Documents and Reports

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Cohen, AN, Heinonen K, Dijkstra J, McNaught DC, Pederson J, Collie JS, Valentine PC, Harris L, Miller RJ, Ruiz G et al..  2005.  The invasive colonial ascidian Didemnum sp.: current distribution, basic biology, and potential threat to marine communities of the northeast and west coasts of the United States. J. of Experimental Marine Biology and Ecology.
Cohen, AN, Tyler S, Mathieson A, Dyrynda P, Dean H, Calder D, Bullock R, Lambert C, Chapman J, Pederson J et al..  2001.  Rapid Assessment Survey of the presence of marine invasive species along the coast of Massachusetts (abstract). New England Estuarine Research Society Abstracts, Spring Meeting, May 31-June 3, 2001.
Cohen, AN, Tyler S, Mathieson A, Dyrynda P, Dean H, Calder D, Bullock R, Lambert C, Chapman J, Pederson J et al..  2001.  Rapid Assessment Survey of nonindigenous species in coastal Massachusetts. In: Abstracts, Second International Conf. on Marine Bioinvasions, April 9-11, 2001, New Orleans LA. .
Cohen, AN, Bingham BL, Lambert CC, Harris LH, Chapman JW, Schwindt E, Reardon K, Rao LC, Murray SN, Ljubenkov JC et al..  2001.  Project Report for the Southern California Exotics Expedition 2000: A Rapid Assessment Survey of Exotic Species in Sheltered Coastal Waters. Appendix C in:. Project Report for the Southern California Exotics Expedition 2000: A Rapid Assessment Survey of Exotic Species in Sheltered Coastal Waters. Appendix C in:.
Cohen, AN, Toft J, Klinger T, Cordell JR, Mills CE, Li K, Kohn A, Bookheim B, Secord D, Berry H et al..  1998.  Report of the Puget Sound Expedition, September 8-16, 1998; A Rapid Assessment Survey of Nonindigenous Species in the Shallow Waters of Puget Sound.
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Davis, JA, Swenson S, Ichicawa G, Lamerdin C, Heim WA, Bonnema A, Crane D, Ross JRM, Bezalel SN, Hunt JA.  2013.  Contaminants in Fish from California Rivers and Streams, 2011. A Report of the Surface Water Ambient Monitoring Program (SWAMP).  Download: RiversStreams_fullreport.pdf (25.5 MB)RiversStreams_FactSheet-5 Final.pdf (6.4 MB)app1_rivers_qa.pdf (69.35 KB)app2_concise_smmry.pdf (29.58 KB)app3_detailed_data_smmry.pdf (44.83 KB)app4_individual_hg.pdf (21.25 KB)
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Bruland, KW, Donat JR, Lao KA.  1994.  Speciation of dissolved copper and nickel in South San Francisco Bay: A Multi-method approach. Analytica Chimica Acta. 284:557-572.
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Larned, K.  2005.  South Bay Salt Pond Restoration Project Interactive Map. State of the Estuary Conference.  Download: 05SOE_Poster_Larned_MedRes.pdf (3.64 MB)
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Davis, JA, Gunther AJ, O'Connor JM, Spies RB, Richardson BJ, Wyatt E, Larson E, Meiorin EC.  1991.  Status and Trends Report on Pollutnats in the San Francisco Estuary . :291.
Davis, JA, Gunther AJ, O'Connor JM, Spies RB, Richardson BJ, Wyatt E, Larson E.  1991.  Status and Trends Report on Pollutants in the San Francisco Estuary.
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Cohen, AN, Weinstein A, Carlton JT, Emmett MA, Lau W.  2005.  Global Spread of Marine Organisms in the Baitworm Trade.
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McKee, LJ, Brewster E, Dale R, Cornwall, Hunter RC, Lawton R, Grossinger RM.  2000.  Summary of existing information in the watershed of Sonoma Valley in relation to the Sonoma Creek Watershed Restoration Study and recommendations on how to proceed. A report prepared by San Francisco Estuary Institute (SFEI) and Sonoma Ecology Center (SEC) for US Army Corps of Engineers, San Francisco.
McKee, LJ, David N, Leatherbarrow JE.  2006.  Mercury Transport to San Francisco Bay Through the Sacramento-San Joaquin River Delta. National Water Quality Monitoring Conference.
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Oram, JJ, Davis JA, Leatherbarrow JE.  2005.  DRAFT REPORT: A Model of Long-Term PCB Fate and Transport in San Francisco Bay, CA.
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Davis, JA, Leatherbarrow JE, Yee D.  2002.  BACWA Polychlorinated Biphenyls in Municipal Wastewater Effluent Study.
Davis, JA, Oros DR, Leatherbarrow JE.  2002.  Polychlorinated Biphenyls in Northern San Francisco Estuary Refinery Effluents.
Davis, JA, Leatherbarrow JE, Yee D.  2001.  PCBs in effluent. Prepared for the Bay Area Clean Water Agencies by the San Francisco Estuary Institute. Richmond, CA..
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McKee, LJ, Hoenicke R, Leatherbarrow JE.  2001.  Contaminant contributions from the Guadalupe River and Coyote Creek watersheds to the lower South San Francisco Bay. Abstracts of the 5th Biannual State of the Estuary Conference – San Francisco Estuary: Achievements, trends and the future.
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Hoenicke, R, Leatherbarrow JE.  2000.  The Estuary Interface Pilot Study: 1998 Progress Report.
Hoenicke, R, Tucker D, Tsai P, Hansen E, Lee K, Yee D.  2002.  Atmospheric Deposition of Trace Metals in San Francisco Bay.
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Lowe, S, Thompson B, Lee II H.  1999.  Impacts of Nonindigenous Species on Subtidal Benthic Assemblages in the San Francisco Estuary. Report to US EPA Region IX.. :16.
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Weisberg, SB, Thompson B, Huff DD, Oakden JM, Hyland JL, Lee II H, Velarde RG, Cadien DB, Ranasinghe JA, Welch K et al..  2010.  Habitat-Related Benthic Macrofaunal Assemblages of Bays and Estuaries of the Western United States . Integrated Environmental Assessment and Management . 8(4):638-648. Download: Ranasinghe et al 2012 West Coast Benthos.pdf (213.19 KB)
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Leidy, RA.  2007.  Ecology, Assemblage Structure, DIstribution, and Status of Fishes in Streams Tributary to the San Francisco Estuary, California. :194. Download: No530_Leidy_FullReport.pdf (21.92 MB)Appendices I,II,III.pdf (13.07 MB)
Leidy, RA.  1999.  Robert A. Leidy Fish Survey 1992-1998 Bay Area Stream Fishes. Abstract  Download: basf_v12.pdf (1.37 MB)
Lent, MA, Oram JJ, McKee LJ.  2008.  Guadalupe Watershed Model. Presentation to Santa Clara Valley Water District.  Download: SCVWD_presentation_09032008_final.ppt (9.77 MB)