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Weisberg, SB, Word JQ, Velarde RG, Reish DJ, Oliver J, Diener D, Dauer DM, Cadien DB, Montagne DE, Ranasinghe JA et al..  2008.  The level of agreement among experts applying best professional judgment to assess the condition of benthic infaunal communities. Ecological Indicators: Integrating, Monitoring, Assessment and Management. 8:389-394. Download: BPJ Gold Standard.pdf (701.59 KB)
Weisberg, SB, Thompson B, Ranasinghe JA, Lowe S, Melwani A.  2012.  Benthic macrofaunal assemblages of the San Francisco Estuary and Delta, USA. Environmental Monitoring Assessment .  Download: Thompson et al 2012 Benthic macrofaunal asemblages.pdf (642.77 KB)
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Thompson, B.  2008.  Relationships among SQO indicators in San Francisco Bay and continuing development of methods. NorCal SETAC Annual Meeting.
Thompson, B, Lowe S.  2008.  Sediment Quality Assessments in the San Francisco Estuary.  Download: report574.pdf (2.52 MB)
Thompson, B, Spies RM, Ohlendorf H, Neale J, Kuwabara J, Hunt JA, Brown CL, Adelsbach T, Schwarzbach S, Taberski K.  2007.  Biological Effects of Anthropogenic Contaminants in the San Francisco Estuary. Environmental Research. 105:156-174. Download: Thompson_EnvironRes2007.pdf (528.14 KB)
Thompson, B.  2002.  SFEI: More Than Just RMP (2002 RMP Annual Meeting).  Download: Bruce-T_RMPMtg-2002.ppt (1011 KB)
Thompson, B, Melwani AR, Hunt JA.  2009.  Estimated Sediment Contaminant Concentrations Associated with Biological Impacts at San Diego Bay Cleanup Sites.  Download: ASC_SanDiegoReport_Final.pdf (1.25 MB)
Thompson, B, Weisberg S, Melwani A, Lowe S, Ranasinghe JA, Cadien DB, Dauer DM, Diaz RJ, Fields W, Kellogg M et al..  2011.  Low levels of agreement among experts using best professional judgment to assess benthic condition in the San Francisco Estuary and Delta. Ecological Indicators. 12(1):167-173. Download: 636 Thompson Melwani Lowe-assess benthic condition.PDF (177.24 KB)
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Ranasinghe, JA, Lowe S, Smith R, Thompson B.  2004.  Evaluation of Benthic Assessment Methodology in Southern California Bays and San Francisco Bay. Technical Report 432.  Download: 432_bri_sfei.pdf (1.44 MB)
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Weisberg, SB, Thompson B, Huff DD, Oakden JM, Hyland JL, Lee II H, Velarde RG, Cadien DB, Ranasinghe JA, Welch K et al..  2010.  Habitat-Related Benthic Macrofaunal Assemblages of Bays and Estuaries of the Western United States . Integrated Environmental Assessment and Management . 8(4):638-648. Download: Ranasinghe et al 2012 West Coast Benthos.pdf (213.19 KB)
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Melwani, AR, Thompson B.  2008.  The Influence of Chemical and Physical Factors on Macrobenthos in the San Francisco Estuary.  Download: EEPS_Benthos_FINAL_ALL.pdf (1.55 MB)
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Lowe, S, Anderson B, Phillips BM, Hunt J, Taberski K, Carr RS, Thompson B.  2007.  Patterns and trends in sediment toxicity in the San Francisco Estuary. Environmental Research. 105:145-155. Download: Anderson_EnvironRes2007.pdf (972.24 KB)
Lowe, S, Thompson B.  2004.  Assessment of macrobenthos resonse to sediment contamination in the San Francisco Estuary, USA. Environmental Toxicology and Chemistry. 23 Download: MacrobenSedResponseSFEI60.pdf (213.18 KB)
Lowe, S, Hoenicke R, Taberski K, Smith R, Thompson B, Stevens D, Leatherbarrow JE.  2004.  Re-design Process of the San Francisco Estuary Regional Monitoring Program for Trace Substances (RMP). Status & Trends Monitoring Component for Water and Sediment.  Download: RMP_2002_No109_RedesignProcess.pdf (1.72 MB)
Lowe, S, Ross JRM, Thompson B.  2003.  CISNet San Pablo Bay Network of Environmental Stress Indicators; Benthic Microfauna.. Report to USEPA. EPA Grant Number: R826940.
Lowe, S, Phillips BM, Hoenicke R, Tjeerdema RS, Thompson B, Anderson BS, Hunt JW.  2003.  Causes of Sediment Toxicity to Mytilus galloprovincialis in San Francisco Bay, California. Archive of Environmental Contamination Toxicology. 45:486-491.
Lowe, S, Hoenicke R, Grosso C, Thompson B, Stevens D, Leatherbarrow JE, Smith RT, DIWG.  2002.  The Design Process for the Status and Trends Component. The 2002 RMP Annual Meeting.  Download: Sarah-L_RMPMtg-2002.ppt (6.15 MB)
Lowe, S, Thompson B, Kellogg M.  2000.  Results of the Benthic Pilot Study 1994 - 1997, Part 1. Technical Report of the San Francisco Estuary Regional Monitoring Program for Trace Substances.  Download: 94-97_benthic.pdf (6.51 MB)
Lowe, S, Thompson B, Gravitz L.  1999.  Sediment Conditions near Wastewater Discharges in San Francisco Bay. In: Report to the Bay Area Discharger's Assoc.
Lowe, S, Hoenicke R, Taberski K, Smith R, Thompson B, Stevens D, Leatherbarrow JE.  2005.  Re-design Process of the San Francisco Estuary Regional Monitoring Program for Trace Substances (RMP) Status & Trends Monitoring Component for Water and Sediment. Status & Trends Monitoring Component for Water and Sediment.  Download: RMP_2002_No109_RedesignProcess.pdf (1.72 MB)
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Gunther, A, Thompson B.  2004.  Development of Environmental Indicators of the Condition of San Francisco Estuary. A Report to the San Francisco Estuary Project.  Download: Indicatorreport_final.pdf (770.99 KB)
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Davis, JA, Lowe S, Anderson B, Hunt J, Thompson B.  2004.  Conceptual Framework and Rationale for the Exposure and Effects Pilot Study.  Download: EEPS_Concept_CN317.pdf (634.79 KB)
Davis, JA, Lowe S, Anderson B, Phillips BM, Hunt JA, Tjeerdema RS, Taberski K, Thompson B, Nicely P.  2003.  Summary of 10 years of sediment toxicity monitoring for the San Francisco Estuary RMP. The 2003 RMP Annual Meeting.  Download: Anderson.ppt (3.39 MB)
Davis, JA, Hoenicke R, Gunther A, Thompson B.  2000.  An overview of contaminant-related issues identified by monitoring in San Francisco Bay. Environ. Mon. Assess.. 64:409-419. Abstract
Davis, JA, Hoenicke R, Gunther A, Thompson B.  1999.  An Overview of Contaminant-Related Issues Identified by Monitoring in San Francisco Bay - Abstract. Abstract