; Lambert, G.; Ljubenkov, J. C.; Murray, S. N.; Rao, L. C.; Reardon, K.; Schwindt, E. | 2005 | BI | |
| Re-Oaking the Valleys: Bringing Native Trees Back into Californias Suburban Landscapes | Grossinger, R. M.; Whipple, A. | 2009 | HEP | |
| Re-design Process of the San Francisco Estuary Regional Monitoring Program for Trace Substances (RMP) | Lowe, S.; Thompson, B; Hoenicke, R.; Leatherbarrow, J.; Taberski, K.; Smith, R.; Stevens, D. | 2004 | RMP | |
| Recommendations for Improvement of RMP Sediment Monitoring | Abu-Saba, K.; Amdur, J.; Anderson, B.; Brown, C.; Daum, T.; Davis, J. A.; Delorey, J.; Flegal, R.; Gregg, J.; Hornberger, M.; Lee III, H.; Lowe, S.; Luoma, S. N.; Scholelhamer, D.; Taberski, K.; Thompson, B.; Young, D. | 1999 | HTML PDF | RMP |
| Recommendations for a Bioaccumulation Monitoring and Human Health Risk Reduction Program for California | Davis, J. A. | 2008 | CMR | |
| Red tide in Berkeley Marina raises concern for toxic blooms in Central Bay | Cole, B.; Cohen, A. N. | 1997 | WL | |
| Red-Legged Frog Protocol | Padgett-Flohr, G. E.; Jennings, M. R. | 2002 | WL | |
| Regional Monitoring Program for Trace Substances in the San Francisco Estuary 2005 Program Plan | Davis, J. A. | 2005 | RMP | |
| Regional Monitoring of Water Quality in San Francisco Bay: Lessons Learned After Ten Years | San Francisco Estuary Institute | 2002 | PPT | RMP |
| Regional Watershed Program (PowerPoint presentation presented to the SFEI Board of Directors on 3/28/03) | McKee, L. J. | 2003 | WS | |
| Regional Wetlands Monitoring in San Francisco Bay (Abstract) | Collins, J. N. | WL | ||
| Regional Wetlands Monitoring in San Francisco Bay (Transcript) | Collins, J. N. | WL | ||
| Regulating Emerging Technologies in Silicon Valley and Beyond : Lessons Learned from 1981 Chemical Spills in the Electronics Industry and Implications for Regulating Nanotechnology | Bolam, V.; Davis, S.; Davison, A.; Ornelas, L.; Sanz, E.; Starkey, M.; Williams, M. | 2008 | Link | |
| Relationship Between Sediment Contamination and Toxicity in San Francisco Bay | Thompson, B.; Anderson, B.; Hunt, J.; Taberski, K.; Phillips, A. | 1998 | HTML | RMP |
| Relationship Between Sediment Toxicity and Contamination in San Francisco Bay | Thompson, B.; Anderson, B.; Hunt, J.; Taberski, K.; Phillips, B. | 1997 | HTML | CMR |
| Relationship Between Sediment Toxicity and Contamination in San Francisco Bay (Abstract) | Thompson, B.; Anderson, B.; Hunt, J.; Taberski, K.; Phillips, B. | 1999 | HTML | CMR |
| Relative effects of fluvial processes and historical land use on channel morphology in three sub-basins, Napa River basin, California, USA | Pearce, S.; Grossinger, R. M. | 2004 | WS HEP | |
| Report of Science Advisors: Solano County Natural Community Conservation Plan Habitat Conservation Plan | Noss, R.; Amundson, R.; Arnold, D.; Bradbury, M.; Collinge, S.; Grewell, B.; Grosberg, R.; McKee, L. J.; Northern, P.; Swanson, C.; Yoshiyama, R.; DiGennaro, B.; Russell, V. | 2002 | WS | |
| Report of the 2003 Program Review | Berger, R.; Conomos, J.; Herrgesell, P.; Mearns, A.; Schubel, J. R.; Weisberg, S. | 2004 | RMP | |
| Report of the Bioaccumulation Workshop | San Francisco Estuary Institute | 1999 | HTML PDF | RMP |
| Report of the Pesticide Workgroup | San Francisco Estuary Institute | 1999 | HTML PDF | RMP |
| Report of the Washington State Exotics Expedition 2000 | Cohen, A. N.; Berry, H.; Mills, C.; Milne, D.; Britton-Simmons, K.; Wonham, M.; Secord, D.; Barkas, J. A.; Bingham, B.; Bookheim, B.; Byers, J.; Chapman, J. W.; Cordell, J.; Dumbauld, B.; Fukuyama, A.; Harris, L. H.; Kohn, A.; Li, K.; Mumford, T.; Radashevsky, V.; Sewell, A.; Welch, K. | 2001 | BI | |
| Restoration of the San Francisco Region: the Role of NGOs (Abstract) | Collins, J. N. | 2001 | WL | |
| Results of the Benthic Pilot Study 1994 - 1997, Part 1 | Thompson, B.; Lowe, S.; Kellogg, M. | 2000 | RMP | |
