Documents and Reports

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Davis, JA, Jarman WM, Johnson GW, Bacon CE, Ehrlich R, Risebrough RW.  2000.  Unmixing polychlorinated biphenyl source fingerprints in surface waters of San Francisco Bay. Environmental Science and Technology. 34:552-559.
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Jarman, WM, Bacon C, Owen B.  1999.  Trace Organic Sampler Intercalibration Results.
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Davis, JA, Hoenicke R, Jarman WM, Risebrough RW, Bacon CA, Vedder J, Sericano JL.  1997.  PCB intercalibration exercise with Regional Monitoring Program water sample extracts. 1996 Regional Monitoring Program Annual Report. :234-239.
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Oros, DR, Simoneit BRT, Mazurek MA, Baham JE.  2002.  Organic Tracers from Wild Fire Residues in Soils and Rain/River Wash-Out. Water, Air and Soil Pollution. 137:p.203-233.
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Davis, JA, Clark S, Bailey HC.  1995.  The Effects of Toxic Contaminants in Waters of the San Francisco Bay and Delta. :125pp..
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Baldwin, D.  2012.  Impact of dissolved copper on the olfactory system of seawater-phase juvenile salmon.  Download: SeawaterEOG2012report12202012_final.pdf (224.59 KB)
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Flegal, AR, Wood TM, Baptista AM, Kuwabara JS.  1995.  Diagnostic modeling of trace metal partitioning in South San Francisco Bay. Limnology and Oceanography. 40:345-358.
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Barnard, PL, Schoellhamer DH, Jaffe BE, McKee LJ.  In Press.  Sediment transport in the San Francisco Bay Coastal System: An overview.. Marine Geology Special Issue: A multi-discipline approach for understanding sediment transport and geomorphic evolution in an estuarine-coastal system.
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Phillips, JH, Baumgartner DJ.  1987.  The Screening of Problems Relating to the San Francisco Bay_Delta. :77.
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Greenfield, BK, Connor MS, Bay SM.  2008.  Frameworks to evaluate human health impacts of contaminated sediments. NorCal SETAC Annual Meeting.
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Bay, SM, Vulpe CD, Loguinov AV, Arai A.  2012.  Application of Gene Expression Analysis for Sediment Toxicity Stressor Identification. RMP Technical Report.  Download: GenomicsStressorID_RMP_FinalReport_1_10_12_RMP.pdf (3.21 MB)
Beagle, J, Whipple A, Grossinger RM.  2012.  Historical Ecology and Landscape-Scale Restoration. Application to the McCormack-Williamson Tract. 7th Biennial Bay-Delta Science Conference 2012.  Download: Beagle_MWT for Delta Science conf 2012-web.pdf (110.26 MB)
Beagle, J, Whipple A, Grossinger RM.  2013.  Landscape Patterns and Processes of the McCormack-Williamson Tract and Surrounding Area: A framework for restoring a resilient and functional landscape.  Download: McCormack-Williamson_SFEI-ASC_2013.pdf (21.34 MB)
Bruland, KW, Beck NG, Rue EL.  2002.  Short-term biogeochemical influence of a diatom bloom on the nutrient and trace metal concentrations in a South San Francisco Bay microcosm experiment. Estuaries.
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Greenfield, BK, Davis JA, Fairey R, Ichikawa G, Tjeerdema RS, Roberts C, May MD, Stoelting MS, Becker JS.  2002.  Contaminant concentrations in sport fish from San Francisco Bay, 1997. Marine Pollution Bulletin, accepted with revisions.. 44:1117-1129.
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Cohen, AN, Nordby JC, McBroom JT, Beissinger SR.  2005.  Impact of invasive Spartina alterniflora on song sparrow and marsh wren populations in San Francisco Bay salt marshes. Proceedings of the International Spartina Conference.
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Davis, JA, Stephenson M, Hardin D, Gunther AJ, Sericano J, Bell D, Scelfo GH, Gold D, Crick J.  1999.  Long term bioaccumulation monitoring with transplanted bivalves in San Francisco Bay. Marine Pollution Bulletin. 38:170-181.
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Beller, EE, Salomon M, Grossinger RM.  2010.  Historical Vegetation and Drainage Patterns of Western Santa Clara Valley: A technical memorandum describing landscape ecology in Lower Peninsula, West Valley, and Guadalupe Watershed Management Areas.  Download: HistoricalEcology_of_Western_SantaClaraValley_SFEI_111910.pdf (43.77 MB)West_Sta_Clara_County_Historical_Ecology_GIS_data.zip (1.29 MB)
Beller, EE.  2009.  Historical Significance of creosote-treated structures. Forum on the Impacts and Benefits of Creosoted Pier Pilings and Other Artificial Substrate in San Francisco Bay.
Beller, EE, Grossinger RM, Salomon M, Dark S, Stein E, Orr BK, Downs PW, Longcore T, Coffman G, Whipple A et al..  2011.  Historical Ecology of the lower Santa Clara River, Ventura River, and Oxnard Plain: an analysis of terrestrial, riverine, and coastal habitats.  Download: Report - high resolution version for printing (201.86 MB)Report - low resolution version for screen viewing (17.09 MB)
Beller, EE, Grossinger RM, Nicholson M, Salomon M.  2012.  Upper Penitencia Creek Historical Ecology Assessment. Abstract  Download: Upper_Penitencia_HE_061412_highres_forprinting.pdf (16.48 MB)
Beller, E, Safran S, Grossinger R, Grenier JL, Whipple AW, Beagle J, Robinson A, Askevold RA.  2012.  Developing Tools for Landscape-Scale Restoration in the Delta. Bay-Delta Science Conference .  Download: DS_Poster_Final_Draft_v2-web.pdf (4.59 MB)
Beller, EE, Salomon M, Grossinger RM.  2013.  An Assessment of the South Bay Historical Tidal-Terrestrial Transition Zone. Abstract  Download: SFEI_SouthBay_Tzone_summary_memo_2013.pdf (7.87 MB)
Bergen, S, Yee D, Hammond D, Helm W, Rattonetti T.  2009.  A Legacy of Contaminants in SF Bay and Wetland Cores. 9th Biennial State of the San Francisco Estuary Conference September 29 - October 1 2009.  Download: SOE09poster Yee v3.pdf (29.45 MB)
Berger, R, Conomos J, Herrgesell P, Mearns A, Schubel JR, Weisberg S.  2004.  Report of the 2003 Program Review. Regional Monitoring Program for Trace Substances in San Francisco Estuary.  Download: RMP2003_Prog_Review_Rept.pdf (1023.38 KB)