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Flegal, AR, Conaway CH, Watson E, Kerin E.  Submitted.  Assessing historic mercury concentrations in sediments, San Francisco Bay estuary. Environmental Geology.
Flegal, AR, Dunlap C, Steding D, Unruh J, Alpers C, Bouse RM.  2003.  Anthropogenic sources of lead in the Sacramento and San Joaquin drainage basins. Environmental Science and Technology.
Flegal, AR, Spinelli GA, Fisher A, Wheat CG, Tryon MD, Brown KM.  2002.  Groundwater seepage into northern San Francisco Bay: implications for dissolved metals budgets. Wate Resources Research.
Flegal, AR, Conaway C, Squire S, Mason RP.  2003.  Mercury speciation in the San Francisco Bay estuary. Marine Chemistry.
Flegal, AR, Scelfo GM, Sanudo-Wilhelmy SA, Ndung'u K.  2003.  The estuarine cycles of cobalt in San Francisco Bay and the New York Bight. Limnology and Oceanography.
Flegal, AR, Squire S, Scelfo GH, Revenaugh J.  2002.  Decadal decline of anthropogenic silver in San Francisco Bay: Comparison with lead. Environmental Science and Technology.
Flegal, AR, Squire S, Scelfo GH, Revenaugh J.  2002.  Decadal trends of silver and lead contamination in San Francisco Bay surface waters. Environmental Science and Techology. 36:2379-2386.
Flegal, AR, Squire S, Scelfo GH, Revenaugh J.  Submitted.  Factors controlling decadal variations in trace element contamination in San Francisco Bay. Geochimica et Coscochimica Acta.
Flegal, AR, Sanudo-Wilhelmy SA, Rivera-Duarte I.  1996.  Silver contamination in aquatic environments. Reviews of Environmental Contamination and Toxicology. 148:139-162.
Flegal, AR, Sanudo-Wilhelmy SA.  1993.  Comparable levels of trace metal contamination in two semi-enclosed embayments: San Diego Bay and South San Francisco Bay. Environmental Science and Technology. 27:1934-1936.
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Ross, JRM, Flegal AR, Brown CL, Squire S, Scelfo GM, Hibdon S.  2007.  Spatial and temporal variations in silver contamination and toxicity in San Francisco Bay. Environmental Research. 105:34-52. Download: Flegal_EnvironRes2007.pdf (1014.85 KB)
Ross, JRM, Flegal AR, Buck KN, Bruland KW.  2007.  A review of total dissolved copper and its chemical speciation in San Francisco Bay, California. Environmental Research. 105:5-19. Download: Buck_EnvironRes2007.pdf (976.86 KB)
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McKee, LJ, Flegal AR, Ganju N, Leatherbarrow JE, Schoellhamer DH.  2005.  Concentratons and Loads of Organic Contaminants and Mercury associated with Suspended Sediment Discharged to San Francisco Bay from the Sacramento-San Joaquin River Delta, CA.  Download: MallardIslandReport_2002_03.pdf (1.93 MB)
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Flegal, AR, Conaway CH, Marvin-DiPasquale M, Thomas MA, Steding DJ, Abu-Saba KE.  2003.  Mercury Contamination from Historic Mining in Water and Sediment, Guadalupe River and San Francisco Bay, CA. Geochemistry: Exploration, Environment, Analysis.
Flegal, AR, Luoma SN, Ritson PI, Bouse RM.  1999.  Stable lead isotopic analyses of historic and contemporary lead contamination of San Francisco Bay estuary. Marine Chemistry. 64:71-83.
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Looker, R, Ross JRM, Flegal AR, Conaway CH, Mason RP.  2007.  Decadal mercury trends in San Francisco Estuary sediments. Environmental Research. 105:53-66. Download: Conaway_EnvironRes2007.pdf (741.82 KB)
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Flegal, AR, Scelfo GM, Sanudo-Wilhelmy SA, Ritson PI, Rivera-Duarte I, Smith GJ, Gordon MR.  1996.  Metal contamination in San Francisco Bay waters: Historic perturbations, contemporary concentrations, and future considerations. San Francisco Bay: The Ecosystem(J.T. Rollibaugh, ed.)American Association for the Advancement of Science. :173-188.
Flegal, AR, Luengen AC, Friedman CS, Raimondi PT.  2003.  Evaluation of immune responses as indicators of contamination in San Francisco Bay, Using a novel phagocytosis and phagocytic index method developed for mussels. Marine Environmental Research.
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Davis, JA, Connor M, Flegal AR.  2008.  The State of San Francisco Bay: Water Quality. Proceedings of the National Water Quality Monitoring Conference.
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Flegal, AR, Conaway C, Black F, Leungen A, Langster M.  2005.   Survey of UCSC Mercury Work in and around San Francisco Bay. Hg complexation, salmonid uptake, algalblooms, fuel emissions... a whirlwind tour. San Francisco Bay Mercury Research Coordination Meeting.  Download: FrankBlackHg_wetland-ebook.pdf (1.01 MB)
Flegal, AR, Steding DJ.  2003.  Mercury concentrations in coastal California precipitation: Evidence of local and trans-Pacific fluxes of mercury to North America. Journal of Geophysical Research - Atmospheres.
Flegal, AR, Watson EB, Conaway CH, Flanders JR.  2003.  Mercury deposition in a tidal marsh downstream of the historic New Almaden mining district, CA.  Download: SETAC2003-KIT.ppt (11.13 MB)
Flegal, AR, Bruland KW, Roitz JS.  2002.  The biogeochemical cycling of manganese in San Francisco Bay: Temporal and spatial variations. Estuarine, Coastal and Shelf Science. 54:227-239.
Flegal, AR, Dunlap CE, Bouse RM.  2000.  Past leaded gasoline emissions as a nonpoint source tracer in riparian systems: A study of river inputs to San Francisco Bay. Environmental Science and Technology. 34:1211-1215.
Flegal, AR, Rivera-Duarte I.  1997.  Pore-water silver concentration gradients and benthic fluxes from contaminated sediments of San Francisco Bay, California, U.S.A.. Marine Chemistry. 56:15-26.