| Results of the Estuary Interface Pilot Study, 1996-1999, Final Report. (Technical Report of the Sources Pathways and Loading Work Group (SPLWG) of the San Francisco Estuary Regional Monitoring Program for Trace Substances (RMP)) | Leatherbarrow, J. E.; Hoenicke, R.; McKee, L. J. | 2002 | WS | |
| Resurrection (Article in New Scientist) | DeWeerdt, S. | 2001 | HEP | |
| Review of Alternative Aquatic Pest Control For California Waters | Greenfield, B. K.; David, N.; Hunt, J.; Wittmann, M.; Siemering, G. | 2004 | APMP | |
| Review of Alternative Aquatic Pest Control Methods For California Waters | Greenfield, B. K.; David, N.; Hunt, J.; Wittmann, M.; Siemering, G. | 2004 | APMP CMR | |
| Review of Alternative Aquatic Pest Control Methods For California Waters | Greenfield, B. K.; David, N.; Hunt, J.; Wittmann, M.; Siemering, G. | 2004 | APMP | |
| Review of methods to reduce urban stormwater loads | San Francisco Estuary Institute; GeoSyntec | 2006 | HTML | WS |
| River Otter Protocol | Breaux, A.; Zielinski, W.; Kucera, T. | 2002 | WL | |
| Riverine Transport of Sediment and Mercury to North San Francisco Bay | David, N.; McKee, L. J.; Leatherbarrow, J. | 2006 | RMP | |
| Robert A. Leidy Fish Survey 1992-1998 Bay Area Stream Fishes | Leidy, R. A. | 1999 | HEP WS | |
| SFEI Policy: Release of Preliminary Data from the RMP (Revised May 10, 1999) | San Francisco Estuary Institute | 1999 | HTML | RMP |
| SFEI: More Than Just RMP (2002 RMP Annual Meeting) | Thompson, B. | 2002 | PPT | RMP |
| SWAMP Fact Sheet: Long-Term Monitoring of Pollutants in Fish and Mussels Documents Major Improvements and Persistent Problems | Davis, J. A. | 2008 | CMR | |
| Sampling in the Freshwater Reaches of the Lower Delta for Sediment Quality Objectives Measures | Lowe, S.; Salop, P.; Gehrts, K.; Andreson, B. S.; Philips, B. M.; Bay, S. | 2008 | ||
| Sampling in the Freshwater Reaches of the Lower Delta for the Sediment Quality Objectives Measures | Lowe, S.; Salop, P.; Gehrts, K.; Anderson, B.; Phillips, B. M.; Bay, S. | 2008 | CMR | |
| Sampling in the Freshwater Reaches of the Lower Delta for the Sediment Quality Objectives Measures. UPDATED for CALFED meeting Oct 2008 | Lowe, S.; Salop, P.; Gehrts, K.; Anderson, B.; Phillips, B. M.; Bay, S. | 2008 | CMR | |
| San Francisco Bay Atmospheric Deposition Pilot Study Part 3: Dry Deposition of PAHs and PCBs | Tsai, P.; Hoenicke, R.; Yee, D.; Baker, J. E.; Bamford, H. A. | 2005 | RMP | |
| San Francisco Bay Atmospheric Deposition Pilot Study (Trace Metals): Presentation at 2001 WEFTEC | Tsai, P.; Hoenicke, R.; Hansen, E.; Lee, K.; Tucker, D. | 2001 | RMP | |
| San Francisco Bay Atmospheric Deposition Pilot Study Part 1: Mercury | Tsai, P.; Hoenicke, R. | 2001 | HTML PDF | RMP |
| San Francisco Bay Atmospheric Deposition Pilot Study Part 2: Trace Metals | Tsai, P.; Hoenicke, R.; Hansen, E.; Lee, K. | 2001 | RMP | |
| San Francisco Bay Episodic Toxicity Report - 2000 | Ogle, S. R.; Gunther, A. J.; Salop, P.; Bell, D.; Cotsifas, J.; Gold, J. | 2001 | RMP | |
| San Francisco Bay Episodic Toxicity Report: 1999 Progress Report | Ogle, S. R.; Gunther, A. J. | 2000 | HTML PDF | RMP |
| San Francisco Bay Mercury Loads: Scientific information development and management response. Harmonizing River Catchment and Estuary | McKee, L. J.; Yee, D.; Leatherbarrow, J. E.; David, N.; Gilbreath, A. N.; Mangarella, P.; Looker, R. | 2008 | Link | RMP |
| San Francisco Bay Mercury News - an electronic newsletter of mercury research in the Bay Area | San Francisco Estuary Institute | 2005 | HTML | RMP |
| San Francisco Bay Mercury Research Coordination Meeting February 23, 2005 Presentation- A Pilot Program for Monitoring, Stakeholder Involvement, and Risk Communication in the Bay-Delta Watershed (aka Fish Mercury Project ) | San Francisco Estuary Institute; Moss Landing Marine Lab; UC Davis; DHS/EHIB; OEHHA | 2005 | ||
| San Francisco Bay Mercury Research Coordination Meeting February 23, 2005 Presentation- Cross-scale Exploration of Stressor-State Correlations EMAP Estuaries SF Bay Intensification Project | Collins, J. N.; Grosso, C. S.; Wittner, E. | 2005 | ||
| San Francisco Bay Mercury Research Coordination Meeting February 23, 2005 Presentation- Hg Fate and Transport Within the San Jose/Santa Clara WPCP: Study Design and Preliminary Results presented by James Downing | Downing, J. | 2005 | ||
| San Francisco Bay Mercury Research Coordination Meeting February 23, 2005 Presentation- Introduction to the QA Program for Mercury Studies | van Buuren, B. | 2005 | ||
| San Francisco Bay Mercury Research Coordination Meeting February 23, 2005 Presentation- Meeting Agenda | to come | 2005 | ||
| San Francisco Bay Mercury Research Coordination Meeting February 23, 2005 Presentation- Mercury Concentrations in Fishfrom the San Francisco Bay Area | Taberski, K. | 2005 | ||
| San Francisco Bay Mercury Research Coordination Meeting February 23, 2005 Presentation- Mercury TMDL in the Guadalupe River Watershed | Grieb, T. | 2005 | ||
| San Francisco Bay Mercury Research Coordination Meeting February 23, 2005 Presentation- San Francisco Bay Mercury TMDL Regulatory Update | Looker, R. | 2005 | ||
| San Francisco Bay Mercury Research Coordination Meeting February 23, 2005 Presentation- Survey of UCSC Mercury Work in and around San Francisco Bay. Hg complexation, salmonid uptake, algalblooms, fuel emissions... a whirlwind tour presented by Frank Black | Black, F.; Flegal, A. R; Conaway, C.; Leungen, A.; Langster, M. | 2005 | ||
| San Francisco Bay PCB Food - Web Model | Gobas, F.; Wilcockson, F. | 2003 | RMP | |
| San Francisco Bay Seafood Consumption Report | California Department of Health Services Environmental Health Investigations Branch; San Francisco Estuary Institute | 2001 | HTML PDF | RMP |
| San Francisco Bay, CA: Comprehensive ecosystem evaluation needed to discern causes of chlorophyll a increases | NOAA | 2007 | RMP | |
| San Francisco Environmental Indicators Workshop (January 26, 2005): Summary Report | San Francisco Estuary Institute | 2005 | CMR | |
| San Francisco Estuary National Water Quality Monitoring Network Pilot Study Report | Harrold, K. H.; Lowe, S.; Connor, M.; Williams, M.; Kerkering, H.; Farrarr, C.; Eagles-Smith, C | 2008 | RMP | |
| San Francisco Estuary Project Status and Trends Report on Pollutants in the San Francisco Estuary, Final Draft | Davis, J. A.; Gunther, A.; Richardson, B. J.; O'Connor, J.; Spies, R. B.; Wyatt, E.; Larson, E.; Meiorin, E. C. | 1991 | AHI | |
| San Francisco Estuary Wetalnds Regional Monitoring Program Plan: Version 1, Framework and Protocols | Collins, J. N. | 2002 | WL | |
| San Pedro Creek Watershed Sediment Source Analysis, Volume III: Tributary sediment source assessment | Pearce, S.; McKee, L. J.; Shonkoff, S. B. | 2004 | WS | |
| Science Support for the Surface Water Ambient Monitoring Program, SWRCB Agreement No. 03-200-250-0 | Hoenicke, R.; Lowe, S.; Davis, J. A. | 2008 | CMR | |
| Seasonal, Interannual, and Long-term Variation in sport fish contamination, San Francisco Bay | Greenfield, B. K.; Davis, J. A.; Fairey, R.; Roberts, C.; Crane, D.; Ichikawa, G. | 2004 | Link PDF | RMP |
| Second Annual Report Montezuma Wetlands Restoration Project Technical Review Team | Collins, J.; Grosso, C. S. | 2006 | WL | |
| Sediment Contaminants | Collins, J. N.; May, M.; Davis, J. A. | 2002 | WL | |
| Sediment Contamination in San Leandro Bay, CA | Daum, T.; Toia, R.; Fairey, R.; Anderson, J.; Jones, J. | 2000 | RMP | |
| Sediment Dynamics Drive Contaminant Dynamics | Schoellhamer, D.; Shellenbarger, G.; Ganju, N.; Davis, J. A.; McKee, L. J. | 2003 | PPT | RMP |
| Sediment Protocols | Callaway, J.; Stuart, S. | 2002 | WL | |
| Sediment Quality Assessments in the San Francisco Estuary | Lowe, S.; Thompson, B. | 2008 | RMP | |
| Sediment Toxicity Identification Evaluations San Francisco Bay RMP for Trace Substances - Progress Report | Anderson, B. S.; Phillips, B. M.; Hunt, J. W. | 2001 | RMP | |
| Sediment and Contaminant Loading from the Guadalupe River: Implications for TMDLs and Mass Budget Models (presented at NorCal SETAC 2003 Conference) | Leatherbarrow, J.; McKee, L. J. | 2003 | WS | |
| Sediment loads transported from the Delta: Implications for management of pollutants of concern | McKee, L. J. | 2001 | WS | |
| Selenium Concentrations in Surf Scooter and Greater Scaup from the San Francisco Estuary | Hunt, J. A.; Ross, J. R. M.; Davis, J. A.; Lowe, S.; Lovvom, J.; Crane, D.; Burkholder, B. | 2003 | RMP | |
| Selenium Concentrations in Surt Scoter | Hunt, J. A.; Ross, J. R. M.; Davis, J. A.; Lowe, S.; Lovvom, J.; Crane, D.; Burkholder, B. | 2006 | ||
| Setting Goals and Defining Watershed and Stream "Health" to Better Integrate Policies, Programs, and Projects | Hoenicke, R.; Collins, J. N. | 2008 | WS | |
| Shell damage and salt marsh periwinkles (Littoraria irrorata Say) and resistance to future attacks by blue crabs (Callinectes sapidus Rathbun) | Greenfield, B. K.; Lewis, D. B.; Hinke, J. T. | 2002 | PDF PDF | WL |
| Shellfish Beds in Report on the Subtidal Habitats and Associated Biological Taxa in San Francisco Bay | Cohen, A. N.; Cosentino-Manning, N.; Schaeffer, K. | 2007 | Link | BI |
| Shifting Baselines in a California Oak Savanna: Nineteenth Century Data to Inform Restoration Scenarios. | Whipple, A. A.; Grossinger, R. M.; Davis, F. W. | In Press | HEP | |
| Ships' Ballast Water and the Introduction of Exotic Organisms into the San Francisco Estuary: Current Status of the Problem and Options for Management | Cohen, A. N. | 1998 | BI | |
| Sonoma Valley Historical Ecology Project, Phase 1 Final Report | Grossinger, R. M.; Dawson, A. | 2002 | HEP | |
| Sources, Pathways and Loadings Documents | San Francisco Estuary Institute | 2002 | HTML | WS |
| Sources, Pathways, and Loadings: 5-Year Work Plan (2005-2009) | McKee, L. J. | 2005 | RMP | |
| Sources, transport, fate and toxicity of pollutants in the San Francisco Bay estuary | Flegal, A. R.; Davis, J. A.; Connor, M. S.; Conaway, C. H. | 2007 | RMP | |
| South Bay Salt Pond Restoration Project Interactive Map | Larned, K. | 2005 | HTML | WL |
| South Bay Trace Organic in Effluent Study Report | San Francisco Estuary Institute | 2001 | CMR | |
| South Bay/Fairfield-Suisun Trace Organic Contaminants in Effluent Study | Yee, D.; Leatherbarrow, J.; Davis, J. A.; Prepared for the San Jose/Santa Clara Water Pollution Control Plant, Sunnyvale Water Pollution Control Plant, Palo Alto Water Quality Control Plant, and Fairfield-Suisun Sewer District | 2001 | CMR | |
| South Baylands Mercury Project: Developing biosentinel species to monitor changes in food-web mercury for the South Bay Salt Pond Restoration Project | Hunt, J. A.; Grenier, J. L.; Robinson, A.; Bezalel, S.; Norman, C.; Collins, J. | 2007 | WL | |
| South Baylands Mercury Project: Assessing Differences in Food-web Mercury Associated with Restoring Salt Ponds to Tidal Marsh in South San Francisco Bay | Robinson, A.; Grenier, J .L.; DiPasquale, M.M.; Drury, D.; Melwani, A.; Bezalel, S.; Hunt, J.; Collins, J. N | 2009 | WL | |
| South Santa Clara Valley Historical Ecology Study, including Soap Lake, the Upper Pajaro River, and Llagas, Uvas-Carnadero, and Pacheco Creeks | Grossinger, R. M.; Beller, E. E.; Salomon, M.; Whipple, A.; Askevold, R. A.; Striplen. C. J.; Brewster, E.; Leidy, R. A. | 2008 | HTML HTML | HEP |
| South and Central Bay Wetlands Projects | Collins, J. N. | 2003 | WL | |
| Spatial and Temporal Variability in the Aquatic Cycling of Chromium | Abu-Saba, K. | 1998 | HTML | RMP |
| Spatial and temporal variations in silver contamination and toxicity in San Francisco Bay | Flegal, A. R.; Brown, C. L.; Squire, S.; Ross, J. R. M.; Scelfo, G. M.; Hibdon, S. | 2007 | RMP | |
| Spatial trends and impairment assessment of mercury in sport fish in the Sacramento-San Joaquin Delta Watershed | Melwani, A. R.; Bezalel, S. N.; Hunt, J. A.; Grenier, J. L.; Ichikawa, G.; Heim, W.; Bonnema, A.; Foe, C.; Slotton, D. G.; Davis, J. A. | 2009 | CMR | |
| Sport fish contamination in the Bay-Delta watershed | Davis, J. A.; Greenfield, B. K. | 2004 | CMR | |
| Stable isotopes may help explain fish contamination patterns in the Estuary | Greenfield, B. K. | 2002 | RMP | |
| State of the Estuary 2005 Conference Abstract | Grossinger, R. M.; Askevold, R. A.; Richard, C. | 2005 | HEP | |
| Status And Trends Report On Pollutants In The San Francisco Estuary | San Francisco Bay-Delta Aquatic Habitat Institute | 1991 | AHI | |
| Stream Inventory Report for La Honda Creek: Prepared for the Midpeninsula Regional Open Space District | Pearce, S.; Gilbreath, A. N.; McKee, L. J. | 2007 | WS | |
| Streams, Wetlands, and Woodlands in the Napa Valley: New Perspectives from Old Maps | Beller, E. E.; Grossinger, R. M.; Askevold, R. A.; Pearce, S.; Collins, J. N.; McKee, L. J.; Hoenicke, R.; Gardner, S. | 2007 | HEP | |
| Success factors in the establishment of human-dispersed organisms | Cohen, A. N.; J M Bullock; R E Kenward; R S Hails | 2002 | BI | |
| Summary of 10 years of sediment toxicity monitoring for the San Francisco Estuary RMP | Anderson, B.; Phillips, B. M.; Hunt, J. A.; Nicely, P.; Tjeerdema, R.; Thompson, B.; Lowe, S.; Davis, J. A.; Taberski, K. | 2003 | PPT | RMP |
| Summary of Crissy Field Monitoring Elements | Collins, J. N. | 2002 | WL | |
| Summary of Suspended-Sediment Concentration Data, San Francisco Bay, California, Water Year 2000 | Buchanan, P. A.; Ganju, N. K. | 2002 | Link | RMP |
| Summary of data and analyses indicating that exotic species have impaired the beneficial uses of certain California waters | Cohen, A. N.; Moyle, P. B. | 2004 | BI | |
| Surveillance Monitoring in the RMP | David, N.; Oros, D.; Risebrough, R. | 2002 | PPT | RMP |
| Surveillance for Previously Unmonitored Organic Contaminants in the San Francisco Estuary (Poster) | Oros, D. R. | 2003 | CMR | |
| Surveillance for previously unmonitored organic contaminants in the San Francisco Estuary | Oros, D. R.; Jarman, W. M.; Lowe, T.; David, N.; Lowe, S.; Davis, J. A. | 2003 | Link | RMP |
| Suspended sediment and sediment-associated contaminants in San Francisco Bay | Schoelhammer, D. H.; Mumley, T. E.; leatherbarrow, J. E. | 2007 | RMP | |
| Sustainable Cotton Project | David, N. | 2009 | WS | |
| Sustaining Regional Partnerships for Conservation: Sharing the Future | Collins, J. N. | PPT | WL | |
| Synthesis of Scientific Knowledge: for maintaining and improving functioning of the South Bay Ecosystem and Restoring Tidal Salt Marsh and Associated Habitats over the next 50 years at Pond and Pond-Complex Scales | Collins, J. N.; Grossinger, R. M. | 2004 | WL HEP | |
| Synthesis of long-term nickel monitoring in San Francisco Bay | Yee, D.; Grieb, T.; Mills, W.; Sedlak, M. | 2007 | RMP | |
| T-Sheet User Guide: Application of the Historical U.S. Coast Survey Maps to Environmental Management in the San Francisco Bay Area | Grossinger, R. M.; Askevold, R. A.; Collins, J. N. | 2005 | HEP | |
| Tanaidacea in The Light & Smith Manual: Intertidal Invertebrates of the California and Oregon Coast. | Cohen, A. N.; J.T. Carlton | 2007 | HTML | BI |
| Technical Report for the Interagency Ecological Program (IEP) Pelagic Organism Decline (POD) Workgroup: Tier 1 Risk Assessment of California Department of Boating and Waterways Aquatic Herbicide Use in the Sacramento-San Joaquin River Delta. | Siemering, G. | 2006 | CMR | |
| Technical Report of the Chlorinated Hydrocarbon Workgroup | Davis, J. A.; Yoon, J. | 1999 | HTML PDF | RMP |
| Technical Report of the Sources, Pathways, and Loadings Workgroup | Davis, J. A.; Abu-Saba, K.; Gunther, A. J. | 2001 | PDF PDF | RMP |
| The 1998 Puget Sound Expedition: a rapid assessment survey for nonindigenous species in the shallow waters of Puget Sound | Mills, C. E.; Cohen, A. N.; Berry, H.; Wonham, M.; Bingham, B.; Bookheim, B.; Carlton, J. T.; Chapman, J. W.; Cordell, J. R.; Harris, L. H.; Klinger, T.; Kohn, A.; Lambert, C. C.; Lambert, G.; Li, K.; Secord, D.; Toft, J. | 1999 | BI | |
| The 2004 to 2005 RMP Annual Monitoring Results | San Francisco Estuary Institute | 2006 | RMP | |
| The Baylands: Past, Present, and Change (Abstract) | Collins, J. N. | 1998 | WL | |
| The Bioavailability of Toxic Contaminants in the San Francisco Bay-Delta - Proceedings of a Two Day Seminar Series | Gunther, A. J.; San Francisco Estuary Institute; AHI | 1989 | CMR | |
| The Challenges in Designing an Effective Regional Watershed Sampling Program | McKee, L. J. | 2001 | WS | |
| The Clean Estuary Partnership and the RMP: Comparing two stakeholder programs producing science in support of policy (2003 RMP Annual Meeting) | Kelly, J. M. | 2003 | PPT | RMP |
| The Design Process for the Status and Trends Component | Lowe, S.; Thompson, B.; Hoenicke, R.; Leatherbarrow, J.; Smith, R. T.; Stevens, D.; Grosso, C. S.; DIWG | 2002 | PPT | RMP |
| The Environment of the East Bay Shoreline When Europeans First Arrived (Transcript) | Collins, J. N. | 1999 | HEP WL | |
| The Historical Ecology of Contra Costa County: An Illustrated Preview and Guide | Beller, E. E.; Whipple, A.; Askevold, R. A.; Grossinger, R. M. | 2007 | HEP | |
| The Historical Ecology of Miller Creek | Salomon, M.; Collins, J. N.; Grossinger, R. M.; Striplen. C. J.; Brewster, E. | 2008 | Link | |
| The Historical Ecology of Napa Valley: An Introduction | Grossinger, R. M.; Beller, E. E.; Collins, J. N.; Gardner, S. | 2008 | HEP | |
| The Historical Geography and Biogeography of Tidal Salt Marshes (Abstract) | Malamud-Roam, K.; Malamud-Roam, F.; Collins, J. N.; Ingram, B. L.; Watson, E. | 2002 | WL | |
| The Influence of Chemical and Physical Factors on Macrobenthos in the San Francisco Estuary | Melwani, A. R.; Thompson, B. | 2008 | RMP | |
| The Long-Term Fate of PCBs in San Francisco Bay | Davis, J. A. | 2004 | Link | RMP |
| The Long-Term Fate of PCBs in San Francisco Bay | Davis, J. A. | 2003 | PDF PPT | RMP |
| The National Hydrography Data Set: San Francisco Bay Area | Wittner, E.; McKee, L. J. | 2002 | WS | |
| The Panama Canal: Cutting a canal through Central America | Cohen, A. N.; S. Gollasch; B.S. Galil; A.N. Cohen | 2006 | Link | BI |
| The Panama Canal: Species Introductions and the Panama Canal | Cohen, A. N.; Gollasch, S.; Galil, B.S.; Cohen, A.N. | 2006 | Link | BI |
| The Potential Distribution and Abundance of Zebra Mussels in California | Cohen, A. N.; Weinstein, A. | 1998 | BI | |
| The Potential Distribution of Chinese Mitten Crabs (Eriocheir sinensis) in selected waters of the Western United States with U.S. Bureau of Reclamation Facilities | Cohen, A.N.; Weinstein, A. | 2001 | BI | |
| The Pulse of the Estuary: 2000 Update | May, M. | 2002 | PPT | RMP |
| The Pulse of the Estuary: Monitoring and Managing Contamination in the San Francisco Estuary 1993-1999 | San Francisco Estuary Institute | 2001 | RMP | |
| The Pulse of the Estuary: Monitoring and Managing Contamination in the San Francisco Estuary 1993-2001 | San Francisco Estuary Institute | 2003 | RMP | |
| The Pulse of the Estuary: Monitoring and Managing Contamination in the San Francisco Estuary, 2000 Update | May, M. | 2002 | RMP | |
| The Pulse of the Estuary: Monitoring and Managing Water Quality in the San Francisco Bay | San Francisco Estuary Institute (SFEI) | 2009 | RMP | |
| The Pulse of the Estuary: Tracking Contamination with the Regional Monitoring Program 1993-1998 | May, M. | 2000 | RMP | |
| The RMP Mercury Strategy: Studies Underway | Greenfield, B. K. | 2008 | PPT | RMP |
| The Regional Monitoring Program: Science in Support of Managing Water Quality in San Francisco Bay | Davis, J. A.; Taberski, K.; Buchan, K.; Tucker, D.; Flegal, A. R.; Gunther, A. J. | 2006 | RMP | |
| The Relationship between Landscape Features and Sport Fish Mercury in the Sacramento-San Joaquin Delta Watershed | Melwani, A. R.; Bezalel, S. N.; Grenier, L. G.; Hunt, J. A.; Robinson, A. H.; Davis, J. A. | 2007 | CMR | |
| The Role of Sedimentation in Estuarine Marsh Development within the San Francisco Estuary, California, USA | Culberson, S. D.; Foin, T. C.; Collins, J. | 2004 | Link | |
| The San Francisco Bay Seafood Consumption Study Report | Davis, J. A. | 2001 | HTML | RMP |
| The San Francisco Bay Water Board's Regulatory Approach and Information Needs | Looker, R. | 2008 | PPT | RMP |
| The State of San Francisco Bay: Water Quality | Davis, J. A.; Connor, M. S.; Flegal, A. R. | 2007 | PPT | RMP |
| The UC Davis Biosentinel Mercury Program: Using Small Fish to Monitor Fine-scale Patterns of Methylmercury Contamination in the Watershed | Slotten, D.; Davis, J. A. | 2008 | CMR | |
| The Watershed and the Baylands (Transcript) | Collins, J. N. | 1998 | WS | |
| The Way It Was: Mythology, Memory, and Maps of the Early San Francisco Bay Area (Abstract for American Society for Environmental History Conference, March 2000) | Grossinger, R. M. | 2000 | HEP | |
| The Wetland Project Tracker | May, M.; Breaux, A.; Martindale, M.; Tuxen, K.; Collins, J.; Delaney, M.; Featherston, T.; Zhang, E. | 2005 | HTML | WL |
| The colonial ascidian Didemnum sp. A: Current distribution, basic biology, and potential threat to marine communities of the northeast and west coasts of North America | Bullard, S. G.; Lambert, G.; Carman, M. R.; Byrnes, J.; Whitlatch, R. B.; Ruiz, G.; Miller, R. J.; Harris, L.; Valentine, P. C.; Collie, J. S.; Pederson, J.; McNaught, D. C.; Cohen, A. N.; Asch, R. G.; Dijkstra, J.; Heinonen, K. | 2007 | BI | |
| The concentration and load of PCBs, OC pesticides, and mercury associated with suspended sediments in the lower Guadalupe River, San Jose, California. A Technical Report of the Regional Watershed Program | McKee, L. J.; Leatherbarrow, J.; Eads, R.; Freeman, L. | 2004 | WS | |
| The exotic species threat to California's coastal resources | Cohen, A. N. | 1998 | BI | |
| The invasion of the Pacific Coast by the European green crab Carcinus maenas | Cohen, A. N.; Cassell, J. L.; Olin, P. G. | 1998 | BI | |
| The invasion of the estuaries | Cohen, A. N.; Patten, K | 1997 | BI | |
| The level of agreement among experts applying best professional judgment to assess the condition of benthic infaunal communities | Weisberg, S. B.; Thompson, B.; Ranasinghe, J. A.; Montagne, D. E.; Cadien, D. B.; Dauer, D. M.; Diener, D.; Oliver, J.; Reish, D. J.; Velarde, R. G.; Word, J. Q. | 2008 | CMR RMP | |
| The long term fate of PCBs in San Francisco Bay | Davis, J. A. | 2002 | PPT | RMP |
| The potential distribution and abundance of zebra mussels in California | Weinstein, A.; Cohen, A. N. | 1998 | BI | |
| The regulation of biological pollution: Preventing exotic species invasions from ballast water discharged into California coastal waters | Cohen, A. N.; Foster, B. | 2000 | BI | |
| The release of pest species by marine aquaculture: lessons from a South African parasite introduced into California waters | Cohen, A. N.; A.N. Cohen; S.K. Webb | 2002 | BI | |
| The slow recovery of the San Francisco Estuary from the legacy of organochlorine pesticides | Connor, M. S.; Davis, J. A.; Leatherbarrow, J.; Greenfield, B. K.; Gunther, A.; Hardin, D.; Mumley, T.; Werme, C.; Oram, J. J. | 2007 | RMP | |
| The tidal marsh food web | Grenier, J. L.; Collins, J.; Davis, J. A.; Greenfield, B. K. | 2002 | CMR WL | |
| The use of the Simple Model for informing environmental science and management: Is this the right tool for your needs? (Presentation at the Bay Area Stormwater Management Agencies Association (BASMAA) modelling forum, San Francisco Regional Water Quality Control Board, Oakland, May, 2001) | McKee, L. J. | 2001 | WS | |
| Tidal Marsh Vegetation | Vasey, M.; Callaway, J.V.; Parker, T. | 2002 | WL | |
| Tidal wetland restoration potential using dredged sediments: a methodology for assessment with examples from the North Bay Area | Gahagan & Bryant Associates; San Francisco Estuary Institute | 1996 | WL | |
| Time Series of Suspended Solids Concentration, Salinity, Temperature, and Total Mercury Concentration in San Francsico Bay During Water Year 1998 | Ruhl, C. A.; Schoelhamer, D. H. | 1998 | RMP | |
| Time Series of Trace Element Concentrations Calculated from Time Series of Suspended Solid Concentrations and RMP Water Samples | Schoellhamer, D. H. | 1996 | HTML PDF | RMP |
| Toxic Contaminants in the San Francisco Bay-Delta and their Possible Biological Effects | Phillips, D. J. H. | 1987 | AHI | |
| Toxic Potential of PAHs in San Francisco Estuary Sediments | Ross, J. R. M.; Oros, D. R. | 2006 | RMP | |
| Transoceanic transport mechanisms: The introduction of the Chinese mitten crab Eriocheir sinensis to California | Cohen, A. N.; Carlton, J. | 1997 | BI | |
| Trends in Suspended Sediment Input to the San Francisco Bay for Local Tributaries Watersheds | Philip Williams and Associates, Ltd. | 2005 | WS | |
| UC Santa Barbara Graduate Project Report: "A Cost and Environmental Analysis of Aquatic Plant Management in California" | Frieman, G. M.; Lehman, G. V.; Quinn, J. D.; Wittmann, M. E. | 2004 | PDF HTML | APMP |
| Uncertainty in Biodiversity Planning: Lessons from the Bay Area (Transcript) | Collins, J. N. | 1998 | WL | |
| Universal Wetland Ecological Features (Graphic) | Collins, J. N. | 2003 | WL | |
| Urban Runoff Literature Review (TMDL Presentation) | McKee, L. J.; Leatherbarrow, J.; Newland, S.; Davis, J. A. | 2002 | RMP | |
| Urging Action to control an abalone parasite and prevent other introductions via aquaculture activities. | Cohen, A. N.; et al.; Pete Wilson | 1997 | BI | |
| Using a Spatially Balanced, Random Sampling Design to Assist Informed Management Decision | Lowe, S.; Ross, J. R. M; Grosso, C. S.; Franz, A.; Stevens, D. L. | 2005 | HTML | RMP |
| WRMP Factsheet Wetland and Riparian Base Map | Williams, M.; Cayce, K. | 2009 | WL | |
| Water Quality Improvements Are Critical to Waterfront Development: Lessons from Boston, San Francisco and Kitakyushu | Connor, M. | 2005 | CMR | |
| Water Quality Improvements are Critical to Waterfront Devleopment: Lessons from Boston, San Francisco and Kitakyushu | Connor, M. | 2006 | CMR | |
| Water Quality Science and Management in the Delaware Estuary | Fikslin, T. | 2008 | PPT | RMP |
| Water Quality in San Francisco Bay | Davis, J. A. | 2002 | PPT | RMP |
| Water quality modeling: Characterization of nutrients in surface waters and modeling at the watershed scale (Guest lecture, University of California at Berkeley, Civil & Environmental Engineering CE 290C: Watersheds and Water Quality, February 21, 2002) | McKee, L. J. | 2002 | WS | |
| Watershed Conference (Transcript) | Collins, J. N. | 1997 | WL | |
| Watershed Management in the Bay Area (Transcript) | Collins, J. N. | 1997 | WS | |
| Weeding the garden | Cohen, A. N. | 1992 | BI | |
| Wetland Habitat Changes in the Rodeo Lagoon Watershed, Golden Gate National Recreation Area, Marin County, CA | Striplen. C. J.; Grossinger, R. M.; Collins, J. N. | 2004 | HEP WL | |
| Wetland Tracker Factsheet, Bay Area, Level 1: Landscpae Assessment | San Francisco Estuary Institute | 2008 | WL | |
| Wetlands Work at SFEI | San Francisco Estuary Institute | 2001 | PPT | WL |
| What are Data? (Transcript) | Collins, J. N. | 1996 | WL | |
| What did this place used to look like, anyway? An Example of Historical Ecology Research from the San Francisco Bay Area, CA (Abstract for Society for Ecological Restoration Conference 1999) | Grossinger, R. M.; Brewster, E.; Collins, J. N.; Der, Z. | 1999 | HEP | |
| What is a Tidal Marsh? | Collins, J. N. | 1996 | WL | |
| Wildcat Creek 2001 Report | Collins, J. N; Collins, L. M.; Grossinger, R. M.; McKee, L. J.; Riley, A. | 2001 | HTML | WL |
| Wildcat Watershed Study | San Francisco Estuary Institute | 2001 | HTML | |
| Will Knowing Tidal Elevation Help Explain Variations in Sediment Chemistry and Microbial Processes Among Sample Plots in Tidal Marshes? | Collins, J. N. | 2001 | WL | |
| Workshop Report: The Effects of Polycyclic Aromatic Hydrocarbons (PAH) in San Francisco Bay Sediments | Oros, D.; Connor, M. | 2006 | RMP | |
| Yuma Bat Protocol | Johnston, D. | 2002 | WL | |
| Zebra Mussel's Calcium Threshold and Implications for its Potential Distribution in North America | Cohen, A. N.; Weinstein, A. | 2001 | BI |
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